Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006803

Physical Location & Seq

Genomic Coordinates Reverse (-)

87608457 .. 87612558

Gene Structure 4102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAATGAAACGTACGGATATCATCACCCCAAGCCTCCGATCCGATCAAGCTGCTCTGCAATTTCAGGCCCAATTGAAAATACAGAAATGGGGGAGCGGAAAAGGCATAGAATTCTCATGGTTTCTGATTTTTTCTACCCCAACTTTGGTGGTGTGGAGAATCACATCTACTATCTTTCACAATGCCTTCTCAAGCTTGGTCACAAGGTGGTGGTAATGACTCATGCATACCAGAATCGTTCTGGAGTGAGATATATGACAGGCGGCCTGAAAGTGTATTATGTACCATGGCGGCCATTTCTTATGCAGAACACTTTTCCAACATTTTATGGGACACTTCCAATTGTGAGGACTATCCTTATTCGAGAGAATATATCGTTGGTACATGGGCATCAAGCCTTCTCAACTCTCTGCCACGAGGCTTTGATGCACGCACGCACAATGGGTTATAAGGTTGTGTTTACAGATCATTCACTCTATGGTTTCGCTGATGCGGGAAGCATACACATGAACAAGGTCTTGCAGTTTACTTTAGCGGAAGTGAGTCAGGCCATTTGTGTTTCTCATACAAGCAAGGAGAACACTGTGCTACGGTCAGGTTTGCCACCAGAAAAGGTGTTTGTAATACCTAATGCTGTTGACACAGCTATGTTCAAGCCTGCACCAACACGACTGAGTCATCATGAAATTGTTATTGTTGTTATAAGTAGGTTGGTTTACCGGAAAGGTGCAGATCTGCTTGTTGAAGTTATTCCAGAAGTTTGCCGTTTATATCCCAATGTTCGTTTCATTGTTGGAGGAGATGGACCTAAACGTGTGCGGTTGGAAGAGATGAGGGAAAAACATTCCCTCCAAGATCGAGTCGAAATGTTAGGTGCTGTTCAACACTCTCAAGTACGATCTGTTCTTATTACTGGCCATATATTCTTAAACAGTTCATTAACAGAAGCTTTTTGCATAGCCATCTTAGAGGCTGCTAGTTGCGGGTTATTAACAGTCAGTACACGAGTAGGAGGTGTCCCAGAGGTTCTACCAGATGACATGGTTGTACTTGCAAAACCAGATCCTAGTGACATGGTTCAAGCAATAGAGAAGGCAATATCAATACTTCCCAACATTGACCCAGAACAAATGCACAATCGTATGAAGGAACTTTACAATTGGCATGATGTTGCAAAACGAACAGAGATTGTTTATGACCGTGCCTTGAAATGCTCAAAGCAAAATCTCTTAAAACGACTCTCACGATACCTCTCATGTGGAGCTTGGGCAGGCAAGCTTTTTTGCTTGGTTATGATCATTGATTTTATATTTTGGCATCTGTTGCAACGATGGCAGCCTGCAGAGGATATTGAAGAGGTGCCTGATTTTGTTTTATCCCATGATCAAGATGATGGCATACCACGGGACAATAAGAACCAAAGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009893 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016254 GO:0016740 GO:0016757 GO:0016758 GO:0017176 GO:0019222 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0051704 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glycos_transf_1 PIGA

Protein Analysis

478

Amino Acids

54.16

Weight (kDa)

