Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011717

Physical Location & Seq

Genomic Coordinates Forward (+)

12157940 .. 12162001

Gene Structure 4062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1132900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAGCGTGATCGACATTCTCTCCCGAGTCGACTCAATATGCAAAAAATACGACAAGTACGACGTCGAGAAGCACCGCGACCTCAATCCCGCCGGAGAAGATGCCTTCGCCCGTCACTACGCCCGCGTCGACGACGAAATCCAAGCCGCTCATCTGAAAGCCGAGAAGGCTGCGATGGAGAGTAATCGGGCTGTGGCGGTTGCGACGTATGTGGAGATTCGTCGGACCAAGGCTCGGTTGATGGAGGAACTTCCTAAGCTGCGCAAGTTGGCTCTGAAAAAGGTTAAAGGGCTATCCCCTGAAGAACTAGAAACACGTAGTGACCTGGTTTTTACACTGCCTGAGAGGATTCAGGAGATTCCAGATGGAACAGAAGCTGCAGCCAAAAAAGCTGGGGGTTGGGGAACTTCAGCATCCCATAAAAATATCAAATTTGATTCATCAGATGGGAACCTTGAAAGTGAATTTTTCCAGCAAACTGAAGAATCGAGTCAATTCAGGAAGGAGTATGAAATGCGGAAAATGAAACAGGATGAAGGTCTAGATATCATCTCTGAAGGATTGGGTACTTTGAAAGATTTGGCCCATGATATGCATGAGGAAATGGATCGACAAGTCCCACTAATTGATGAGATAGATACAAAGGTGGACAAGGTTACATCTGACATAAAAAGTAATAATGTTAGGCTTAAGGAAAATCTAATCAAGGTGAGGTCGAGCCGAAATTTCTGCATTGATATTATTTTGCTTTGTATTGTTCTGGGAATTGCCTTCTATCTATACAATATACTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

266

Amino Acids

30.26

Weight (kDa)

