Rh5CG426100

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011717
Physical Location & Seq
Reverse (-)
58936924 .. 58949579
12656 bp
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UTR
Exon/CDS
Intron
Rh5CG426100.1

Sequence Viewer

Length: 624 bp
ATGGAAAGTAATAGGGCTGCTGCGGTGGCCACTAATGTGGAGATTCGTCGGACTAAGGCCCGATTGATGGAAGAACTTCCTAAGCTGCGTAAATTGGCTCAGAAGAAGGTTAAAGGGTTGTCCAAAGAAGAACTAGAAACACGTAATGAGCTGGTTCTTGCATTGCCAGAGAGGATTCAAGAAATACCAGATGGGACAGAAACTGCTCCCAAAAAAGCTGGAATTTGGGCACCTTCCGCCTCTCATAAAAATATCAAGTTTGACTCATCAGATGGAAATTTTGAGAGTGAGTTTTTTCAGCAAACTGAAGAGTCAAATCAATTTCGGCAAGAGTATGAAATGCGGAAGAAGAGACAGGATGAAGGTCTAGATATCATATCAGAAGGATTGGGTACGTTGAAAAATTTGGCCGAAGATATGAATGAGGAAATGGACCGACAGGTCCCGTTAATTGATGAGATAGATACAAAGGTGGATAAGGTCACATCTGACATAAAATCTAATAATGTGAGGCTCAAGGAAAATCTTTACAAGATGAGATCGAGCCGAAATTTCTGCATTGACATTATTCTGCTGTGTATAATACTGGGAATTGCCTTATATTTATACAATTTACTAAGATGA

Protein Analysis

207

Amino Acids

23.85

Weight (kDa)

