Rh1AG265900

NAD(P)H-binding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
49204387 .. 49207081
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG265900.1

Sequence Viewer

Length: 423 bp
ATGATCGAGGTGGTGATGAACAATCGTCTGGGGAAGAAGGTAAAGATGAAGGGCAACAAGGACAACACCATCAGCTTCCTAGAAGCGAGAGGTCCTTCCTCCTCTGATTTCTTCTCCTACTCAAAATCCTGGCATGGAAGAACAAATGCTGCCGTCTCTTTTCTCCCACTCAATTCATCATCTTCCCTTCTTTTCCATTCCATTTCCAGATTCGCCAAAATCAACCTTTCTCAACCTGACAGTTCATTCTCAACGGTTGATAGTTTTGGGACAGCTAACCATGGCGATGCATGCCGTAAAGTTGGTGTGAAGAGGCCTGGTGGGTTGAGAAATGAACCTTCAACAGGAAATCTTGTAATGGAACCAAAGGACACTATCTGGCGGCACCATCTCCAGAGGTCTGGTGGTGGAAGTAGCTATTGA

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

10.14

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45180 AT3G45180
fragaria_vesca FvH4_3g32020
malus_domestica MD03G1119300.v1.1 MD04G1097200.v1.1 MD12G1118400.v1.1
prunus_persica Prupe.6G236300_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00021640
rosa_samantha Rh1AG265900 Rh4BG123800
rosa_wichuraiana Rw5G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 384
AciI CCGC 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 342
AjnI CCWGG 2 cut(s) 128, 316
AluBI AGCT 3 cut(s) 75, 275, 417
AluI AGCT 3 cut(s) 75, 275, 417
Alw26I GTCTC 1 cut(s) 160
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 77, 396
BceAI ACGGC 2 cut(s) 137, 279
BciT130I CCWGG 2 cut(s) 130, 318
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 80
BisI GCNGC 2 cut(s) 150, 383
BlsI GCNGC 2 cut(s) 151, 384
Bme1390I CCNGG 2 cut(s) 130, 318
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 363, 386
BmrFI CCNGG 2 cut(s) 130, 318
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 344
BseBI CCWGG 2 cut(s) 130, 318
BseDI CCNNGG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 384
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 160
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 280
BspACI CCGC 1 cut(s) 382
BspANI GGCC 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 363, 386
BspT107I GGYRCC 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 130, 318
Bst4CI ACNGT 2 cut(s) 242, 256
Bst6I CTCTTC 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 342
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 2 cut(s) 130, 318
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 128, 316
BstV1I GCAGC 1 cut(s) 136
BstXI CCANNNNNNTGG 1 cut(s) 401
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 280
BtgZI GCGATG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 3 cut(s) 134, 281, 291
CviJI RGCY 4 cut(s) 75, 275, 316, 417
CviKI_1 RGCY 4 cut(s) 75, 275, 316, 417
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 128, 316
EcoT14I CCWWGG 1 cut(s) 280
EcoT22I ATGCAT 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 3 cut(s) 137, 284, 294
FaiI YATR 3 cut(s) 135, 282, 292
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 133, 280, 290
Fnu4HI GCNGC 2 cut(s) 150, 383
Fsp4HI GCNGC 2 cut(s) 150, 383
FspBI CTAG 1 cut(s) 80
GluI GCNGC 2 cut(s) 150, 383
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 1 cut(s) 316
Hin1II CATG 3 cut(s) 137, 284, 294
HinfI GANTC 1 cut(s) 210
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 207, 394
HpyAV CCTTC 5 cut(s) 31, 43, 105, 197, 348
HpyCH4III ACNGT 2 cut(s) 242, 256
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
Hsp92II CATG 3 cut(s) 137, 284, 294
Kzo9I GATC 1 cut(s) 3
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 80
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 5 cut(s) 46, 103, 150, 174, 322
MluCI AATT 1 cut(s) 172
MnlI CCTC 5 cut(s) 83, 109, 112, 306, 390
Mph1103I ATGCAT 1 cut(s) 292
MslI CAYNNNNRTG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 130, 318
MvaI CCWGG 2 cut(s) 130, 318
MwoI GCNNNNNNNGC 1 cut(s) 291
NcoI CCATGG 1 cut(s) 280
NdeII GATC 1 cut(s) 3
NlaIII CATG 3 cut(s) 137, 284, 294
NlaIV GGNNCC 2 cut(s) 363, 386
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 1 cut(s) 294
PaeI GCATGC 1 cut(s) 294
PceI AGGCCT 1 cut(s) 316
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 2 cut(s) 151, 384
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 128, 316
PspGI CCWGG 2 cut(s) 128, 316
PspN4I GGNNCC 2 cut(s) 363, 386
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 285
SatI GCNGC 2 cut(s) 150, 383
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 130, 318
SfaNI GCATC 1 cut(s) 277
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 285
SphI GCATGC 1 cut(s) 294
Sse9I AATT 1 cut(s) 172
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 1 cut(s) 382
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 128, 316
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 242, 256
TaqI TCGA 1 cut(s) 6
TasI AATT 1 cut(s) 172
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 1 cut(s) 210
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 5 cut(s) 32, 62, 165, 234, 348
VpaK11BI GGWCC 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 342
XceI RCATGY 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.