MD03G1073700.v1.1

Thylakoid soluble phosphoprotein TSP9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015352
Physical Location & Seq
Forward (+)
5998706 .. 5998984
279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1073700.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGCTTCCTTGACAATGGTCTTTCCCCCAGTGGTGACCGGCTGGGCAACTGGGCAAGTGTACGCTGCAACGGCGGCCAAGGGAGGAAGCAAAGAAGAGAAGGGTCTGCTTGATTGGATCCTTGGAGGGCTAGCAAAGGAGGACCAGCTGCTTGAGGTTGATCCAATCCTGAAGAAGGTTGAGGACAAGAATGGTACCGTCAGCGGCCGCAAGGGCACTGTAGTTGTGCCGCCGAAGAAGCTGGGTGGCTTCGGAGGCCTTTTTGCCAAGAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSP9

Protein Analysis

93

Amino Acids

9.61

Weight (kDa)

9.26

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSP9 PF11493 24 - 90 2.1e-22 Thylakoid soluble phosphoprotein TSP9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47070
fragaria_vesca FvH4_3g38260 FvH4_3g38260
malus_domestica MD03G1073700.v1.1 MD11G1079700.v1.1
prunus_persica Prupe.6G060300_v2.0.a1
pyrus_communis pycom03g05960 pycom11g06720
rosa_chinensis RchiOBHm_Chr5g0068741
rosa_multiflora Rmu_sc0000376.1_g000029
rosa_rugosa Rorug05G0392800
rosa_samantha Rh5AG450400 Rh5BG468800 Rh5CG491000 Rh5DG482300
rosa_wichuraiana Rw5G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 194
AciI CCGC 4 cut(s) 74, 204, 208, 230
AclWI GGATC 3 cut(s) 112, 125, 155
AcoI YGGCCR 2 cut(s) 75, 205
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 2 cut(s) 62, 196
AfiI CCNNNNNNNGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 148, 241
AluI AGCT 2 cut(s) 148, 241
AlwI GGATC 3 cut(s) 112, 125, 155
AoxI GGCC 3 cut(s) 75, 205, 256
ApeKI GCWGC 2 cut(s) 65, 148
Asp718I GGTACC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 218
BamHI GGATCC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 52, 135
BceAI ACGGC 1 cut(s) 87
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 213
BisI GCNGC 6 cut(s) 66, 75, 149, 205, 208, 230
BlsI GCNGC 6 cut(s) 67, 76, 150, 206, 209, 231
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 119, 196
BmrI ACTGGG 2 cut(s) 23, 60
BmtI GCTAGC 1 cut(s) 134
BmuI ACTGGG 2 cut(s) 23, 60
BoxI GACNNNNGTC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 78, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 29, 55
BseDI CCNNGG 2 cut(s) 78, 121
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 2 cut(s) 29, 55
BseSI GKGCMC 1 cut(s) 218
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 2 cut(s) 52, 135
BseYI CCCAGC 2 cut(s) 42, 241
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 3 cut(s) 77, 207, 258
BshNI GGYRCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 3 cut(s) 77, 207, 258
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 2 cut(s) 117, 160
BspACI CCGC 4 cut(s) 74, 204, 208, 230
BspANI GGCC 3 cut(s) 77, 207, 258
BspLI GGNNCC 2 cut(s) 119, 196
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 3 cut(s) 112, 125, 155
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 2 cut(s) 29, 55
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 78, 121
BssMI GATC 2 cut(s) 117, 160
BssT1I CCWWGG 2 cut(s) 78, 121
Bst4CI ACNGT 2 cut(s) 199, 220
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 173
BstKTI GATC 2 cut(s) 120, 163
BstMBI GATC 2 cut(s) 117, 160
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 5 cut(s) 71, 74, 213, 238, 255
BstPAI GACNNNNGTC 1 cut(s) 17
BstPI GGTNACC 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 52, 135
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 3 cut(s) 77, 207, 258
BtsIMutI CAGTG 2 cut(s) 36, 216
Cac8I GCNNGC 1 cut(s) 132
CciNI GCGGCCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 61, 195
CviJI RGCY 9 cut(s) 5, 42, 77, 130, 148, 207, 241, 249, 258
CviKI_1 RGCY 9 cut(s) 5, 42, 77, 130, 148, 207, 241, 249, 258
CviQI GTAC 2 cut(s) 61, 195
DpnI GATC 2 cut(s) 119, 162
DpnII GATC 2 cut(s) 117, 160
EaeI YGGCCR 2 cut(s) 75, 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 78, 121
Eco147I AGGCCT 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 78, 121
ErhI CCWWGG 2 cut(s) 78, 121
Fnu4HI GCNGC 6 cut(s) 66, 75, 149, 205, 208, 230
Fsp4HI GCNGC 6 cut(s) 66, 75, 149, 205, 208, 230
FspBI CTAG 1 cut(s) 131
GluI GCNGC 6 cut(s) 66, 75, 149, 205, 208, 230
GsaI CCCAGC 2 cut(s) 46, 245
HaeIII GGCC 3 cut(s) 77, 207, 258
HapII CCGG 1 cut(s) 39
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 94, 169, 265
HpyCH4III ACNGT 2 cut(s) 199, 220
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 74, 213, 238, 255
KpnI GGTACC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 117, 160
LpnPI CCDG 7 cut(s) 28, 36, 42, 52, 158, 182, 227
Lsp1109I GCAGC 2 cut(s) 52, 135
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 119, 162
MboI GATC 2 cut(s) 117, 160
MboII GAAGA 3 cut(s) 107, 184, 247
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 218
MnlI CCTC 6 cut(s) 77, 119, 133, 148, 175, 248
MspA1I CMGCKG 2 cut(s) 148, 204
MspI CCGG 1 cut(s) 39
MwoI GCNNNNNNNGC 5 cut(s) 71, 74, 213, 238, 255
NdeII GATC 2 cut(s) 117, 160
NheI GCTAGC 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 119, 196
NmuCI GTSAC 1 cut(s) 34
NotI GCGGCCGC 1 cut(s) 205
PceI AGGCCT 1 cut(s) 258
PkrI GCNGC 6 cut(s) 67, 76, 150, 206, 209, 231
PshAI GACNNNNGTC 1 cut(s) 17
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 2 cut(s) 42, 241
PspN4I GGNNCC 2 cut(s) 119, 196
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 117
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 2 cut(s) 62, 196
RsaNI GTAC 2 cut(s) 61, 195
SatI GCNGC 6 cut(s) 66, 75, 149, 205, 208, 230
Sau3AI GATC 2 cut(s) 117, 160
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 218
SetI ASST 4 cut(s) 150, 159, 180, 243
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SseBI AGGCCT 1 cut(s) 258
SsiI CCGC 4 cut(s) 74, 204, 208, 230
SspMI CTAG 1 cut(s) 131
StuI AGGCCT 1 cut(s) 258
StyI CCWWGG 2 cut(s) 78, 121
TaaI ACNGT 2 cut(s) 199, 220
TauI GCSGC 4 cut(s) 77, 207, 210, 232
TscAI CASTG 2 cut(s) 36, 223
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 2 cut(s) 65, 148
Tsp45I GTSAC 1 cut(s) 34
TspRI CASTG 2 cut(s) 36, 223
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 1 cut(s) 173
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.