AT3G47070

Thylakoid soluble phosphoprotein TSP9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015352
Physical Location & Seq
Reverse (-)
17336592 .. 17337733
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47070.1

Sequence Viewer

Length: 303 bp
ATGGTTTCTTCGCTTCTTATGTCATTTGCTCCGGCCACCGTGAGGGTTTACGCCACAAGCACAAAGGGAGGTTCAGGCGGCCCAAAGGAGGAGAAGAATCCCATCGACTTTGTTCTTGGGTTTATGACAAAACAAGATCAGTTCTATGAGACTAATCCACTTCTAAAGAAGGTGGATGAGAAAGAAGGCACCACCACCGGAGGCCGAGGAACCGTTCGCGGTGGTAAAAACTCAGCTCCGACGCCTGTGCCGAAGAAGAGCGAGGGTGGATTTGGTGGCTTAGGAAGCCTCTTCAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSP9

Protein Analysis

100

Amino Acids

10.53

Weight (kDa)

9.74

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSP9 PF11493 21 - 100 7e-33 Thylakoid soluble phosphoprotein TSP9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47070
fragaria_vesca FvH4_3g38260 FvH4_3g38260
malus_domestica MD03G1073700.v1.1 MD11G1079700.v1.1
prunus_persica Prupe.6G060300_v2.0.a1
pyrus_communis pycom03g05960 pycom11g06720
rosa_chinensis RchiOBHm_Chr5g0068741
rosa_multiflora Rmu_sc0000376.1_g000029
rosa_rugosa Rorug05G0392800
rosa_samantha Rh5AG450400 Rh5BG468800 Rh5CG491000 Rh5DG482300
rosa_wichuraiana Rw5G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 78, 219
AcoI YGGCCR 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 42, 88
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 143
AoxI GGCC 3 cut(s) 33, 79, 202
AspS9I GGNCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 188
BccI CCATC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 190, 211
Bpu10I CCTNAGC 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 88
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 42, 88
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 35, 81, 204
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 32, 198
BslI CCNNNNNNNGG 2 cut(s) 42, 88
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 3 cut(s) 35, 81, 204
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 2 cut(s) 78, 219
BspANI GGCC 3 cut(s) 35, 81, 204
BspCNI CTCAG 1 cut(s) 245
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 190, 211
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 40, 214
Bst6I CTCTTC 2 cut(s) 251, 296
BstACI GRCGYC 1 cut(s) 242
BstDEI CTNAG 2 cut(s) 232, 280
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstUI CGCG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 35, 81, 204
BtsCI GGATG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 1 cut(s) 250
CviJI RGCY 6 cut(s) 35, 81, 204, 236, 279, 288
CviKI_1 RGCY 6 cut(s) 35, 81, 204, 236, 279, 288
DdeI CTNAG 2 cut(s) 232, 280
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 251, 296
EarI CTCTTC 2 cut(s) 251, 296
FaiI YATR 3 cut(s) 20, 125, 147
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 3 cut(s) 35, 81, 204
HapII CCGG 2 cut(s) 32, 198
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 242
HinfI GANTC 1 cut(s) 97
HpaII CCGG 2 cut(s) 32, 198
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 163, 179
HpyCH4III ACNGT 2 cut(s) 40, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 2 cut(s) 232, 280
Hsp92I GRCGYC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 34, 241
LpnPI CCDG 4 cut(s) 45, 60, 211, 258
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 4 cut(s) 106, 265, 268, 283
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 7 cut(s) 36, 62, 82, 194, 200, 256, 299
MspI CCGG 2 cut(s) 32, 198
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 190, 211
NmeAIII GCCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 190, 211
PspPI GGNCC 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 251
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 80
SetI ASST 3 cut(s) 73, 174, 238
SsiI CCGC 2 cut(s) 78, 219
TaaI ACNGT 2 cut(s) 40, 214
TaqI TCGA 1 cut(s) 105
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.