FvH4_3g32020

Ubiquitin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017891
Physical Location & Seq
Reverse (-)
27165734 .. 27166255
522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32020.t1

Sequence Viewer

Length: 222 bp
ATGATTGAGGTGGTGCTGAACGATCGGGTAGGAAAGAAGGTGCGGGTGAAGTGCAACGAGGACGACACCATCGGAGACCTGAAGAAGCTGGTGGCGGCTCAGACCGGAACCCGATCTGATAAGATCCGAATCCAGAAGTGGTACACTATTTACAAGGACCACATCACTCTCAAGGATTACGAGATCCACGACGGCATGGGGCTCGAACTCTATTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

74

Amino Acids

8.56

Weight (kDa)

7.83

Isoelectric Point (pI)

19.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 11 - 71 3.9e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45180 AT3G45180
fragaria_vesca FvH4_3g32020
malus_domestica MD03G1119300.v1.1 MD04G1097200.v1.1 MD12G1118400.v1.1
prunus_persica Prupe.6G236300_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00021640
rosa_samantha Rh1AG265900 Rh4BG123800
rosa_wichuraiana Rw5G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 43, 95
AclWI GGATC 2 cut(s) 118, 178
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 143
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 2 cut(s) 118, 178
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 204
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 4 cut(s) 22, 113, 123, 183
BspACI CCGC 2 cut(s) 43, 95
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 2 cut(s) 118, 178
BspTNI GGTCTC 1 cut(s) 69
BssMI GATC 4 cut(s) 22, 113, 123, 183
BstDEI CTNAG 1 cut(s) 99
BstKTI GATC 4 cut(s) 25, 116, 126, 186
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 4 cut(s) 22, 113, 123, 183
BstMCI CGRYCG 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 123, 183
BstYI RGATCY 2 cut(s) 123, 183
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 88, 98, 202
CviKI_1 RGCY 3 cut(s) 88, 98, 202
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 99
DpnI GATC 4 cut(s) 24, 115, 125, 185
DpnII GATC 4 cut(s) 22, 113, 123, 183
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 1 cut(s) 199
FaiI YATR 1 cut(s) 197
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 105
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 129
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 4 cut(s) 74, 102, 118, 128
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 144
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 4 cut(s) 22, 113, 123, 183
LpnPI CCDG 4 cut(s) 74, 92, 118, 146
MalI GATC 4 cut(s) 24, 115, 125, 185
MboI GATC 4 cut(s) 22, 113, 123, 183
MboII GAAGA 1 cut(s) 94
MflI RGATCY 2 cut(s) 123, 183
MhlI GDGCHC 1 cut(s) 204
MnlI CCTC 1 cut(s) 52
MspI CCGG 1 cut(s) 105
NdeII GATC 4 cut(s) 22, 113, 123, 183
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 97
Ple19I CGATCG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 2 cut(s) 123, 183
PvuI CGATCG 1 cut(s) 25
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 22, 113, 123, 183
Sau96I GGNCC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 204
SetI ASST 4 cut(s) 12, 42, 81, 90
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SsiI CCGC 2 cut(s) 43, 95
TaqI TCGA 1 cut(s) 204
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.