5.74

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 150 - 200 1.3e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011717)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45280 AT3G45280 AT3G45280
fragaria_vesca FvH4_3g32730 FvH4_3g32730
malus_domestica MD11G1132900.v1.1
prunus_persica Prupe.6G098500_v2.0.a1
pyrus_communis pycom11g10970
rosa_chinensis RchiOBHm_Chr5g0059791
rosa_laevigata RLG00000035330
rosa_roxburghii Rroxscaffold_1G00020770
rosa_rugosa Rorug05G0325200 Rorug05G0325300 Rorug05G0325400
rosa_samantha Rh5AG390600 Rh5BG402100 Rh5CG426100 Rh5DG418500
rosa_wichuraiana Rw5G036740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 3 cut(s) 23, 237, 343
AcoI YGGCCR 2 cut(s) 27, 408
AcsI RAATTY 4 cut(s) 222, 277, 403, 550
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 2 cut(s) 179, 400
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 3 cut(s) 85, 151, 218
AluI AGCT 3 cut(s) 85, 151, 218
Alw26I GTCTC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 3 cut(s) 27, 57, 408
ApeKI GCWGC 3 cut(s) 17, 20, 85
ApoI RAATTY 4 cut(s) 222, 277, 403, 550
Asp700I GAANNNNTTC 1 cut(s) 75
AspS9I GGNCC 3 cut(s) 58, 433, 442
AvaII GGWCC 2 cut(s) 433, 442
BaeGI GKGCMC 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 456, 489
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 229
BbvI GCAGC 3 cut(s) 4, 7, 72
BccI CCATC 3 cut(s) 61, 185, 266
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 2 cut(s) 134, 368
BisI GCNGC 3 cut(s) 18, 21, 86
BlsI GCNGC 3 cut(s) 19, 22, 87
Bme18I GGWCC 2 cut(s) 433, 442
BmgT120I GGNCC 3 cut(s) 58, 433, 442
BmiI GGNNCC 2 cut(s) 231, 444
BmrI ACTGGG 1 cut(s) 596
BmuI ACTGGG 1 cut(s) 596
Bpu10I CCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 161
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 3 cut(s) 4, 7, 72
BshFI GGCC 3 cut(s) 29, 59, 410
BshNI GGYRCC 1 cut(s) 229
BslFI GGGAC 2 cut(s) 208, 428
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 346
BsmFI GGGAC 2 cut(s) 208, 428
BsnI GGCC 3 cut(s) 29, 59, 410
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 1 cut(s) 539
BspACI CCGC 3 cut(s) 23, 237, 343
BspANI GGCC 3 cut(s) 29, 59, 410
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 231, 444
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 591
BssMI GATC 1 cut(s) 539
Bst6I CTCTTC 2 cut(s) 303, 344
BstBAI YACGTR 1 cut(s) 143
BstDEI CTNAG 4 cut(s) 54, 81, 99, 617
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 1 cut(s) 542
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 1 cut(s) 539
BstMWI GCNNNNNNNGC 2 cut(s) 26, 236
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 4, 7, 72
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 3 cut(s) 29, 59, 410
BtsCI GGATG 1 cut(s) 364
CaiI CAGNNNCTG 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 58, 433, 442
Csp6I GTAC 1 cut(s) 393
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 4 cut(s) 54, 81, 99, 617
DpnI GATC 1 cut(s) 541
DpnII GATC 1 cut(s) 539
DrdI GACNNNNNNGTC 1 cut(s) 440
DseDI GACNNNNNNGTC 1 cut(s) 440
EaeI YGGCCR 2 cut(s) 27, 408
Eam1104I CTCTTC 2 cut(s) 303, 344
EarI CTCTTC 2 cut(s) 303, 344
EciI GGCGGA 1 cut(s) 226
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 433, 442
Eco57I CTGAAG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 442
EcoRV GATATC 1 cut(s) 373
FaiI YATR 8 cut(s) 246, 336, 377, 419, 494, 581, 601, 607
FaqI GGGAC 2 cut(s) 208, 428
Fnu4HI GCNGC 3 cut(s) 18, 21, 86
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 3 cut(s) 18, 21, 86
FspBI CTAG 2 cut(s) 134, 368
GluI GCNGC 3 cut(s) 18, 21, 86
HaeIII GGCC 3 cut(s) 29, 59, 410
HinfI GANTC 4 cut(s) 43, 175, 263, 311
Hpy188I TCNGA 5 cut(s) 51, 102, 271, 382, 490
Hpy188III TCNNGA 2 cut(s) 179, 368
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 4 cut(s) 100, 243, 356, 377
HpyCH4IV ACGT 2 cut(s) 142, 395
HpyCH4V TGCA 2 cut(s) 161, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 236
HpyF3I CTNAG 4 cut(s) 54, 81, 99, 617
HpySE526I ACGT 2 cut(s) 142, 395
Kzo9I GATC 1 cut(s) 539
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 7 cut(s) 137, 180, 201, 204, 341, 425, 572
Lsp1109I GCAGC 3 cut(s) 4, 7, 72
MaeI CTAG 2 cut(s) 134, 368
MaeII ACGT 2 cut(s) 142, 395
MaeIII GTNAC 1 cut(s) 481
MalI GATC 1 cut(s) 541
MboI GATC 1 cut(s) 539
MboII GAAGA 7 cut(s) 83, 115, 140, 320, 358, 361, 425
MhlI GDGCHC 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 9 cut(s) 92, 222, 277, 320, 403, 450, 550, 591, 610
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 257, 320
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 4 cut(s) 165, 250, 418, 504
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 75
MscI TGGCCA 1 cut(s) 29
MseI TTAA 2 cut(s) 111, 449
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 26, 236
NdeII GATC 1 cut(s) 539
NlaIV GGNNCC 2 cut(s) 231, 444
NmuCI GTSAC 1 cut(s) 481
OliI CACNNNNGTG 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 43, 175
PkrI GCNGC 3 cut(s) 19, 22, 87
PleI GAGTC 2 cut(s) 257, 319
PpsI GAGTC 2 cut(s) 257, 319
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 442
Psp5II RGGWCCY 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 231, 444
PspPI GGNCC 3 cut(s) 58, 433, 442
PspPPI RGGWCCY 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 2 cut(s) 111, 449
SatI GCNGC 3 cut(s) 18, 21, 86
Sau3AI GATC 1 cut(s) 539
Sau96I GGNCC 3 cut(s) 58, 433, 442
SchI GAGTC 2 cut(s) 257, 320
SduI GDGCHC 1 cut(s) 232
SinI GGWCC 2 cut(s) 433, 442
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 9 cut(s) 92, 222, 277, 320, 403, 450, 550, 591, 610
SsiI CCGC 3 cut(s) 23, 237, 343
SspMI CTAG 2 cut(s) 134, 368
TaiI ACGT 2 cut(s) 145, 398
TaqI TCGA 1 cut(s) 542
TaqII GACCGA 1 cut(s) 450
TasI AATT 9 cut(s) 92, 222, 277, 320, 403, 450, 550, 591, 610
TfiI GAWTC 2 cut(s) 43, 175
Tru1I TTAA 2 cut(s) 111, 449
Tru9I TTAA 2 cut(s) 111, 449
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 3 cut(s) 17, 20, 85
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 351, 375, 434
VpaK11BI GGWCC 2 cut(s) 433, 442
XapI RAATTY 4 cut(s) 222, 277, 403, 550
XbaI TCTAGA 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 2 cut(s) 134, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.