AT3G46160
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
16950955 .. 16952136
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46160.1

Sequence Viewer

Length: 1182 bp
ATGCCGAGATCTATGTCTTCTGATCGATTAGTTCAGTGGGACGACGACTCTAACCGTCCTCACAAGAAGTTGAAGCATTCAACAACGATTTCAGAGACGAGTGTGATAGAGGATGATGCTGATTCGTCTACCCAGATGGGCCATTCGATCAAAACCATTCCAAAAAGCGATCGGTGGGTCGTAACTCGTTATCTTGGAAACTCTTCACGCAGTTCTGTTTACTTAGCCGAGAGCACGATCGAAGGAGAGGAAGACTATCTTCCTGACGAGATGACCATTAAATCTATTGAGATCTCACAAGCGTCACGTCTTATGAACGAAGAAAAGTTTCTATCCCGTCTCCAAAACCCTTTTGTTGTGTCTTTCTACGGCCACGAGGTCACTATAGAGAAGGACGGGAAGGATCCATTACTCGAGAAGATGTATTACAACACGTTACAAGAGTACAGCTCAGGAAGAAACCTAGCGACACACATTGAAAAAAACAGAGGAAAATTACCGGAAGATGATGTGAGGAGTCTCGCTAATGAGATATTGCTTGGTCTCAAGTATATTCATGAAGAGAAGATCATTCATTGTGACATCAAACCAAAGAATATCATACTTCCGTTTGAGAATAACCTATTTGCTCAGATCGCTGGTTTTGGAAAAGCGATAAAGAAATGGTCGGTTGAGTATGGTGAAGGATTAGGTCATAGGATAGGCACGTCACGATTATTGCCCCCGGAGGTTATGATGGACATGGTTTTGGATTATGGTGCTGATGTGTGGGCTTTTGGCTGTACCGTGCTTGAGATGTTGACTGGAGAAAGAGTTTGGAGTGAGTTTGGTAAGCTTGATTGGGAAGGCTGGAAGACCCTCATTGGTGAAAGTGGTAGCGTTCCCTATATTCCTAATTACTTGTCTGATAAGGCAAAGGATTTTCTTGCAAAGTGTTTGGAGAGAGATCCATCTAAGAGGTGGTCAGTTGATAGTTTGCTCGAACATGAGTTCCTTAAATGGATTGACGAAGACGAAGAAGAAGAAATATACGAAGAAGAAGAGGATGACTTTTATGATGGAATAGAAGATGTCGATGAAGAATATGAAGCAAATCTAGAAGCTGAAGCAGCAGTTGAGGAAGAAGAAGCCATTGAAATAGATGAAGAATATCCTAAAGAGGAATCGGAAGATGACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

393

Amino Acids

45.32

Weight (kDa)

4.46

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 63 - 332 4.3e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 63 - 328 3.8e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18530 AT3G45670 AT3G45790 AT3G46140 AT3G46160 AT4G04632