5.81

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	208 - 258	2.6e-09	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45280 AT3G45280 AT3G45280
fragaria_vesca	FvH4_3g32730 FvH4_3g32730
malus_domestica	MD11G1132900.v1.1
prunus_persica	Prupe.6G098500_v2.0.a1
pyrus_communis	pycom11g10970
rosa_chinensis	RchiOBHm_Chr5g0059791
rosa_laevigata	RLG00000035330
rosa_roxburghii	Rroxscaffold_1G00020770
rosa_rugosa	Rorug05G0325200 Rorug05G0325300 Rorug05G0325400
rosa_samantha	Rh5AG390600 Rh5BG402100 Rh5CG426100 Rh5DG418500
rosa_wichuraiana	Rw5G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
Acc16I	TGCGCA	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	2 cut(s)	30, 129
AccII	CGCG	2 cut(s)	78, 126
AciI	CCGC	6 cut(s)	76, 90, 124, 147, 197, 517
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	3 cut(s)	431, 464, 724
AcuI	CTGAAG	4 cut(s)	321, 393, 501, 576
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	59, 568
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflII	CTTAAG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	458, 574
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	259, 377, 392
AluI	AGCT	3 cut(s)	259, 377, 392
AlwI	GGATC	1 cut(s)	615
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	582
ApeKI	GCWGC	4 cut(s)	170, 259, 377, 380
ApoI	RAATTY	3 cut(s)	431, 464, 724
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	225, 583
AsuHPI	GGTGA	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	225
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BbvI	GCAGC	4 cut(s)	157, 246, 364, 392
BccI	CCATC	4 cut(s)	169, 235, 359, 440
BcgI	CGANNNNNNTGC	4 cut(s)	152, 186, 711, 745
BciT130I	CCWGG	1 cut(s)	326
BfaI	CTAG	2 cut(s)	308, 542
BfmI	CTRYAG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	689
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	5 cut(s)	147, 171, 260, 378, 381
BlsI	GCNGC	5 cut(s)	148, 172, 261, 379, 382
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	225, 583
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	91, 422
Bpu10I	CCTNAGC	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	413, 538
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	333
BseXI	GCAGC	4 cut(s)	157, 246, 364, 392
BseYI	CCCAGC	1 cut(s)	392
Bsh1236I	CGCG	2 cut(s)	78, 126
BshFI	GGCC	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	9, 607
BspACI	CCGC	6 cut(s)	76, 90, 124, 147, 197, 517
BspANI	GGCC	1 cut(s)	584
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	78, 126
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	615
BspTI	CTTAAG	1 cut(s)	689
BsrBI	CCGCTC	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	9, 607
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	689
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	255, 342
BstF5I	GGATG	2 cut(s)	413, 538
BstFNI	CGCG	2 cut(s)	78, 126
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	2 cut(s)	12, 610
BstMBI	GATC	2 cut(s)	9, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 389
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	2 cut(s)	78, 126
BstV1I	GCAGC	4 cut(s)	157, 246, 364, 392
BsuRI	GGCC	1 cut(s)	584
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	413, 538
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	2 cut(s)	225, 583
CseI	GACGC	1 cut(s)	115
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	58, 567
CviAII	CATG	2 cut(s)	587, 596
CviQI	GTAC	2 cut(s)	58, 567
DdeI	CTNAG	2 cut(s)	255, 342
DpnI	GATC	2 cut(s)	11, 609
DpnII	GATC	2 cut(s)	9, 607
DraIII	CACNNNGTG	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	4 cut(s)	321, 393, 501, 576
Eco88I	CYCGRG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	590, 599
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	2 cut(s)	586, 595
FauI	CCCGC	2 cut(s)	97, 131
FblI	GTMKAC	2 cut(s)	30, 129
Fnu4HI	GCNGC	5 cut(s)	147, 171, 260, 378, 381
FokI	GGATG	2 cut(s)	400, 545
Fsp4HI	GCNGC	5 cut(s)	147, 171, 260, 378, 381
FspBI	CTAG	2 cut(s)	308, 542
FspI	TGCGCA	1 cut(s)	263
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	5 cut(s)	147, 171, 260, 378, 381
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	264
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	590, 599
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	2 cut(s)	31, 130
HindII	GTYRAC	2 cut(s)	31, 130
HinfI	GANTC	8 cut(s)	27, 32, 217, 349, 358, 437, 485, 490
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	3 cut(s)	31, 130, 649
Hpy188I	TCNGA	6 cut(s)	156, 225, 276, 445, 556, 664
Hpy188III	TCNNGA	6 cut(s)	24, 67, 353, 362, 499, 542
Hpy8I	GTNNAC	3 cut(s)	31, 130, 649
Hpy99I	CGWCG	7 cut(s)	65, 68, 131, 134, 137, 208, 225
HpyAV	CCTTC	6 cut(s)	115, 160, 496, 530, 551, 781
HpyCH4IV	ACGT	3 cut(s)	63, 206, 316
HpyCH4V	TGCA	4 cut(s)	42, 380, 595, 732
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 389
HpyF3I	CTNAG	2 cut(s)	255, 342
HpySE526I	ACGT	3 cut(s)	63, 206, 316
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	590, 599
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	9, 607
Lsp1109I	GCAGC	4 cut(s)	157, 246, 364, 392
LweI	GCATC	2 cut(s)	91, 422
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	2 cut(s)	308, 542
MaeII	ACGT	3 cut(s)	63, 206, 316
MaeIII	GTNAC	3 cut(s)	113, 320, 655
MalI	GATC	2 cut(s)	11, 609
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	2 cut(s)	9, 607
MboII	GAAGA	3 cut(s)	110, 314, 494
MluCI	AATT	6 cut(s)	431, 464, 494, 624, 724, 765
MlyI	GAGTC	3 cut(s)	26, 36, 499
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	92, 238, 339, 592, 705
Mph1103I	ATGCAT	1 cut(s)	597
MseI	TTAA	2 cut(s)	285, 690
MspCI	CTTAAG	1 cut(s)	689
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	2 cut(s)	78, 126
MwoI	GCNNNNNNNGC	2 cut(s)	167, 389
NdeII	GATC	2 cut(s)	9, 607
NlaIII	CATG	2 cut(s)	590, 599
NlaIV	GGNNCC	1 cut(s)	452
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	113, 320
NsbI	TGCGCA	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 126
PfeI	GAWTC	5 cut(s)	217, 349, 358, 437, 485
PkrI	GCNGC	5 cut(s)	148, 172, 261, 379, 382
PleI	GAGTC	3 cut(s)	26, 35, 498
PpsI	GAGTC	3 cut(s)	26, 35, 498
Ppu21I	YACGTR	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	2 cut(s)	225, 583
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	59, 568
RsaNI	GTAC	2 cut(s)	58, 567
SalI	GTCGAC	2 cut(s)	29, 128
SaqAI	TTAA	2 cut(s)	285, 690
SatI	GCNGC	5 cut(s)	147, 171, 260, 378, 381
Sau3AI	GATC	2 cut(s)	9, 607
Sau96I	GGNCC	2 cut(s)	225, 583
SchI	GAGTC	3 cut(s)	26, 36, 499
ScrFI	CCNGG	1 cut(s)	326
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	2 cut(s)	91, 422
SfcI	CTRYAG	1 cut(s)	378
SgrDI	CGTCGACG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	6 cut(s)	431, 464, 494, 624, 724, 765
SsiI	CCGC	6 cut(s)	76, 90, 124, 147, 197, 517
SspMI	CTAG	2 cut(s)	308, 542
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	3 cut(s)	66, 209, 319
TaqI	TCGA	7 cut(s)	12, 30, 66, 129, 488, 610, 716
TasI	AATT	6 cut(s)	431, 464, 494, 624, 724, 765
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	5 cut(s)	217, 349, 358, 437, 485
Tru1I	TTAA	2 cut(s)	285, 690
Tru9I	TTAA	2 cut(s)	285, 690
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	2 cut(s)	113, 320
TseI	GCWGC	4 cut(s)	170, 259, 377, 380
Tsp45I	GTSAC	2 cut(s)	113, 320
TspDTI	ATGAA	4 cut(s)	429, 525, 539, 549
TspRI	CASTG	1 cut(s)	342
Vha464I	CTTAAG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	3 cut(s)	431, 464, 724
XbaI	TCTAGA	1 cut(s)	541
XmiI	GTMKAC	2 cut(s)	30, 129
XspI	CTAG	2 cut(s)	308, 542
ZraI	GACGTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.