Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0017891

Physical Location & Seq

Genomic Coordinates Reverse (-)

17992365 .. 17994528

Gene Structure 2164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1097200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATCGAGGTGGTTCTAAACGACCGTCTGGGGAAGAAGGTGAAGGTGAAGTGCAACGAGGATGACACCATCGGCGACCTGAAGAAGCTGGTGGCGGCTCAGACGGGCACCCGCTCCGACAAGATTCGGATTCAGAAGTGGTACAACGTCTACAAGGACCACATCACTCTCAAGGACTACGAGATTCATGACGGCATGGGCCTCGAGCTCTACTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0019538 GO:0031386 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

74

Amino Acids

8.54

Weight (kDa)

7.82

Isoelectric Point (pI)

19.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	11 - 71	1.8e-06	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45180 AT3G45180
fragaria_vesca	FvH4_3g32020
malus_domestica	MD03G1119300.v1.1 MD04G1097200.v1.1 MD12G1118400.v1.1
prunus_persica	Prupe.6G236300_v2.0.a1
rosa_roxburghii	Rroxscaffold_1G00021640
rosa_samantha	Rh1AG265900 Rh4BG123800
rosa_wichuraiana	Rw5G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	95, 112
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	143
AluBI	AGCT	2 cut(s)	88, 208
AluI	AGCT	2 cut(s)	88, 208
Alw21I	GWGCWC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	157, 199
AsuHPI	GGTGA	2 cut(s)	52, 58
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	157, 199
BmiI	GGNNCC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	110, 210
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	95, 112
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	114
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	157, 199
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	188, 196
CviJI	RGCY	4 cut(s)	88, 98, 201, 208
CviKI_1	RGCY	4 cut(s)	88, 98, 201, 208
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	2 cut(s)	191, 199
FaiI	YATR	2 cut(s)	189, 197
FatI	CATG	2 cut(s)	187, 195
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	191, 199
HinfI	GANTC	3 cut(s)	124, 130, 184
HphI	GGTGA	2 cut(s)	52, 58
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	102, 118, 129, 135
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	31, 37
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	191, 199
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	3 cut(s)	14, 74, 92
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	5
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	46, 94
MhlI	GDGCHC	2 cut(s)	110, 210
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	52, 212
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	191, 199
NlaIV	GGNNCC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	124, 130, 184
PkrI	GCNGC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	157, 199
PspXI	VCTCGAGB	1 cut(s)	203
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	157, 199
SduI	GDGCHC	2 cut(s)	110, 210
SetI	ASST	7 cut(s)	12, 42, 48, 81, 90, 150, 210
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	170, 203
SmoI	CTYRAG	2 cut(s)	170, 203
SsiI	CCGC	2 cut(s)	95, 112
SstI	GAGCTC	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	6, 204
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	3 cut(s)	124, 130, 184
TspDTI	ATGAA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.