Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011717

Physical Location & Seq

Genomic Coordinates Reverse (-)

39002695 .. 39005013

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0325400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGAGTTACGTGTGATCCAAGAGAAGCTTAATGATTTTATGAGGATGCCTTACTCCCCCGATCACTATGAGGAACAACGTCTGCTTCATCGCAGCAAGAAAAATATTGGAGGCAGTGGTCAAGGGCCTTATGGCTTAAGGATGGAGATCATAATTTTAGCCTTCTTCCATCGCAAGGCTACTAATAGACGCAGTCGAAACGCAATTAAGGGATTACAAGATGCTGATGGCATATGGCAGACTGACCCTGAAGTGATTAAGGGTTTATTGCTGAATTACTACCAACAGATCTTTACTACTGAGGGAACAAATGATGAAGCTATAGATGATATTATTTCTGCAACTTCTCCAAAAGTTACAGTTGGTATGAACGAAGCACTGCTTTTACCCTACACAGATGATGAAATAAAATCTGCACTTTTCCAAATGCATCCCTCGAAGAGTCTTGGACCAGACGTCAGCTATGCAGTCTTGATAAATGGGGAGGCGACATCTAAAATTCTTCCAACCAAATGTATTAGGCAGGGCGATCCTCTCTCGCCCTACCTTTTCATTCTATGTGCTGAGGGCCTTTCAGCTCTGATTACTAAATTGGTAACTAATGGCAGTATGGTGGGTCTGAAGATGTGTCCGCAGGCTCCCACACTTCATCATTTATTCTTCGCCGATGATAGTCTCTTATTTGAAGCGACTACTACTGCAGAATGCTTACAGGTTAGAAACATTTTAAATTGTTATGAGCAAGCTTCGGGGCAGAAAATAAACTTCCAAAAAAGCATTGTTGTATTTAGTAGAAATGTGCCGGAGGCTTTTCAGATAAGCCTTGCCACAATCTTGGAGGTCAAGTGTGTGGATGAGCATGACAGGTACTTGAGCCTCCCTCTTAGGGTAGGTAAATCAAAAACAGCTATTTTTGCCTATATAAAGGAGAAGCTCACTAAGAAGTTAGTGGGATGGAGGTCGAAGATCTTGAGTTCTGCAGGTAAGGAAATTTTGATAAAAGCTGTTGCTCAAACCATGCCTCTATATGCCATGAATTGTTACCTATTACCAAAGGGACTATGTGATGAGATTCGTCAATTATGTGCTTCATTCTTCTGGGAGGGTGGTATGGGTTTCAAGAATATATATGCATACAATTTAGCAATGCTTGCCAAGCAGGGTTGGAGACTTGTCTCAAACCCAAACTCACTCATTGCTAAGTTGTACAAAGCTAGATACTTTCCAAATTGCACCTTTTGGGAAGCTGATGTAGGAGACTCCCCATCCTTCTCTTGGCGTAGTATTTTGAATGGGAGGCATGTGTTAAAAGCTGACGTAGAACCCAAGATAGGCTCTCGTGGAGCCCGGACAAACGAGGCAGATTTACAGTTAAAAACGGCCTATTGGGTGGCACGAAATTCTGTTCTTGGCAATCTACTTACTAGTACTTCTGATGGTGACCCTTTTGGTACACTGTGGAAAACAATTTGGAAAGCCCGAGTACCAGGCAAAGTCCAAATATGCATATGGAGAGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

507

Amino Acids

56.89

Weight (kDa)