8.25

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	49 - 216	6.4e-29	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	50 - 211	3.7e-13	Glycosyl transferase 4-like domain
PIGA	PF08288	75 - 164	8.2e-43	PIGA (GPI anchor biosynthesis)
Glycos_transf_1	PF00534	224 - 369	8.7e-29	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	231 - 367	9e-26	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45100 AT3G45100 AT3G45100
fragaria_vesca	FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430
malus_domestica	MD11G1006700.v1.1 MD11G1007700.v1.1
prunus_persica	Prupe.6G004900_v2.0.a1 Prupe.6G143200_v2.0.a1
pyrus_communis	pycom11g00520
rosa_chinensis	RchiOBHm_Chr5g0083231
rosa_laevigata	RLG00000037021
rosa_multiflora	Rmu_ssc0000026.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001260
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG532900 Rh5BG560100 Rh5CG582800 Rh5DG569400
rosa_wichuraiana	Rw5G050000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	450, 704
AccB1I	GGYRCC	1 cut(s)	1360
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	7 cut(s)	97, 264, 292, 494, 536, 820, 984
AclWI	GGATC	2 cut(s)	34, 1058
AcoI	YGGCCR	2 cut(s)	293, 916
AcsI	RAATTY	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	208
AfaI	GTAC	6 cut(s)	14, 285, 384, 897, 1003, 1050
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	814
AgsI	TTSAA	7 cut(s)	77, 655, 746, 884, 1082, 1210, 1355
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 770, 802
AluBI	AGCT	7 cut(s)	51, 196, 647, 950, 1265, 1279, 1425
AluI	AGCT	7 cut(s)	51, 196, 647, 950, 1265, 1279, 1425
AlwI	GGATC	2 cut(s)	34, 1058
AoxI	GGCC	5 cut(s)	67, 265, 293, 549, 916
ApeKI	GCWGC	3 cut(s)	51, 974, 1336
ApoI	RAATTY	1 cut(s)	111
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	2 cut(s)	68, 806
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	806
BalI	TGGCCA	1 cut(s)	918
BanI	GGYRCC	1 cut(s)	1360
BarI	GAAGNNNNNNTAC	2 cut(s)	1139, 1171
BauI	CACGAG	2 cut(s)	416, 1005
BbvI	GCAGC	3 cut(s)	38, 961, 1348
BccI	CCATC	4 cut(s)	797, 971, 1326, 1388
BceAI	ACGGC	1 cut(s)	750
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BclI	TGATCA	2 cut(s)	1296, 1384
BfaI	CTAG	2 cut(s)	978, 1068
BfmI	CTRYAG	1 cut(s)	1341
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	5 cut(s)	52, 265, 293, 975, 1337
BlsI	GCNGC	5 cut(s)	53, 266, 294, 976, 1338
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	2 cut(s)	68, 806
BmiI	GGNNCC	1 cut(s)	1362
BmsI	GCATC	4 cut(s)	400, 417, 481, 1327
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	176, 876
BsaJI	CCNNGG	2 cut(s)	287, 1403
BsaWI	WCCGGW	1 cut(s)	720
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	919
BseDI	CCNNGG	2 cut(s)	287, 1403
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	919
BseRI	GAGGAG	1 cut(s)	813
BseXI	GCAGC	3 cut(s)	38, 961, 1348
BsgI	GTGCAG	2 cut(s)	645, 750
BshFI	GGCC	5 cut(s)	69, 267, 295, 551, 918
BshNI	GGYRCC	1 cut(s)	1360
BsiSI	CCGG	1 cut(s)	721
BsiWI	CGTACG	1 cut(s)	12
BslFI	GGGAC	3 cut(s)	346, 1004, 1421
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	3 cut(s)	346, 1004, 1421
BsnI	GGCC	5 cut(s)	69, 267, 295, 551, 918
Bsp143I	GATC	9 cut(s)	39, 44, 466, 733, 856, 899, 1063, 1296, 1384
