Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011717

Physical Location & Seq

Genomic Coordinates Forward (+)

38984036 .. 38984245

Gene Structure 210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0325300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCCATGGCAGTCCCGTTCTATCTCGGCTCCTACTTCGTGATTGACATGTGCATAGGAAGCTTGATCCTTTTCAGCTGGAAGTTATGGAACAAACAACAGGCTGAGGATTTAGCACCGGCGGTTGCATCTGGTCTCATTTGTGGCGAGTCTATGTGGGGTGTTCCAGCTGCGATGATCTTGCCAATGTCAAAGCACCAATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

5.46

Isoelectric Point (pI)

67.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 60	3.2e-13	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45280 AT3G45280 AT3G45280
fragaria_vesca	FvH4_3g32730 FvH4_3g32730
malus_domestica	MD11G1132900.v1.1
prunus_persica	Prupe.6G098500_v2.0.a1
pyrus_communis	pycom11g10970
rosa_chinensis	RchiOBHm_Chr5g0059791
rosa_laevigata	RLG00000035330
rosa_roxburghii	Rroxscaffold_1G00020770
rosa_rugosa	Rorug05G0325200 Rorug05G0325300 Rorug05G0325400
rosa_samantha	Rh5AG390600 Rh5BG402100 Rh5CG426100 Rh5DG418500
rosa_wichuraiana	Rw5G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	3
AflIII	ACRYGT	1 cut(s)	48
AluBI	AGCT	3 cut(s)	63, 78, 170
AluI	AGCT	3 cut(s)	63, 78, 170
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BcoDI	GTCTC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	31
BmsI	GCATC	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	6
Bse118I	RCCGGY	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	66, 177
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	66, 177
BssT1I	CCWWGG	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	69, 180
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	66, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	118
CviAII	CATG	3 cut(s)	7, 49, 207
CviJI	RGCY	6 cut(s)	5, 30, 63, 78, 104, 170
CviKI_1	RGCY	6 cut(s)	5, 30, 63, 78, 104, 170
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	2 cut(s)	68, 179
DpnII	GATC	2 cut(s)	66, 177
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	10, 52, 210
FaiI	YATR	7 cut(s)	8, 50, 56, 88, 155, 204, 208
FatI	CATG	3 cut(s)	6, 48, 206
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	3 cut(s)	10, 52, 210
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	54, 128, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	10, 52, 210
Kzo9I	GATC	2 cut(s)	66, 177
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	5 cut(s)	64, 86, 117, 132, 180
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	137
MalI	GATC	2 cut(s)	68, 179
MboI	GATC	2 cut(s)	66, 177
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	1 cut(s)	100
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	78, 170
MspI	CCGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	66, 177
NlaIII	CATG	3 cut(s)	10, 52, 210
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	1 cut(s)	52
PciI	ACATGT	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PscI	ACATGT	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	31
PvuII	CAGCTG	2 cut(s)	78, 170
RseI	CAYNNNNRTG	1 cut(s)	201
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	66, 177
SchI	GAGTC	1 cut(s)	158
SetI	ASST	3 cut(s)	65, 80, 172
SfaNI	GCATC	1 cut(s)	137
SgrAI	CRCCGGYG	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	201
SsiI	CCGC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	6
TseI	GCWGC	1 cut(s)	170
XceI	RCATGY	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.