Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006803

Physical Location & Seq

Genomic Coordinates Forward (+)

1688763 .. 1696621

Gene Structure 7859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGGAGCGGAAAAGGCATAGAATTCTCATGGTTTCTGATTTTTTCTACCCCAACTTTGGTGGTGTGGAGAATCACATCTACTATCTTTCGCAATGCCTTCTCAAGCTTGGTCATAAGGTGGTGGTAATGACTCATGCATACCAGAATCGTTCTGGAGTGAGATATATGACAGGCGGCCTGAAAGTGTATTATGTACCATGGCGGCCGTTTCTTATGCAGAATACTTTTCCAACATTTTACGGGACACTTCCAATTGTGAGGACTATCCTTATTCGAGAGAATATATCGTTGGTACATGGGCATCAAGCCTTCTCAACTCTTTGCCACGAGGCTTTGATGCACGCACGCACAATGGGTTATAAGGTTGTGTTTACAGATCATTCACTCTATGGTTTCGCTGATGCGGGAAGCATACACATGAACAAGGTCTTGCAGTTTACTTTAGCGGAAGTGAGTCAGGCCATTTGTGTTTCTCATACAAGCAAGGAGAACACTGTGCTACGGTCAGGTTTGCCACCAGAAAAGGTGTTTGTAATACCTAATGCTGTTGACACAGCTATGTTCAAGCCTGCACCAACGCGACTGAGTCGTCATGAAATTGTTATTGTTGTTATAAGTAGGTTGGTTTACCGGAAAGGTGCAGATCTGCTTGTTGAAGTTATTCCAGAAGTTTGCCGTTTATATCCCAATGTTCGTTTCATTGTTGGAGGAGATGGACCTAAACGTGTGCGGTTGGAAGAGATGAGGGAAAAACATTCCCTACAAGATCGAGTCGAAATGTTAGGTGCTGTTCAACACTCTCAAAAGCTTTTTTGCATAGCCATCTTAGAGGCTGCTAGTTGCGGGTTATTAACAGTCAGTACACGAGTAGGAGGTGTCCCAGAGGTTCTACCAGATGACATGGTTGTACTTGCAAAACCAGATCCTAGTGACATGGTTCAAGCAATAGAGAAGGCAATATCAATACTTCCCAACATTGACCCAGAACAAATGCACAATCGTCCTGCAGAGGATATTGAAGAGGTGCCTGATTTTGTTTTATCCCATGATCAAGATGATGGCATACCACGGGACAATAAGAACCAATGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009893 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016254 GO:0016740 GO:0016757 GO:0016758 GO:0017176 GO:0019222 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0051704 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glycos_transf_1 PIGA

Protein Analysis

366

Amino Acids

41.26

Weight (kDa)