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	7 cut(s)	97, 264, 292, 494, 536, 820, 984
BspANI	GGCC	5 cut(s)	69, 267, 295, 551, 918
BspCNI	CTCAG	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	1 cut(s)	1362
BspMAI	CTGCAG	1 cut(s)	1345
BspPI	GGATC	2 cut(s)	34, 1058
BspT107I	GGYRCC	1 cut(s)	1360
BsrBI	CCGCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	919
BssECI	CCNNGG	2 cut(s)	287, 1403
BssMI	GATC	9 cut(s)	39, 44, 466, 733, 856, 899, 1063, 1296, 1384
BssSI	CACGAG	2 cut(s)	416, 1005
BssT1I	CCWWGG	1 cut(s)	287
Bst2BI	CACGAG	2 cut(s)	416, 1005
Bst4CI	ACNGT	5 cut(s)	586, 594, 935, 997, 1202
Bst6I	CTCTTC	2 cut(s)	822, 1350
BstAPI	GCANNNNNTGC	1 cut(s)	1324
BstC8I	GCNNGC	6 cut(s)	432, 436, 660, 1273, 1277, 1341
BstDEI	CTNAG	2 cut(s)	674, 967
BstDSI	CCRYGG	2 cut(s)	287, 1403
BstKTI	GATC	9 cut(s)	42, 47, 469, 736, 859, 902, 1066, 1299, 1387
BstMBI	GATC	9 cut(s)	39, 44, 466, 733, 856, 899, 1063, 1296, 1384
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 1324, 1333
BstSFI	CTRYAG	1 cut(s)	1341
BstV1I	GCAGC	3 cut(s)	38, 961, 1348
BstX2I	RGATCY	2 cut(s)	733, 1063
BstXI	CCANNNNNNTGG	1 cut(s)	1427
BstYI	RGATCY	2 cut(s)	733, 1063
BsuRI	GGCC	5 cut(s)	69, 267, 295, 551, 918
BtgI	CCRYGG	2 cut(s)	287, 1403
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	6 cut(s)	432, 436, 660, 1273, 1277, 1341
CciI	TCATGA	1 cut(s)	682
Cfr13I	GGNCC	2 cut(s)	68, 806
Csp6I	GTAC	6 cut(s)	13, 284, 383, 896, 1002, 1049
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviQI	GTAC	6 cut(s)	13, 284, 383, 896, 1002, 1049
DdeI	CTNAG	2 cut(s)	674, 967
DpnI	GATC	9 cut(s)	41, 46, 468, 735, 858, 901, 1065, 1298, 1386
DpnII	GATC	9 cut(s)	39, 44, 466, 733, 856, 899, 1063, 1296, 1384
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	293, 916
Eam1104I	CTCTTC	2 cut(s)	822, 1350
EarI	CTCTTC	2 cut(s)	822, 1350
Eco130I	CCWWGG	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	806
EcoRI	GAATTC	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	287
FaqI	GGGAC	3 cut(s)	346, 1004, 1421
FauI	CCCGC	2 cut(s)	487, 977
FbaI	TGATCA	2 cut(s)	1296, 1384
Fnu4HI	GCNGC	5 cut(s)	52, 265, 293, 975, 1337
Fsp4HI	GCNGC	5 cut(s)	52, 265, 293, 975, 1337
FspBI	CTAG	2 cut(s)	978, 1068
GluI	GCNGC	5 cut(s)	52, 265, 293, 975, 1337
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	5 cut(s)	69, 267, 295, 551, 918
HapII	CCGG	1 cut(s)	721
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	4 cut(s)	194, 948, 1277, 1423
HinfI	GANTC	7 cut(s)	160, 220, 235, 544, 676, 861, 1239
HpaII	CCGG	1 cut(s)	721
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	5 cut(s)	462, 528, 640, 718, 1004
Hpy188I	TCNGA	3 cut(s)	39, 44, 127
Hpy188III	TCNNGA	6 cut(s)	243, 365, 683, 755, 1245, 1388
Hpy8I	GTNNAC	5 cut(s)	462, 528, 640, 718, 1004
HpyAV	CCTTC	4 cut(s)	197, 409, 1087, 1141
HpyCH4III	ACNGT	5 cut(s)	586, 594, 935, 997, 1202
HpyCH4IV	ACGT	2 cut(s)	11, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 1324, 1333
HpyF3I	CTNAG	2 cut(s)	674, 967
HpySE526I	ACGT	2 cut(s)	11, 814
Ksp22I	TGATCA	2 cut(s)	1296, 1384
Kzo9I	GATC	9 cut(s)	39, 44, 466, 733, 856, 899, 1063, 1296, 1384
LmnI	GCTCC	2 cut(s)	94, 1262
Lsp1109I	GCAGC	3 cut(s)	38, 961, 1348