9.09

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	158 - 262	1.3e-07	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45280 AT3G45280 AT3G45280
fragaria_vesca	FvH4_3g32730 FvH4_3g32730
malus_domestica	MD11G1132900.v1.1
prunus_persica	Prupe.6G098500_v2.0.a1
pyrus_communis	pycom11g10970
rosa_chinensis	RchiOBHm_Chr5g0059791
rosa_laevigata	RLG00000035330
rosa_roxburghii	Rroxscaffold_1G00020770
rosa_rugosa	Rorug05G0325200 Rorug05G0325300 Rorug05G0325400
rosa_samantha	Rh5AG390600 Rh5BG402100 Rh5CG426100 Rh5DG418500
rosa_wichuraiana	Rw5G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	459
Acc36I	ACCTGC	1 cut(s)	971
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	2 cut(s)	10, 524
AcsI	RAATTY	3 cut(s)	498, 990, 1399
AcuI	CTGAAG	2 cut(s)	270, 641
AcyI	GRCGYC	1 cut(s)	456
AfaI	GTAC	5 cut(s)	869, 1208, 1429, 1453, 1485
AfiI	CCNNNNNNNGG	4 cut(s)	175, 886, 1275, 1331
AflII	CTTAAG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	686, 1120, 1291
AhdI	GACNNNNNGTC	1 cut(s)	455
AhlI	ACTAGT	1 cut(s)	1424
AjnI	CCWGG	1 cut(s)	1486
Alw26I	GTCTC	4 cut(s)	680, 1162, 1180, 1251
AlwI	GGATC	2 cut(s)	10, 524
Ama87I	CYCGRG	1 cut(s)	1479
AoxI	GGCC	3 cut(s)	125, 568, 1380
ApeKI	GCWGC	2 cut(s)	93, 1517
ApoI	RAATTY	3 cut(s)	498, 990, 1399
AspS9I	GGNCC	3 cut(s)	125, 449, 568
AsuC2I	CCSGG	1 cut(s)	1348
AsuHPI	GGTGA	1 cut(s)	1451
AvaI	CYCGRG	1 cut(s)	1479
AvaII	GGWCC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	1348
BauI	CACGAG	1 cut(s)	1338
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	105, 1504
BccI	CCATC	6 cut(s)	136, 177, 221, 948, 1273, 1430
BceAI	ACGGC	1 cut(s)	1395
BciT130I	CCWGG	1 cut(s)	1488
BcnI	CCSGG	1 cut(s)	1348
BcoDI	GTCTC	4 cut(s)	680, 1162, 1180, 1251
BcuI	ACTAGT	1 cut(s)	1424
BfaI	CTAG	2 cut(s)	1215, 1425
BfmI	CTRYAG	3 cut(s)	321, 699, 978
BfrI	CTTAAG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	971
BglII	AGATCT	2 cut(s)	288, 966
BisI	GCNGC	2 cut(s)	94, 1518
BlsI	GCNGC	2 cut(s)	95, 1519
BmcAI	AGTACT	1 cut(s)	1429
Bme1390I	CCNGG	2 cut(s)	1348, 1488
Bme18I	GGWCC	1 cut(s)	449
BmeRI	GACNNNNNGTC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	1479
BmgT120I	GGNCC	3 cut(s)	125, 449, 568
BmiI	GGNNCC	2 cut(s)	639, 1345
BmrFI	CCNGG	2 cut(s)	1348, 1488
BmsI	GCATC	3 cut(s)	36, 211, 439
BplI	GAGNNNNNCTC	2 cut(s)	865, 897
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	892, 991
BpuMI	CCSGG	1 cut(s)	1348
BsaAI	YACGTR	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 886, 1275, 1331
Bse3DI	GCAATG	2 cut(s)	1152, 1194
