MD03G1119300.v1.1

Ubiquitin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0017891
Physical Location & Seq
Forward (+)
10913186 .. 10913602
417 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1119300.v1.1.491

Sequence Viewer

Length: 417 bp
ATGACAATTCCAAATTCCAATAGAATCAAAAGAGCAAAAAGACGAGCATACCCTTACTGGTACATTGTAGAACCTTCCAGATCCTCCCGTTCAGCATTTAAGCGCTCACAGCGGTTCCATTGTCAGCCTCAGGGCTTCGCAGCCTACAATCGGAGGAGGAGAATGCGACGGAGCGGCGGCTGCGGCGGAGAGAAGATGATCGAGGTGGTGCTGAACGACAGGCTGGGAAAGAAGGTCCGGGTGAAATGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTGGTGGCGGCCCAGACCGGGACCCGACCCGATAAGATCCGAATCCAGAAATGGTACAACATTTACAAGGATCACATCACTCTCAAGGATTACGAGATCCACGACGGCATGGGCCTCGAGCTCTACTATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

139

Amino Acids

16.35

Weight (kDa)

10.16

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 76 - 135 2e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45180 AT3G45180
fragaria_vesca FvH4_3g32020
malus_domestica MD03G1119300.v1.1 MD04G1097200.v1.1 MD12G1118400.v1.1
prunus_persica Prupe.6G236300_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00021640
rosa_samantha Rh1AG265900 Rh4BG123800
rosa_wichuraiana Rw5G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 174
AciI CCGC 6 cut(s) 112, 174, 177, 183, 186, 290
AclWI GGATC 4 cut(s) 75, 313, 360, 373
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 2 cut(s) 62, 338
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 150, 300
AluBI AGCT 2 cut(s) 283, 403
AluI AGCT 2 cut(s) 283, 403
Alw21I GWGCWC 1 cut(s) 405
AlwI GGATC 4 cut(s) 75, 313, 360, 373
Ama87I CYCGRG 1 cut(s) 398
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 2 cut(s) 291, 394
ApeKI GCWGC 2 cut(s) 140, 180
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 4 cut(s) 235, 292, 303, 394
AsuC2I CCSGG 2 cut(s) 239, 301
AsuHPI GGTGA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 2 cut(s) 235, 303
AxyI CCTNAGG 1 cut(s) 129
BanII GRGCYC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 152, 167
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BcnI CCSGG 2 cut(s) 239, 301
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 6 cut(s) 141, 175, 178, 181, 184, 291
BlsI GCNGC 6 cut(s) 142, 176, 179, 182, 185, 292
Bme1390I CCNGG 2 cut(s) 239, 301
Bme18I GGWCC 2 cut(s) 235, 303
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 4 cut(s) 235, 292, 303, 394
BmiI GGNNCC 3 cut(s) 116, 304, 305
BmrFI CCNGG 2 cut(s) 239, 301
BpuEI CTTGAG 2 cut(s) 260, 350
BpuMI CCSGG 2 cut(s) 239, 301
BsaBI GATNNNNATC 1 cut(s) 323
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 300
Bse1I ACTGG 1 cut(s) 62
Bse21I CCTNAGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 150, 300
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 169, 172
BseXI GCAGC 2 cut(s) 152, 167
BseYI CCCAGC 1 cut(s) 223
BshFI GGCC 2 cut(s) 293, 396
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 2 cut(s) 238, 300
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 150, 300
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 2 cut(s) 293, 396
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 5 cut(s) 80, 198, 318, 352, 378
BspACI CCGC 6 cut(s) 112, 174, 177, 183, 186, 290
BspANI GGCC 2 cut(s) 293, 396
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 116, 304, 305
BspPI GGATC 4 cut(s) 75, 313, 360, 373
BsrBI CCGCTC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 62
BssMI GATC 5 cut(s) 80, 198, 318, 352, 378
BstDEI CTNAG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 5 cut(s) 83, 201, 321, 355, 381
BstMBI GATC 5 cut(s) 80, 198, 318, 352, 378
BstMWI GCNNNNNNNGC 3 cut(s) 109, 180, 183
BstSCI CCNGG 2 cut(s) 237, 299
BstV1I GCAGC 2 cut(s) 152, 167
BstX2I RGATCY 3 cut(s) 80, 318, 378
BstYI RGATCY 3 cut(s) 80, 318, 378