7.27

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	20 - 187	3.5e-29	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	21 - 182	2.1e-13	Glycosyl transferase 4-like domain
PIGA	PF08288	46 - 135	5.2e-43	PIGA (GPI anchor biosynthesis)
Glycos_transf_1	PF00534	198 - 322	6.9e-18	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	202 - 321	1.8e-15	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45100 AT3G45100 AT3G45100
fragaria_vesca	FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430
malus_domestica	MD11G1006700.v1.1 MD11G1007700.v1.1
prunus_persica	Prupe.6G004900_v2.0.a1 Prupe.6G143200_v2.0.a1
pyrus_communis	pycom11g00520
rosa_chinensis	RchiOBHm_Chr5g0083231
rosa_laevigata	RLG00000037021
rosa_multiflora	Rmu_ssc0000026.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001260
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG532900 Rh5BG560100 Rh5CG582800 Rh5DG569400
rosa_wichuraiana	Rw5G050000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	363, 617
AasI	GACNNNNNNGTC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	1027
AccBSI	CCGCTC	1 cut(s)	10
AccII	CGCG	1 cut(s)	583
AciI	CCGC	7 cut(s)	10, 177, 205, 407, 449, 733, 846
AclWI	GGATC	1 cut(s)	920
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	24
AfaI	GTAC	4 cut(s)	198, 297, 865, 912
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	5 cut(s)	568, 659, 797, 944, 1022
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 683, 715
AluBI	AGCT	3 cut(s)	109, 560, 811
AluI	AGCT	3 cut(s)	109, 560, 811
AlwI	GGATC	1 cut(s)	920
AoxI	GGCC	3 cut(s)	178, 206, 462
ApeKI	GCWGC	1 cut(s)	836
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	663
AspS9I	GGNCC	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	1027
BauI	CACGAG	2 cut(s)	329, 867
BbvI	GCAGC	1 cut(s)	823
BccI	CCATC	3 cut(s)	710, 833, 1055
BceAI	ACGGC	2 cut(s)	193, 663
BclI	TGATCA	1 cut(s)	1051
BfaI	CTAG	2 cut(s)	840, 930
BfmI	CTRYAG	1 cut(s)	1008
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	3 cut(s)	178, 206, 837
BlsI	GCNGC	3 cut(s)	179, 207, 838
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	1 cut(s)	1029
BmsI	GCATC	3 cut(s)	313, 330, 394
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	200, 1070
BsaWI	WCCGGW	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	200, 1070
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	578
BseRI	GAGGAG	1 cut(s)	726
BseX3I	CGGCCG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	823
BsgI	GTGCAG	2 cut(s)	558, 663
Bsh1236I	CGCG	1 cut(s)	583
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	180, 208, 464
BshNI	GGYRCC	1 cut(s)	1027
BsiEI	CGRYCG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	634
BslFI	GGGAC	3 cut(s)	259, 866, 1088
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	3 cut(s)	259, 866, 1088
BsnI	GGCC	3 cut(s)	180, 208, 464
Bsp143I	GATC	5 cut(s)	379, 646, 769, 925, 1051
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	7 cut(s)	10, 177, 205, 407, 449, 733, 846
BspANI	GGCC	3 cut(s)	180, 208, 464
BspCNI	CTCAG	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	1 cut(s)	1029
BspMAI	CTGCAG	1 cut(s)	1012
BspPI	GGATC	1 cut(s)	920
BspT107I	GGYRCC	1 cut(s)	1027
BsrBI	CCGCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	200, 1070
BssMI	GATC	5 cut(s)	379, 646, 769, 925, 1051
BssSI	CACGAG	2 cut(s)	329, 867
BssT1I	CCWWGG	1 cut(s)	200
Bst2BI	CACGAG	2 cut(s)	329, 867
Bst4CI	ACNGT	3 cut(s)	499, 507, 859
Bst6I	CTCTTC	2 cut(s)	735, 1017
BstC8I	GCNNGC	3 cut(s)	345, 349, 573
BstDEI	CTNAG	2 cut(s)	587, 829
BstDSI	CCRYGG	2 cut(s)	200, 1070
BstFNI	CGCG	1 cut(s)	583
BstKTI	GATC	5 cut(s)	382, 649, 772, 928, 1054
BstMBI	GATC	5 cut(s)	379, 646, 769, 925, 1051
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	1008
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	823
BstX2I	RGATCY	2 cut(s)	646, 925
BstXI	CCANNNNNNTGG	1 cut(s)	1094
BstYI	RGATCY	2 cut(s)	646, 925
BstZI	CGGCCG	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	180, 208, 464
BtgI	CCRYGG	2 cut(s)	200, 1070
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	3 cut(s)	345, 349, 573
CciI	TCATGA	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	719
Csp6I	GTAC	4 cut(s)	197, 296, 864, 911
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	9 cut(s)	31, 137, 201, 299, 421, 596, 904, 937, 1049