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	1488
BseGI	GGATG	6 cut(s)	51, 147, 430, 859, 959, 1265
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	4 cut(s)	175, 886, 1275, 1331
BseMI	GCAATG	2 cut(s)	1152, 1194
BseMII	CTCAG	2 cut(s)	291, 555
BseXI	GCAGC	2 cut(s)	105, 1504
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	127, 570, 1382
BsiHKCI	CYCGRG	1 cut(s)	1479
BsiSI	CCGG	2 cut(s)	803, 1348
BslFI	GGGAC	1 cut(s)	1071
BslI	CCNNNNNNNGG	4 cut(s)	175, 886, 1275, 1331
BsmAI	GTCTC	4 cut(s)	680, 1162, 1180, 1251
BsmFI	GGGAC	1 cut(s)	1071
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	3 cut(s)	127, 570, 1382
BsoBI	CYCGRG	1 cut(s)	1479
Bsp1286I	GDGCHC	1 cut(s)	1348
Bsp1407I	TGTACA	1 cut(s)	1206
Bsp143I	GATC	6 cut(s)	15, 61, 147, 288, 529, 966
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	3 cut(s)	127, 570, 1382
BspCNI	CTCAG	2 cut(s)	292, 556
BspLI	GGNNCC	2 cut(s)	639, 1345
BspMAI	CTGCAG	2 cut(s)	703, 982
BspMI	ACCTGC	1 cut(s)	971
BspPI	GGATC	2 cut(s)	10, 524
BspTI	CTTAAG	1 cut(s)	136
BsrDI	GCAATG	2 cut(s)	1152, 1194
BsrGI	TGTACA	1 cut(s)	1206
BssMI	GATC	6 cut(s)	15, 61, 147, 288, 529, 966
BssNI	GRCGYC	1 cut(s)	456
BssSI	CACGAG	1 cut(s)	1338
Bst2BI	CACGAG	1 cut(s)	1338
Bst2UI	CCWGG	1 cut(s)	1488
Bst4CI	ACNGT	3 cut(s)	361, 1371, 1458
Bst6I	CTCTTC	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	456
BstAFI	CTTAAG	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	1151
BstAUI	TGTACA	1 cut(s)	1206
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	636, 744, 1152
BstDEI	CTNAG	5 cut(s)	300, 564, 884, 939, 1200
BstEII	GGTNACC	1 cut(s)	1439
BstF5I	GGATG	6 cut(s)	51, 147, 430, 859, 959, 1265
BstKTI	GATC	6 cut(s)	18, 64, 150, 291, 532, 969
BstMAI	GTCTC	4 cut(s)	680, 1162, 1180, 1251
BstMBI	GATC	6 cut(s)	15, 61, 147, 288, 529, 966
BstMWI	GCNNNNNNNGC	3 cut(s)	914, 1151, 1156
BstNI	CCWGG	1 cut(s)	1488
BstNSI	RCATGY	1 cut(s)	1304
BstPI	GGTNACC	1 cut(s)	1439
BstSCI	CCNGG	2 cut(s)	1346, 1486
BstSFI	CTRYAG	3 cut(s)	321, 699, 978
BstV1I	GCAGC	2 cut(s)	105, 1504
BstX2I	RGATCY	2 cut(s)	288, 966
BstXI	CCANNNNNNTGG	1 cut(s)	835
BstYI	RGATCY	2 cut(s)	288, 966
BsuRI	GGCC	3 cut(s)	127, 570, 1382
BtgZI	GCGATG	2 cut(s)	74, 155
BtsCI	GGATG	6 cut(s)	51, 147, 430, 859, 959, 1265
BtsI	GCAGTG	2 cut(s)	121, 377
BtsIMutI	CAGTG	3 cut(s)	121, 377, 1454
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	3 cut(s)	636, 744, 1152
Cfr13I	GGNCC	3 cut(s)	125, 449, 568
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	5 cut(s)	868, 1207, 1428, 1452, 1484