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AclWI GGATC 3 cut(s) 398, 411, 941
AcoI YGGCCR 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 1125
AfaI GTAC 2 cut(s) 446, 784
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 4 cut(s) 73, 81, 479, 1136
AjiI CACGTC 2 cut(s) 308, 708
AloI GAACNNNNNNTCC 2 cut(s) 975, 1007
AluBI AGCT 3 cut(s) 450, 835, 1103
AluI AGCT 3 cut(s) 450, 835, 1103
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 4 cut(s) 89, 344, 524, 548
AlwI GGATC 3 cut(s) 398, 411, 941
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 2 cut(s) 139, 370
ApeKI GCWGC 1 cut(s) 1109
Asp700I GAANNNNTTC 2 cut(s) 202, 327
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 725
AsuHPI GGTGA 2 cut(s) 692, 878
AvaI CYCGRG 1 cut(s) 413
BamHI GGATCC 1 cut(s) 403
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BauI CACGAG 1 cut(s) 374
BbsI GAAGAC 4 cut(s) 9, 258, 860, 1017
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 1121
BccI CCATC 4 cut(s) 130, 730, 958, 1052
BceAI ACGGC 1 cut(s) 385
BcnI CCSGG 1 cut(s) 725
BcoDI GTCTC 4 cut(s) 89, 344, 524, 548
BfaI CTAG 2 cut(s) 464, 1097
BfmI CTRYAG 1 cut(s) 384
BglII AGATCT 2 cut(s) 8, 291
BisI GCNGC 1 cut(s) 1110
BlsI GCNGC 1 cut(s) 1111
Bme1390I CCNGG 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 413
BmgBI CACGTC 2 cut(s) 308, 708
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 725
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 4 cut(s) 9, 258, 860, 1017
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 1 cut(s) 451
BpuEI CTTGAG 2 cut(s) 530, 812
BpuMI CCSGG 1 cut(s) 725
Bsa29I ATCGAT 1 cut(s) 25
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bse1I ACTGG 1 cut(s) 808
BseCI ATCGAT 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 2 cut(s) 118, 1051
BseMII CTCAG 2 cut(s) 465, 644
BseNI ACTGG 1 cut(s) 808
BseRI GAGGAG 1 cut(s) 529
BseXI GCAGC 1 cut(s) 1121
Bsh1285I CGRYCG 2 cut(s) 172, 240
BshFI GGCC 2 cut(s) 141, 372
BshVI ATCGAT 1 cut(s) 25
BsiEI CGRYCG 2 cut(s) 172, 240
BsiHKAI GWGCWC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 2 cut(s) 500, 725
BslFI GGGAC 1 cut(s) 53
BsmAI GTCTC 4 cut(s) 89, 344, 524, 548
BsmBI CGTCTC 2 cut(s) 89, 344
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 2 cut(s) 141, 372
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 236
BspANI GGCC 2 cut(s) 141, 372
BspCNI CTCAG 2 cut(s) 464, 643
BspDI ATCGAT 1 cut(s) 25
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 3 cut(s) 398, 411, 941
BspTNI GGTCTC 1 cut(s) 548
BsrI ACTGG 1 cut(s) 808
BssECI CCNNGG 1 cut(s) 723
BssSI CACGAG 1 cut(s) 374
Bst2BI CACGAG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 56, 787
Bst6I CTCTTC 3 cut(s) 208, 555, 1035
BstDEI CTNAG 4 cut(s) 223, 451, 630, 954
BstF5I GGATG 2 cut(s) 118, 1051
BstMAI GTCTC 4 cut(s) 89, 344, 524, 548
BstMCI CGRYCG 2 cut(s) 172, 240
BstMWI GCNNNNNNNGC 2 cut(s) 635, 1109
BstSCI CCNGG 1 cut(s) 723
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 1121
BstV2I GAAGAC 4 cut(s) 9, 258, 860, 1017
BstX2I RGATCY 4 cut(s) 8, 291, 403, 946
BstYI RGATCY 4 cut(s) 8, 291, 403, 946
Bsu15I ATCGAT 1 cut(s) 25
BsuRI GGCC 2 cut(s) 141, 372
BsuTUI ATCGAT 1 cut(s) 25
BtrI CACGTC 2 cut(s) 308, 708
BtsCI GGATG 2 cut(s) 118, 1051
BtsIMutI CAGTG 1 cut(s) 41
CciI TCATGA 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 25
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 445, 783
CviAII CATG 3 cut(s) 557, 742, 986
CviQI GTAC 2 cut(s) 445, 783
DdeI CTNAG 4 cut(s) 223, 451, 630, 954
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 3 cut(s) 208, 555, 1035