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 2 cut(s) 293, 396
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 4 cut(s) 235, 292, 303, 394
Csp6I GTAC 2 cut(s) 61, 337
CviAII CATG 1 cut(s) 391
CviJI RGCY 9 cut(s) 127, 135, 143, 180, 223, 283, 293, 396, 403
CviKI_1 RGCY 9 cut(s) 127, 135, 143, 180, 223, 283, 293, 396, 403
CviQI GTAC 2 cut(s) 61, 337
DdeI CTNAG 1 cut(s) 129
DpnI GATC 5 cut(s) 82, 200, 320, 354, 380
DpnII GATC 5 cut(s) 80, 198, 318, 352, 378
EciI GGCGGA 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 235, 303
Eco47III AGCGCT 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 403
Eco81I CCTNAGG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 405
FaeI CATG 1 cut(s) 394
FaiI YATR 3 cut(s) 49, 392, 411
FaqI GGGAC 1 cut(s) 316
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 6 cut(s) 141, 175, 178, 181, 184, 291
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 6 cut(s) 141, 175, 178, 181, 184, 291
GlaI GCGC 1 cut(s) 104
GluI GCNGC 6 cut(s) 141, 175, 178, 181, 184, 291
GsaI CCCAGC 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 2 cut(s) 293, 396
HapII CCGG 2 cut(s) 238, 300
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 394
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 2 cut(s) 24, 324
HpaII CCGG 2 cut(s) 238, 300
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 153, 323
Hpy188III TCNNGA 3 cut(s) 78, 277, 328
Hpy99I CGWCG 2 cut(s) 171, 389
HpyAV CCTTC 2 cut(s) 84, 226
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 180, 183
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 1 cut(s) 394
HspAI GCGC 1 cut(s) 103
KflI GGGWCCC 1 cut(s) 303
Kzo9I GATC 5 cut(s) 80, 198, 318, 352, 378
LmnI GCTCC 1 cut(s) 171
Lsp1109I GCAGC 2 cut(s) 152, 167
MalI GATC 5 cut(s) 82, 200, 320, 354, 380
MbiI CCGCTC 1 cut(s) 174
MboI GATC 5 cut(s) 80, 198, 318, 352, 378
MboII GAAGA 1 cut(s) 205
MflI RGATCY 3 cut(s) 80, 318, 378
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 2 cut(s) 6, 13
MnlI CCTC 8 cut(s) 94, 138, 147, 150, 196, 247, 284, 407
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 2 cut(s) 238, 300
MspR9I CCNGG 2 cut(s) 239, 301
Mva1269I GAATGC 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 109, 180, 183
NciI CCSGG 2 cut(s) 239, 301
NdeII GATC 5 cut(s) 80, 198, 318, 352, 378
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 3 cut(s) 116, 304, 305
PaeR7I CTCGAG 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PctI GAATGC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 24, 324
PkrI GCNGC 6 cut(s) 142, 176, 179, 182, 185, 292
PpuMI RGGWCCY 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 116, 304, 305
PspPI GGNCC 4 cut(s) 235, 292, 303, 394
PspPPI RGGWCCY 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 398
PsuI RGATCY 3 cut(s) 80, 318, 378
RsaI GTAC 2 cut(s) 62, 338
RsaNI GTAC 2 cut(s) 61, 337
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 6 cut(s) 141, 175, 178, 181, 184, 291
Sau3AI GATC 5 cut(s) 80, 198, 318, 352, 378
Sau96I GGNCC 4 cut(s) 235, 292, 303, 394
ScrFI CCNGG 2 cut(s) 239, 301
SduI GDGCHC 1 cut(s) 405
SetI ASST 6 cut(s) 76, 207, 237, 276, 285, 405
Sfr274I CTCGAG 1 cut(s) 398
SinI GGWCC 2 cut(s) 235, 303
SlaI CTCGAG 1 cut(s) 398
SmlI CTYRAG 3 cut(s) 275, 365, 398
SmoI CTYRAG 3 cut(s) 275, 365, 398
Sse9I AATT 2 cut(s) 6, 13
SsiI CCGC 6 cut(s) 112, 174, 177, 183, 186, 290
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 237, 299
TaqI TCGA 2 cut(s) 201, 399
TasI AATT 2 cut(s) 6, 13
TauI GCSGC 4 cut(s) 177, 180, 186, 293
TfiI GAWTC 2 cut(s) 24, 324
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 2 cut(s) 140, 180
TspGWI ACGGA 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 235, 303
XapI RAATTY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.