CviAII	CATG	4 cut(s)	860, 1018, 1033, 1301
CviQI	GTAC	5 cut(s)	868, 1207, 1428, 1452, 1484
DdeI	CTNAG	5 cut(s)	300, 564, 884, 939, 1200
DpnI	GATC	6 cut(s)	17, 63, 149, 290, 531, 968
DpnII	GATC	6 cut(s)	15, 61, 147, 288, 529, 966
DraI	TTTAAA	1 cut(s)	729
DriI	GACNNNNNGTC	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	434
Eam1105I	GACNNNNNGTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	1348
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	270, 641
Eco88I	CYCGRG	1 cut(s)	1479
Eco91I	GGTNACC	1 cut(s)	1439
EcoO109I	RGGNCCY	2 cut(s)	125, 568
EcoO65I	GGTNACC	1 cut(s)	1439
EcoRII	CCWGG	1 cut(s)	1486
EcoT22I	ATGCAT	3 cut(s)	432, 1135, 1508
EcoT38I	GRGCYC	1 cut(s)	1348
FaeI	CATG	4 cut(s)	863, 1021, 1036, 1304
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 366, 398
FaqI	GGGAC	1 cut(s)	1071
FatI	CATG	4 cut(s)	859, 1017, 1032, 1300
FauNDI	CATATG	2 cut(s)	233, 1508
Fnu4HI	GCNGC	2 cut(s)	94, 1518
FokI	GGATG	6 cut(s)	58, 154, 417, 866, 966, 1252
FriOI	GRGCYC	1 cut(s)	1348
Fsp4HI	GCNGC	2 cut(s)	94, 1518
FspBI	CTAG	2 cut(s)	1215, 1425
GluI	GCNGC	2 cut(s)	94, 1518
HaeIII	GGCC	3 cut(s)	127, 570, 1382
HapII	CCGG	2 cut(s)	803, 1348
HgaI	GACGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	4 cut(s)	863, 1021, 1036, 1304
HindIII	AAGCTT	2 cut(s)	26, 744
HinfI	GANTC	3 cut(s)	442, 1072, 1259
HpaII	CCGG	2 cut(s)	803, 1348
HphI	GGTGA	1 cut(s)	1451
Hpy166II	GTNNAC	1 cut(s)	1454
Hpy188I	TCNGA	4 cut(s)	582, 621, 816, 1435
Hpy188III	TCNNGA	3 cut(s)	472, 970, 1120
Hpy8I	GTNNAC	1 cut(s)	1454
HpyAV	CCTTC	2 cut(s)	172, 1279
HpyCH4III	ACNGT	3 cut(s)	361, 1371, 1458
HpyCH4IV	ACGT	4 cut(s)	10, 79, 456, 1317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	914, 1151, 1156
HpyF3I	CTNAG	5 cut(s)	300, 564, 884, 939, 1200
HpySE526I	ACGT	4 cut(s)	10, 79, 456, 1317
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	863, 1021, 1036, 1304
Kzo9I	GATC	6 cut(s)	15, 61, 147, 288, 529, 966
LmnI	GCTCC	2 cut(s)	643, 1343
Lsp1109I	GCAGC	2 cut(s)	105, 1504
LweI	GCATC	3 cut(s)	36, 211, 439
MaeI	CTAG	2 cut(s)	1215, 1425
MaeII	ACGT	4 cut(s)	10, 79, 456, 1317
MaeIII	GTNAC	5 cut(s)	6, 355, 595, 1040, 1439
MalI	GATC	6 cut(s)	17, 63, 149, 290, 531, 968
MboI	GATC	6 cut(s)	15, 61, 147, 288, 529, 966
MboII	GAAGA	7 cut(s)	157, 451, 494, 634, 652, 976, 1087
MflI	RGATCY	2 cut(s)	288, 966
MhlI	GDGCHC	1 cut(s)	1348
MlyI	GAGTC	2 cut(s)	451, 1253
MmeI	TCCRAC	2 cut(s)	530, 1145
Mph1103I	ATGCAT	3 cut(s)	432, 1135, 1508
MseI	TTAA	7 cut(s)	30, 137, 207, 258, 728, 1307, 1373
MspCI	CTTAAG	1 cut(s)	136
