Prupe.6G060300_v2.0.a1

Thylakoid soluble phosphoprotein TSP9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015352
Physical Location & Seq
Forward (+)
4185526 .. 4186229
704 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G060300.1

Sequence Viewer

Length: 282 bp
ATGGCCTCCCTCACAATGGTTTTTGCTCCGGTGCCAACCGGTAGAGCAAGTAGTCGGGTGTACGCGGCAACCGCGGCCAAGGGAGGAAGCAAAGAGGAGAAGGGTCTGCTTGATTGGATTCTTGGAGGGCTAGCAAAGGAGGACCAGCTGCTTGAGACTGATCCAATCCTCAAGAAGGTTGAGGATAAGAATGGTGCCACTAATGGTGGCCGCAAGGGCACAGTGGAGATACCCCAGAAGAAGAAGGGCGGGTTTGGAGGCCTCTTTGTCAAGAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSP9

Protein Analysis

94

Amino Acids

9.78

Weight (kDa)

9.6

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47070
fragaria_vesca FvH4_3g38260 FvH4_3g38260
malus_domestica MD03G1073700.v1.1 MD11G1079700.v1.1
prunus_persica Prupe.6G060300_v2.0.a1
pyrus_communis pycom03g05960 pycom11g06720
rosa_chinensis RchiOBHm_Chr5g0068741
rosa_multiflora Rmu_sc0000376.1_g000029
rosa_rugosa Rorug05G0392800
rosa_samantha Rh5AG450400 Rh5BG468800 Rh5CG491000 Rh5DG482300
rosa_wichuraiana Rw5G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 31, 194
AccII CGCG 2 cut(s) 65, 74
AciI CCGC 5 cut(s) 65, 72, 74, 211, 249
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 2 cut(s) 75, 208
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 16, 175
AgeI ACCGGT 1 cut(s) 38
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 155
AoxI GGCC 4 cut(s) 3, 75, 208, 259
ApeKI GCWGC 1 cut(s) 148
AsiGI ACCGGT 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 142
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 221
BanI GGYRCC 2 cut(s) 31, 194
BbvI GCAGC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 131
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 4 cut(s) 66, 75, 149, 211
BlsI GCNGC 4 cut(s) 67, 76, 150, 212
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 33, 196
BmtI GCTAGC 1 cut(s) 134
BpuEI CTTGAG 2 cut(s) 155, 173
BsaJI CCNNGG 2 cut(s) 72, 78
BsaWI WCCGGW 2 cut(s) 28, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 175
Bse118I RCCGGY 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 72, 78
BseLI CCNNNNNNNGG 2 cut(s) 16, 175
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 1 cut(s) 135
Bsh1236I CGCG 2 cut(s) 65, 74
BshFI GGCC 4 cut(s) 5, 77, 210, 261
BshNI GGYRCC 2 cut(s) 31, 194
BshTI ACCGGT 1 cut(s) 38
BsiSI CCGG 2 cut(s) 29, 39
BslI CCNNNNNNNGG 2 cut(s) 16, 175
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 4 cut(s) 5, 77, 210, 261
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 5 cut(s) 65, 72, 74, 211, 249
BspANI GGCC 4 cut(s) 5, 77, 210, 261
BspFNI CGCG 2 cut(s) 65, 74
BspLI GGNNCC 2 cut(s) 33, 196
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 155
BspT107I GGYRCC 2 cut(s) 31, 194
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 72, 78
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 72
BstENI CCTNNNNNAGG 1 cut(s) 173
BstFNI CGCG 2 cut(s) 65, 74
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 71, 74, 216
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 2 cut(s) 65, 74
BstV1I GCAGC 1 cut(s) 135
BsuRI GGCC 4 cut(s) 5, 77, 210, 261
BtgI CCRYGG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 142
Cfr42I CCGCGG 1 cut(s) 75
Csp6I GTAC 1 cut(s) 61
CspAI ACCGGT 1 cut(s) 38
CviJI RGCY 6 cut(s) 5, 77, 130, 148, 210, 261
CviKI_1 RGCY 6 cut(s) 5, 77, 130, 148, 210, 261
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 75, 208
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 4 cut(s) 66, 75, 149, 211
Fsp4HI GCNGC 4 cut(s) 66, 75, 149, 211
FspBI CTAG 1 cut(s) 131
GluI GCNGC 4 cut(s) 66, 75, 149, 211
HaeIII GGCC 4 cut(s) 5, 77, 210, 261
HapII CCGG 2 cut(s) 29, 39
HinfI GANTC 1 cut(s) 118
HpaII CCGG 2 cut(s) 29, 39
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 172, 271
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 4 cut(s) 94, 169, 238, 268
HpyCH4III ACNGT 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 74, 216
KspI CCGCGG 1 cut(s) 75
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 4 cut(s) 42, 52, 158, 248
Lsp1109I GCAGC 1 cut(s) 135
MaeI CTAG 1 cut(s) 131
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 250, 253
MhlI GDGCHC 1 cut(s) 221
MspA1I CMGCKG 2 cut(s) 74, 148
MspI CCGG 2 cut(s) 29, 39
MvnI CGCG 2 cut(s) 65, 74
MwoI GCNNNNNNNGC 3 cut(s) 71, 74, 216
NdeII GATC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 33, 196
PceI AGGCCT 1 cut(s) 261
PfeI GAWTC 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 38
PkrI GCNGC 4 cut(s) 67, 76, 150, 212
PspN4I GGNNCC 2 cut(s) 33, 196
PspPI GGNCC 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacII CCGCGG 1 cut(s) 75
SatI GCNGC 4 cut(s) 66, 75, 149, 211
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 221
SetI ASST 2 cut(s) 150, 180
Sfr303I CCGCGG 1 cut(s) 75
SgrBI CCGCGG 1 cut(s) 75
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 152, 170
SmoI CTYRAG 2 cut(s) 152, 170
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 5 cut(s) 65, 72, 74, 211, 249
SspMI CTAG 1 cut(s) 131
StuI AGGCCT 1 cut(s) 261
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 223
TauI GCSGC 3 cut(s) 68, 77, 213
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 228
TseI GCWGC 1 cut(s) 148
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 1 cut(s) 173
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.