CviQI	GTAC	4 cut(s)	197, 296, 864, 911
DdeI	CTNAG	2 cut(s)	587, 829
DpnI	GATC	5 cut(s)	381, 648, 771, 927, 1053
DpnII	GATC	5 cut(s)	379, 646, 769, 925, 1051
DrdI	GACNNNNNNGTC	1 cut(s)	591
DseDI	GACNNNNNNGTC	1 cut(s)	591
EaeI	YGGCCR	1 cut(s)	206
EagI	CGGCCG	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	735, 1017
EarI	CTCTTC	2 cut(s)	735, 1017
EclXI	CGGCCG	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	719
Eco52I	CGGCCG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	9 cut(s)	34, 140, 204, 302, 424, 599, 907, 940, 1052
FaqI	GGGAC	3 cut(s)	259, 866, 1088
FatI	CATG	9 cut(s)	30, 136, 200, 298, 420, 595, 903, 936, 1048
FauI	CCCGC	2 cut(s)	400, 839
FbaI	TGATCA	1 cut(s)	1051
Fnu4HI	GCNGC	3 cut(s)	178, 206, 837
Fsp4HI	GCNGC	3 cut(s)	178, 206, 837
FspBI	CTAG	2 cut(s)	840, 930
GluI	GCNGC	3 cut(s)	178, 206, 837
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	180, 208, 464
HapII	CCGG	1 cut(s)	634
Hin1II	CATG	9 cut(s)	34, 140, 204, 302, 424, 599, 907, 940, 1052
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	2 cut(s)	107, 809
HinfI	GANTC	6 cut(s)	73, 133, 148, 457, 589, 774
HpaII	CCGG	1 cut(s)	634
Hpy166II	GTNNAC	5 cut(s)	375, 441, 553, 631, 866
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	5 cut(s)	156, 278, 596, 668, 1055
Hpy8I	GTNNAC	5 cut(s)	375, 441, 553, 631, 866
HpyAV	CCTTC	3 cut(s)	110, 322, 949
HpyCH4III	ACNGT	3 cut(s)	499, 507, 859
HpyCH4IV	ACGT	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	587, 829
HpySE526I	ACGT	1 cut(s)	727
Hsp92II	CATG	9 cut(s)	34, 140, 204, 302, 424, 599, 907, 940, 1052
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	5 cut(s)	379, 646, 769, 925, 1051
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	1 cut(s)	823
LweI	GCATC	3 cut(s)	313, 330, 394
MaeI	CTAG	2 cut(s)	840, 930
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	1 cut(s)	932
MalI	GATC	5 cut(s)	381, 648, 771, 927, 1053
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	5 cut(s)	379, 646, 769, 925, 1051
MboII	GAAGA	2 cut(s)	752, 1034
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	2 cut(s)	646, 925
MluCI	AATT	3 cut(s)	24, 255, 600
MlyI	GAGTC	4 cut(s)	127, 466, 598, 783
MmeI	TCCRAC	3 cut(s)	257, 688, 717
MnlI	CCTC	9 cut(s)	255, 325, 704, 741, 826, 869, 880, 1006, 1018
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	1 cut(s)	854
MslI	CAYNNNNRTG	2 cut(s)	419, 560
MspI	CCGG	1 cut(s)	634
MunI	CAATTG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	5 cut(s)	379, 646, 769, 925, 1051
NlaIII	CATG	9 cut(s)	34, 140, 204, 302, 424, 599, 907, 940, 1052
NlaIV	GGNNCC	1 cut(s)	1029
NmuCI	GTSAC	1 cut(s)	932
NsiI	ATGCAT	1 cut(s)	142
PagI	TCATGA	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	73, 148
PflFI	GACNNNGTC	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	179, 207, 838
PleI	GAGTC	4 cut(s)	127, 465, 597, 782
PpsI	GAGTC	4 cut(s)	127, 465, 597, 782
PsiI	TTATAA	2 cut(s)	363, 617
PspN4I	GGNNCC	1 cut(s)	1029
PspPI	GGNCC	1 cut(s)	719
PstI	CTGCAG	1 cut(s)	1012
PsuI	RGATCY	2 cut(s)	646, 925
PsyI	GACNNNGTC	1 cut(s)	588
RsaI	GTAC	4 cut(s)	198, 297, 865, 912
RsaNI	GTAC	4 cut(s)	197, 296, 864, 911
RseI	CAYNNNNRTG	2 cut(s)	419, 560
SaqAI	TTAA	1 cut(s)	854
SatI	GCNGC	3 cut(s)	178, 206, 837
Sau3AI	GATC	5 cut(s)	379, 646, 769, 925, 1051
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	4 cut(s)	127, 466, 598, 783
SfaNI	GCATC	3 cut(s)	313, 330, 394
SfcI	CTRYAG	1 cut(s)	1008
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	419, 560
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	24, 255, 600
SsiI	CCGC	7 cut(s)	10, 177, 205, 407, 449, 733, 846
SspMI	CTAG	2 cut(s)	840, 930
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	499, 507, 859
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	3 cut(s)	277, 772, 777
TasI	AATT	3 cut(s)	24, 255, 600
TatI	WGTACW	2 cut(s)	863, 910
TauI	GCSGC	2 cut(s)	180, 208
TfiI	GAWTC	2 cut(s)	73, 148
Tru1I	TTAA	1 cut(s)	854
Tru9I	TTAA	1 cut(s)	854
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	932
TseI	GCWGC	1 cut(s)	836
Tsp45I	GTSAC	1 cut(s)	932
TspDTI	ATGAA	3 cut(s)	437, 612, 691
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	2 cut(s)	840, 930
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.