AT3G45180

Ubiquitin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017891
Physical Location & Seq
Reverse (-)
16538237 .. 16539244
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45180.1

Sequence Viewer

Length: 222 bp
ATGATAGAGGTGGTGCTTAATGATCGGCTTGGGAAGAAGGTGAGAGTGAAGTGCAACGAGGAAGACACCATCGGAGATCTCAAGAAGCTTGTGGCGGCCCAAACTGGAACCCGACCCGAAAAGATTCGGATCCAAAAATGGTACAACATCTACAAGGATCATATCCCTCTCAAGGACTACGAAATCCATGACGGCATGGGTCTCGAGCTCTACTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

73

Amino Acids

8.62

Weight (kDa)

7.83

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 11 - 71 2.7e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45180 AT3G45180
fragaria_vesca FvH4_3g32020
malus_domestica MD03G1119300.v1.1 MD04G1097200.v1.1 MD12G1118400.v1.1
prunus_persica Prupe.6G236300_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00021640
rosa_samantha Rh1AG265900 Rh4BG123800
rosa_wichuraiana Rw5G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclWI GGATC 3 cut(s) 124, 137, 165
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 88, 208
AluI AGCT 2 cut(s) 88, 208
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 3 cut(s) 124, 137, 165
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 203
BamHI GGATCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 210
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BcoDI GTCTC 1 cut(s) 206
BglII AGATCT 1 cut(s) 76
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 109, 131
BpiI GAAGAC 1 cut(s) 69
BpuEI CTTGAG 2 cut(s) 65, 155
BsaBI GATNNNNATC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 109
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 4 cut(s) 22, 76, 129, 157
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 109, 131
BspPI GGATC 3 cut(s) 124, 137, 165
BspTNI GGTCTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 109
BssMI GATC 4 cut(s) 22, 76, 129, 157
BstKTI GATC 4 cut(s) 25, 79, 132, 160
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 4 cut(s) 22, 76, 129, 157
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 76, 129
BstYI RGATCY 2 cut(s) 76, 129
BsuRI GGCC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 188, 196
CviJI RGCY 4 cut(s) 28, 88, 98, 208
CviKI_1 RGCY 4 cut(s) 28, 88, 98, 208
CviQI GTAC 1 cut(s) 142
DpnI GATC 4 cut(s) 24, 78, 131, 159
DpnII GATC 4 cut(s) 22, 76, 129, 157
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 2 cut(s) 191, 199
FaiI YATR 3 cut(s) 162, 189, 197
FatI CATG 2 cut(s) 187, 195
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 2 cut(s) 191, 199
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 74, 129
Hpy188III TCNNGA 2 cut(s) 82, 203
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 54
Hsp92II CATG 2 cut(s) 191, 199
Kzo9I GATC 4 cut(s) 22, 76, 129, 157
LpnPI CCDG 1 cut(s) 90
MalI GATC 4 cut(s) 24, 78, 131, 159
MboI GATC 4 cut(s) 22, 76, 129, 157
MboII GAAGA 2 cut(s) 46, 74
MflI RGATCY 2 cut(s) 76, 129
MhlI GDGCHC 1 cut(s) 210
MnlI CCTC 2 cut(s) 52, 177
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 18
NdeII GATC 4 cut(s) 22, 76, 129, 157
NlaIII CATG 2 cut(s) 191, 199
NlaIV GGNNCC 2 cut(s) 109, 131
PaeR7I CTCGAG 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 109, 131
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 2 cut(s) 76, 129
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 22, 76, 129, 157
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 210
SetI ASST 4 cut(s) 12, 42, 90, 210
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 3 cut(s) 80, 170, 203
SmoI CTYRAG 3 cut(s) 80, 170, 203
SsiI CCGC 1 cut(s) 95
SstI GAGCTC 1 cut(s) 210
TaqI TCGA 1 cut(s) 204
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.