MspI	CCGG	2 cut(s)	803, 1348
MspR9I	CCNGG	2 cut(s)	1348, 1488
Mva1269I	GAATGC	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	1488
MwoI	GCNNNNNNNGC	3 cut(s)	914, 1151, 1156
NciI	CCSGG	1 cut(s)	1348
NdeI	CATATG	2 cut(s)	233, 1508
NdeII	GATC	6 cut(s)	15, 61, 147, 288, 529, 966
NlaIII	CATG	4 cut(s)	863, 1021, 1036, 1304
NlaIV	GGNNCC	2 cut(s)	639, 1345
NmuCI	GTSAC	1 cut(s)	1439
NsiI	ATGCAT	3 cut(s)	432, 1135, 1508
NspI	RCATGY	1 cut(s)	1304
PctI	GAATGC	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	1072
PflFI	GACNNNGTC	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	95, 1519
PleI	GAGTC	2 cut(s)	450, 1253
PpsI	GAGTC	2 cut(s)	450, 1253
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	1486
PspEI	GGTNACC	1 cut(s)	1439
PspGI	CCWGG	1 cut(s)	1486
PspN4I	GGNNCC	2 cut(s)	639, 1345
PspPI	GGNCC	3 cut(s)	125, 449, 568
PstI	CTGCAG	2 cut(s)	703, 982
PsuI	RGATCY	2 cut(s)	288, 966
PsyI	GACNNNGTC	1 cut(s)	192
RsaI	GTAC	5 cut(s)	869, 1208, 1429, 1453, 1485
RsaNI	GTAC	5 cut(s)	868, 1207, 1428, 1452, 1484
SaqAI	TTAA	7 cut(s)	30, 137, 207, 258, 728, 1307, 1373
SatI	GCNGC	2 cut(s)	94, 1518
Sau3AI	GATC	6 cut(s)	15, 61, 147, 288, 529, 966
Sau96I	GGNCC	3 cut(s)	125, 449, 568
ScaI	AGTACT	1 cut(s)	1429
SchI	GAGTC	2 cut(s)	451, 1253
ScrFI	CCNGG	2 cut(s)	1348, 1488
SduI	GDGCHC	1 cut(s)	1348
SfaNI	GCATC	3 cut(s)	36, 211, 439
SfcI	CTRYAG	3 cut(s)	321, 699, 978
SinI	GGWCC	1 cut(s)	449
SmlI	CTYRAG	3 cut(s)	136, 871, 970
SmoI	CTYRAG	3 cut(s)	136, 871, 970
SpeI	ACTAGT	1 cut(s)	1424
SsiI	CCGC	1 cut(s)	632
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	2 cut(s)	1215, 1425
StyD4I	CCNGG	2 cut(s)	1346, 1486
TaaI	ACNGT	3 cut(s)	361, 1371, 1458
TaiI	ACGT	4 cut(s)	13, 82, 459, 1320
TaqI	TCGA	3 cut(s)	196, 437, 962
TatI	WGTACW	2 cut(s)	1206, 1427
TfiI	GAWTC	1 cut(s)	1072
Tru1I	TTAA	7 cut(s)	30, 137, 207, 258, 728, 1307, 1373
Tru9I	TTAA	7 cut(s)	30, 137, 207, 258, 728, 1307, 1373
TscAI	CASTG	3 cut(s)	121, 384, 1461
TseFI	GTSAC	1 cut(s)	1439
TseI	GCWGC	2 cut(s)	93, 1517
Tsp45I	GTSAC	1 cut(s)	1439
TspDTI	ATGAA	8 cut(s)	77, 330, 383, 417, 541, 638, 1049, 1080
TspRI	CASTG	3 cut(s)	121, 384, 1461
Tth111I	GACNNNGTC	1 cut(s)	192
Vha464I	CTTAAG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	3 cut(s)	498, 990, 1399
XceI	RCATGY	1 cut(s)	1304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1272
XspI	CTAG	2 cut(s)	1215, 1425
ZraI	GACGTC	1 cut(s)	457
ZrmI	AGTACT	1 cut(s)	1429
Zsp2I	ATGCAT	3 cut(s)	432, 1135, 1508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.