AT3G45280

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011717
Physical Location & Seq
Reverse (-)
16610655 .. 16613521
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45280.1

Sequence Viewer

Length: 804 bp
ATGCCGGTCATTGATATCATCTTCAGAGTCGACGAGATTTGCAAAAAGTACGACAAGTACGACATCGACAAACACCGTGAGATCGGCGCTTCCGGCGACGATGCCTTCTCTCGCCTCTTCACCTCCATTGATTCCGACATCGAAGCAGTTCTTCGTAAAGCGGAGTTGGCATCAACGGAGAAGAATAGAGCTGCCGCGGTGGCTATGAATGCTGAGGTTCGAAGGACAAAAGCGCGATTAGCTGAAGATGTTGTTAAGCTTCAGAAACTCGCTGTTAAGAAGATTAAAGGGCTCACGAGAGAGGAACGAGAATCTCGGTGCGATCTAGTTATCGCTTTAGCCGATAGGCTTCAAGCGATACCTGATGGAAATGAACATGGAGCAAAACAAGCAAATAGTGATTGGGGAGGTGCTTCTGCACCTAACAAGAACATCAAGTTTGATATGTCTGAGGAAGACATGGATGATGGATTTTTCCAGCAAAGTGAAGAATCCAGCCAGTTTCGACAAGAATATGAGATGAGAAGAAAGAAACAGGATGAGGGTCTTGATATCATATCAGAAGGTTTGGATGCACTAAAGAACTTAGCGCGTGACATGAACGAGGAACTTGACAAGCAAGTCCCATTGATGGAAGAAATGGAAACAAAGGTCGATGGAGCCACTTCGGATTTGAAGAATACCAACGTTCGGCTCAAGAAACAGCTTGTGCAGATGCGATCCAGCCGAAACTTCTGCATCGACATTATTCTTCTCTGTGTGATCCTTGGAATTGTCTCTTACATTTACAATGCTCTAAACTAA

Protein Analysis

267

Amino Acids

30.28

Weight (kDa)