LweI	GCATC	4 cut(s)	400, 417, 481, 1327
MaeI	CTAG	2 cut(s)	978, 1068
MaeII	ACGT	2 cut(s)	11, 814
MaeIII	GTNAC	2 cut(s)	200, 1070
MalI	GATC	9 cut(s)	41, 46, 468, 735, 858, 901, 1065, 1298, 1386
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	9 cut(s)	39, 44, 466, 733, 856, 899, 1063, 1296, 1384
MboII	GAAGA	2 cut(s)	839, 1367
MfeI	CAATTG	3 cut(s)	72, 342, 1159
MflI	RGATCY	2 cut(s)	733, 1063
MlsI	TGGCCA	1 cut(s)	918
MluCI	AATT	6 cut(s)	60, 72, 111, 342, 687, 1159
MluNI	TGGCCA	1 cut(s)	918
MlyI	GAGTC	5 cut(s)	214, 553, 685, 870, 1233
MmeI	TCCRAC	3 cut(s)	344, 775, 804
Mox20I	TGGCCA	1 cut(s)	918
Mph1103I	ATGCAT	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	918
MseI	TTAA	4 cut(s)	929, 941, 992, 1232
MslI	CAYNNNNRTG	2 cut(s)	506, 647
Msp20I	TGGCCA	1 cut(s)	918
MspI	CCGG	1 cut(s)	721
MunI	CAATTG	3 cut(s)	72, 342, 1159
MwoI	GCNNNNNNNGC	3 cut(s)	103, 1324, 1333
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	9 cut(s)	39, 44, 466, 733, 856, 899, 1063, 1296, 1384
NlaIV	GGNNCC	1 cut(s)	1362
NmuCI	GTSAC	2 cut(s)	200, 1070
NsiI	ATGCAT	1 cut(s)	229
PagI	TCATGA	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	1 cut(s)	1243
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	160, 235
Pfl23II	CGTACG	1 cut(s)	12
PflFI	GACNNNGTC	1 cut(s)	675
PkrI	GCNGC	5 cut(s)	53, 266, 294, 976, 1338
PleI	GAGTC	5 cut(s)	214, 552, 684, 869, 1233
PpsI	GAGTC	5 cut(s)	214, 552, 684, 869, 1233
PsiI	TTATAA	2 cut(s)	450, 704
PspLI	CGTACG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	1362
PspPI	GGNCC	2 cut(s)	68, 806
PsrI	GAACNNNNNNTAC	2 cut(s)	888, 920
PstI	CTGCAG	1 cut(s)	1345
PsuI	RGATCY	2 cut(s)	733, 1063
PsyI	GACNNNGTC	1 cut(s)	675
RsaI	GTAC	6 cut(s)	14, 285, 384, 897, 1003, 1050
RsaNI	GTAC	6 cut(s)	13, 284, 383, 896, 1002, 1049
RseI	CAYNNNNRTG	2 cut(s)	506, 647
SaqAI	TTAA	4 cut(s)	929, 941, 992, 1232
SatI	GCNGC	5 cut(s)	52, 265, 293, 975, 1337
Sau3AI	GATC	9 cut(s)	39, 44, 466, 733, 856, 899, 1063, 1296, 1384
Sau96I	GGNCC	2 cut(s)	68, 806
SchI	GAGTC	5 cut(s)	214, 553, 685, 870, 1233
SfaNI	GCATC	4 cut(s)	400, 417, 481, 1327
SfcI	CTRYAG	1 cut(s)	1341
SinI	GGWCC	1 cut(s)	806
SmiMI	CAYNNNNRTG	2 cut(s)	506, 647
SmlI	CTYRAG	2 cut(s)	191, 891
SmoI	CTYRAG	2 cut(s)	191, 891
Sse9I	AATT	6 cut(s)	60, 72, 111, 342, 687, 1159
SsiI	CCGC	7 cut(s)	97, 264, 292, 494, 536, 820, 984
SspMI	CTAG	2 cut(s)	978, 1068
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	5 cut(s)	586, 594, 935, 997, 1202
TaiI	ACGT	2 cut(s)	14, 817
TaqI	TCGA	3 cut(s)	364, 859, 864
TasI	AATT	6 cut(s)	60, 72, 111, 342, 687, 1159
TatI	WGTACW	2 cut(s)	1001, 1048
TauI	GCSGC	2 cut(s)	267, 295
TfiI	GAWTC	2 cut(s)	160, 235
Tru1I	TTAA	4 cut(s)	929, 941, 992, 1232
Tru9I	TTAA	4 cut(s)	929, 941, 992, 1232
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	200, 1070
TseI	GCWGC	3 cut(s)	51, 974, 1336
Tsp45I	GTSAC	2 cut(s)	200, 1070
TspDTI	ATGAA	7 cut(s)	17, 21, 524, 699, 778, 927, 1160
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	589
Tth111I	GACNNNGTC	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	806
XapI	RAATTY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	2 cut(s)	978, 1068
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.