Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011717

Physical Location & Seq

Genomic Coordinates Reverse (-)

28041601 .. 28043881

Gene Structure 2281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCGGAAGACGAGACAGGATCAAGGTCTAGATATCATATCAGAAGGATTGGGTACGCTGAAAGAATTGGCACAAGATATGAATGAGGAAATGGATCGACAGGTCCCGTTAATTGATGAGATAGATACGAAGGTGGATAAGGTGACATCTGACATTAAAAATAATAATGTGAGGCTTAAGGAAAATCTTTACAAGATGAGATCGAGCCGAAATTTCTGCATTGATATTACTTTGCTGTGTATAATTCTGGGGATCGCCTTATATCTATACAATATACTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

95

Amino Acids

10.93

Weight (kDa)

5.39

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	37 - 87	1.2e-10	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45280 AT3G45280 AT3G45280
fragaria_vesca	FvH4_3g32730 FvH4_3g32730
malus_domestica	MD11G1132900.v1.1
prunus_persica	Prupe.6G098500_v2.0.a1
pyrus_communis	pycom11g10970
rosa_chinensis	RchiOBHm_Chr5g0059791
rosa_laevigata	RLG00000035330
rosa_roxburghii	Rroxscaffold_1G00020770
rosa_rugosa	Rorug05G0325200 Rorug05G0325300 Rorug05G0325400
rosa_samantha	Rh5AG390600 Rh5BG402100 Rh5CG426100 Rh5DG418500
rosa_wichuraiana	Rw5G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	3 cut(s)	27, 102, 260
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	55
AflII	CTTAAG	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	3 cut(s)	27, 102, 260
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	103
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BbsI	GAAGAC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	29
BfrI	CTTAAG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	89
Bsp143I	GATC	4 cut(s)	19, 94, 200, 252
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	3 cut(s)	27, 102, 260
BspTI	CTTAAG	1 cut(s)	176
BssMI	GATC	4 cut(s)	19, 94, 200, 252
BstAFI	CTTAAG	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	278
BstKTI	GATC	4 cut(s)	22, 97, 203, 255
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	4 cut(s)	19, 94, 200, 252
BstV2I	GAAGAC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	54
CviJI	RGCY	2 cut(s)	175, 207
CviKI_1	RGCY	2 cut(s)	175, 207
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	4 cut(s)	21, 96, 202, 254
DpnII	GATC	4 cut(s)	19, 94, 200, 252
Eco32I	GATATC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	34
FaiI	YATR	6 cut(s)	38, 80, 242, 262, 268, 275
FaqI	GGGAC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	43, 151
Hpy188III	TCNNGA	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	38, 124
HpyCH4V	TGCA	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	278
Kzo9I	GATC	4 cut(s)	19, 94, 200, 252
LpnPI	CCDG	3 cut(s)	2, 86, 233
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	4 cut(s)	21, 96, 202, 254
MboI	GATC	4 cut(s)	19, 94, 200, 252
MboII	GAAGA	1 cut(s)	19
MluCI	AATT	4 cut(s)	65, 111, 211, 243
MnlI	CCTC	2 cut(s)	79, 165
MseI	TTAA	3 cut(s)	110, 156, 177
MspCI	CTTAAG	1 cut(s)	176
NdeII	GATC	4 cut(s)	19, 94, 200, 252
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	110, 156, 177
Sau3AI	GATC	4 cut(s)	19, 94, 200, 252
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	4 cut(s)	28, 105, 135, 144
SinI	GGWCC	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	65, 111, 211, 243
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	29
TaqI	TCGA	2 cut(s)	97, 203
TasI	AATT	4 cut(s)	65, 111, 211, 243
Tru1I	TTAA	3 cut(s)	110, 156, 177
Tru9I	TTAA	3 cut(s)	110, 156, 177
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	95
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	28
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.