EarI CTCTTC 3 cut(s) 208, 555, 1035
Eco31I GGTCTC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 1125
Eco88I CYCGRG 1 cut(s) 413
Esp3I CGTCTC 2 cut(s) 89, 344
FaeI CATG 3 cut(s) 560, 745, 989
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 556, 741, 985
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 1110
FokI GGATG 2 cut(s) 125, 1058
Fsp4HI GCNGC 1 cut(s) 1110
FspBI CTAG 2 cut(s) 464, 1097
GluI GCNGC 1 cut(s) 1110
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 2 cut(s) 141, 372
HapII CCGG 2 cut(s) 500, 725
HgaI GACGC 1 cut(s) 291
Hin1II CATG 3 cut(s) 560, 745, 989
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 4 cut(s) 47, 122, 517, 1163
HpaII CCGG 2 cut(s) 500, 725
HphI GGTGA 2 cut(s) 692, 878
Hpy166II GTNNAC 3 cut(s) 129, 220, 801
Hpy188I TCNGA 5 cut(s) 22, 94, 633, 907, 1168
Hpy188III TCNNGA 6 cut(s) 263, 415, 453, 557, 711, 1097
Hpy8I GTNNAC 3 cut(s) 129, 220, 801
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 5 cut(s) 236, 385, 394, 677, 839
HpyCH4III ACNGT 2 cut(s) 56, 787
HpyCH4IV ACGT 3 cut(s) 307, 434, 707
HpyCH4V TGCA 1 cut(s) 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 635, 1109
HpyF3I CTNAG 4 cut(s) 223, 451, 630, 954
HpySE526I ACGT 3 cut(s) 307, 434, 707
Hsp92II CATG 3 cut(s) 560, 745, 989
LpnPI CCDG 8 cut(s) 146, 276, 438, 513, 624, 738, 789, 835
Lsp1109I GCAGC 1 cut(s) 1121
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 464, 1097
MaeII ACGT 3 cut(s) 307, 434, 707
MaeIII GTNAC 6 cut(s) 181, 303, 379, 435, 578, 708
MflI RGATCY 4 cut(s) 8, 291, 403, 946
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 2 cut(s) 494, 895
MlyI GAGTC 2 cut(s) 41, 526
MroXI GAANNNNTTC 2 cut(s) 202, 327
MseI TTAA 2 cut(s) 279, 996
MspI CCGG 2 cut(s) 500, 725
MspR9I CCNGG 1 cut(s) 725
Mva1269I GAATGC 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 635, 1109
NciI CCSGG 1 cut(s) 725
NlaIII CATG 3 cut(s) 560, 745, 989
NlaIV GGNNCC 1 cut(s) 405
NmeAIII GCCGAG 2 cut(s) 30, 253
NmuCI GTSAC 4 cut(s) 303, 379, 578, 708
PaeR7I CTCGAG 1 cut(s) 413
PagI TCATGA 1 cut(s) 556
PctI GAATGC 1 cut(s) 76
PdmI GAANNNNTTC 2 cut(s) 202, 327
PfeI GAWTC 2 cut(s) 122, 1163
PkrI GCNGC 1 cut(s) 1111
Ple19I CGATCG 2 cut(s) 172, 240
PleI GAGTC 2 cut(s) 41, 525
PpsI GAGTC 2 cut(s) 41, 525
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 4 cut(s) 8, 291, 403, 946
PvuI CGATCG 2 cut(s) 172, 240
RsaI GTAC 2 cut(s) 446, 784
RsaNI GTAC 2 cut(s) 445, 783
SaqAI TTAA 2 cut(s) 279, 996
SatI GCNGC 1 cut(s) 1110
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 2 cut(s) 41, 526
ScrFI CCNGG 1 cut(s) 725
SduI GDGCHC 1 cut(s) 236
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 413
SlaI CTCGAG 1 cut(s) 413
SmlI CTYRAG 3 cut(s) 413, 545, 791
SmoI CTYRAG 3 cut(s) 413, 545, 791
Sse9I AATT 2 cut(s) 494, 895
SspMI CTAG 2 cut(s) 464, 1097
StyD4I CCNGG 1 cut(s) 723
TaaI ACNGT 2 cut(s) 56, 787
TaiI ACGT 3 cut(s) 310, 437, 710
TaqI TCGA 6 cut(s) 25, 146, 240, 414, 981, 1074
TasI AATT 2 cut(s) 494, 895
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 2 cut(s) 122, 1163
Tru1I TTAA 2 cut(s) 279, 996
Tru9I TTAA 2 cut(s) 279, 996
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 4 cut(s) 303, 379, 578, 708
TseI GCWGC 1 cut(s) 1109
Tsp45I GTSAC 4 cut(s) 303, 379, 578, 708
TspDTI ATGAA 7 cut(s) 329, 545, 563, 573, 1092, 1101, 1158
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 1096
XcmI CCANNNNNNNNNTGG 1 cut(s) 957
XhoI CTCGAG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 2 cut(s) 202, 327
XspI CTAG 2 cut(s) 464, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.