5.12

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 210 - 260 7.5e-12 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011717)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45280 AT3G45280 AT3G45280
fragaria_vesca FvH4_3g32730 FvH4_3g32730
malus_domestica MD11G1132900.v1.1
prunus_persica Prupe.6G098500_v2.0.a1
pyrus_communis pycom11g10970
rosa_chinensis RchiOBHm_Chr5g0059791
rosa_laevigata RLG00000035330
rosa_roxburghii Rroxscaffold_1G00020770
rosa_rugosa Rorug05G0325200 Rorug05G0325300 Rorug05G0325400
rosa_samantha Rh5AG390600 Rh5BG402100 Rh5CG426100 Rh5DG418500
rosa_wichuraiana Rw5G036740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 620
AccI GTMKAC 1 cut(s) 30
AccII CGCG 3 cut(s) 197, 235, 592
AciI CCGC 3 cut(s) 161, 195, 197
AclI AACGTT 1 cut(s) 687
AclWI GGATC 2 cut(s) 714, 757
AcuI CTGAAG 3 cut(s) 7, 245, 264
AfaI GTAC 2 cut(s) 50, 59
AfiI CCNNNNNNNGG 2 cut(s) 631, 690
AgsI TTSAA 2 cut(s) 353, 676
AluBI AGCT 4 cut(s) 191, 242, 259, 706
AluI AGCT 4 cut(s) 191, 242, 259, 706
Alw26I GTCTC 1 cut(s) 781
AlwI GGATC 2 cut(s) 714, 757
ApeKI GCWGC 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 3 cut(s) 89, 235, 592
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 220
BanII GRGCYC 1 cut(s) 294
BauI CACGAG 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 178
BccI CCATC 4 cut(s) 359, 461, 625, 650
BcgI CGANNNNNNTGC 2 cut(s) 717, 751
BcoDI GTCTC 1 cut(s) 781
BfaI CTAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 2 cut(s) 192, 195
BlsI GCNGC 2 cut(s) 193, 196
BmiI GGNNCC 1 cut(s) 661
BmsI GCATC 5 cut(s) 91, 179, 562, 705, 747
BpiI GAAGAC 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 195, 766
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 690
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 499
BseDI CCNNGG 2 cut(s) 195, 766
BseGI GGATG 3 cut(s) 469, 544, 577
BseLI CCNNNNNNNGG 2 cut(s) 631, 690
BseMII CTCAG 2 cut(s) 204, 441
BseNI ACTGG 1 cut(s) 499
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 2 cut(s) 402, 731
Bsh1236I CGCG 3 cut(s) 197, 235, 592
BsiSI CCGG 2 cut(s) 5, 93
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 2 cut(s) 631, 690
BsmAI GTCTC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 608
BsmI GAATGC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 4 cut(s) 81, 322, 719, 762
BspACI CCGC 3 cut(s) 161, 195, 197
BspCNI CTCAG 2 cut(s) 205, 442
BspFNI CGCG 3 cut(s) 197, 235, 592
BspLI GGNNCC 1 cut(s) 661
BspPI GGATC 2 cut(s) 714, 757
BspT104I TTCGAA 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 499
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 195, 766
BssMI GATC 4 cut(s) 81, 322, 719, 762
BssSI CACGAG 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 766
Bst2BI CACGAG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 213, 450, 586
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 3 cut(s) 469, 544, 577
BstFNI CGCG 3 cut(s) 197, 235, 592
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 3 cut(s) 89, 235, 592
BstKTI GATC 4 cut(s) 84, 325, 722, 765
BstMAI GTCTC 1 cut(s) 781
BstMBI GATC 4 cut(s) 81, 322, 719, 762
BstMWI GCNNNNNNNGC 6 cut(s) 93, 167, 200, 209, 239, 389
BstUI CGCG 3 cut(s) 197, 235, 592
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 3 cut(s) 469, 544, 577
CfoI GCGC 3 cut(s) 89, 235, 592
Cfr10I RCCGGY 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 198
Csp6I GTAC 2 cut(s) 49, 58
CviAII CATG 3 cut(s) 377, 460, 598
CviQI GTAC 2 cut(s) 49, 58
DdeI CTNAG 3 cut(s) 213, 450, 586
DpnI GATC 4 cut(s) 83, 324, 721, 764
DpnII GATC 4 cut(s) 81, 322, 719, 762
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 766
Eco24I GRGCYC 1 cut(s) 294
Eco32I GATATC 2 cut(s) 16, 553
Eco57I CTGAAG 3 cut(s) 7, 245, 264
EcoRV GATATC 2 cut(s) 16, 553
EcoT14I CCWWGG 1 cut(s) 766
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 3 cut(s) 380, 463, 601
FaiI YATR 7 cut(s) 206, 378, 446, 461, 516, 557, 599
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 608
FatI CATG 3 cut(s) 376, 459, 597
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 192, 195
FokI GGATG 3 cut(s) 476, 551, 584
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 2 cut(s) 192, 195
FspBI CTAG 1 cut(s) 326
GlaI GCGC 3 cut(s) 88, 234, 591
GluI GCNGC 2 cut(s) 192, 195
HaeII RGCGCY 1 cut(s) 90
HapII CCGG 2 cut(s) 5, 93
HhaI GCGC 3 cut(s) 89, 235, 592
Hin1II CATG 3 cut(s) 380, 463, 601
Hin6I GCGC 3 cut(s) 87, 233, 590
HinP1I GCGC 3 cut(s) 87, 233, 590
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 4 cut(s) 27, 131, 311, 491
HpaII CCGG 2 cut(s) 5, 93
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 6 cut(s) 26, 136, 264, 451, 562, 670
Hpy188III TCNNGA 3 cut(s) 295, 548, 697
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 35, 101
HpyAV CCTTC 3 cut(s) 115, 216, 557
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 5 cut(s) 42, 419, 575, 712, 738
HpyF10VI GCNNNNNNNGC 6 cut(s) 93, 167, 200, 209, 239, 389
HpyF3I CTNAG 3 cut(s) 213, 450, 586
HpySE526I ACGT 1 cut(s) 687
Hsp92II CATG 3 cut(s) 380, 463, 601
HspAI GCGC 3 cut(s) 87, 233, 590
KspI CCGCGG 1 cut(s) 198
Kzo9I GATC 4 cut(s) 81, 322, 719, 762
LmnI GCTCC 2 cut(s) 380, 659
LpnPI CCDG 8 cut(s) 18, 106, 375, 491, 508, 512, 521, 736
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 5 cut(s) 91, 179, 562, 705, 747
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 1 cut(s) 593
MalI GATC 4 cut(s) 83, 324, 721, 764
MboI GATC 4 cut(s) 81, 322, 719, 762
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 1 cut(s) 771
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 125, 133, 208, 295, 401, 445, 535, 598
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 3 cut(s) 255, 276, 285
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 5, 93
Mva1269I GAATGC 1 cut(s) 214
MvnI CGCG 3 cut(s) 197, 235, 592
MwoI GCNNNNNNNGC 6 cut(s) 93, 167, 200, 209, 239, 389
NdeII GATC 4 cut(s) 81, 322, 719, 762
NlaIII CATG 3 cut(s) 380, 463, 601
NlaIV GGNNCC 1 cut(s) 661
NmuCI GTSAC 1 cut(s) 593
NspV TTCGAA 1 cut(s) 220
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 339
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 3 cut(s) 131, 311, 491
PkrI GCNGC 2 cut(s) 193, 196
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 687
PspN4I GGNNCC 1 cut(s) 661
RsaI GTAC 2 cut(s) 50, 59
RsaNI GTAC 2 cut(s) 49, 58
SacII CCGCGG 1 cut(s) 198
SalI GTCGAC 1 cut(s) 29
SaqAI TTAA 3 cut(s) 255, 276, 285
SatI GCNGC 2 cut(s) 192, 195
Sau3AI GATC 4 cut(s) 81, 322, 719, 762
SchI GAGTC 1 cut(s) 36
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 5 cut(s) 91, 179, 562, 705, 747
Sfr303I CCGCGG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 220
SgrBI CCGCGG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 1 cut(s) 771
SsiI CCGC 3 cut(s) 161, 195, 197
SspMI CTAG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 690
TaqI TCGA 7 cut(s) 30, 66, 141, 220, 505, 654, 741
TasI AATT 1 cut(s) 771
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 3 cut(s) 131, 311, 491
Tru1I TTAA 3 cut(s) 255, 276, 285
Tru9I TTAA 3 cut(s) 255, 276, 285
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 3 cut(s) 221, 387, 614
TspGWI ACGGA 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.