Rroxscaffold_1G00021640

Ubiquitin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017891
Physical Location & Seq
Forward (+)
26607254 .. 26607475
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021640.1

Sequence Viewer

Length: 222 bp
ATGATTGAGGTGGTTCTGAACGATCGGCTTGGAAAGAAGGTGCGGGTGAAGTGCAATGAGGACGACACCATCGGAGATCTGAAGAAGCTGGTTGAAACTCAGACCGGAACCCGAGCAGATAAGATCCGAATCCAGAAGTGGTACAATATTTACAAGGATCACATCACTCTTAAGGATTATGAGATCCACGACGGCATGGGCCTCGAACTCTATTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

73

Amino Acids

8.66

Weight (kDa)

6.72

Isoelectric Point (pI)

19.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 11 - 71 6.1e-07 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45180 AT3G45180
fragaria_vesca FvH4_3g32020
malus_domestica MD03G1119300.v1.1 MD04G1097200.v1.1 MD12G1118400.v1.1
prunus_persica Prupe.6G236300_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00021640
rosa_samantha Rh1AG265900 Rh4BG123800
rosa_wichuraiana Rw5G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 43
AclWI GGATC 3 cut(s) 118, 165, 178
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 143
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwI GGATC 3 cut(s) 118, 165, 178
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 111
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BfrI CTTAAG 1 cut(s) 170
BglII AGATCT 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 128
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 105
BsnI GGCC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 111
Bsp143I GATC 5 cut(s) 22, 76, 123, 157, 183
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 3 cut(s) 118, 165, 178
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 61
BssMI GATC 5 cut(s) 22, 76, 123, 157, 183
BstAFI CTTAAG 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 99
BstKTI GATC 5 cut(s) 25, 79, 126, 160, 186
BstMBI GATC 5 cut(s) 22, 76, 123, 157, 183
BstMCI CGRYCG 1 cut(s) 25
BstX2I RGATCY 3 cut(s) 76, 123, 183
BstYI RGATCY 3 cut(s) 76, 123, 183
BsuRI GGCC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 28, 88, 201
CviKI_1 RGCY 3 cut(s) 28, 88, 201
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 99
DpnI GATC 5 cut(s) 24, 78, 125, 159, 185
DpnII GATC 5 cut(s) 22, 76, 123, 157, 183
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 111
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 180, 197
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 105
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 129
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 5 cut(s) 18, 74, 81, 102, 128
Hpy188III TCNNGA 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 5 cut(s) 22, 76, 123, 157, 183
LpnPI CCDG 3 cut(s) 74, 118, 146
MalI GATC 5 cut(s) 24, 78, 125, 159, 185
MboI GATC 5 cut(s) 22, 76, 123, 157, 183
MboII GAAGA 1 cut(s) 94
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 3 cut(s) 76, 123, 183
MluCI AATT 1 cut(s) 217
MnlI CCTC 2 cut(s) 52, 212
MseI TTAA 1 cut(s) 171
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 217
NdeII GATC 5 cut(s) 22, 76, 123, 157, 183
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 129
Ple19I CGATCG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 3 cut(s) 76, 123, 183
PvuI CGATCG 1 cut(s) 25
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 5 cut(s) 22, 76, 123, 157, 183
Sau96I GGNCC 1 cut(s) 199
SetI ASST 3 cut(s) 12, 42, 90
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 43
SspI AATATT 1 cut(s) 148
TaqI TCGA 1 cut(s) 204
TasI AATT 1 cut(s) 217
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
Vha464I CTTAAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.