Rh5AG450400

Thylakoid soluble phosphoprotein TSP9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015352
Physical Location & Seq
Reverse (-)
77248041 .. 77248793
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG450400.1

Sequence Viewer

Length: 270 bp
ATGGCCTCCTTTACAATGGTCTTTGCTCCCATGGTAACCACCAGAGTAAACACCCGAGTGTACGCCGCAACCGCAGCCAAGGGCGCAGGAGGAAGCAAAGAAGAGAAGGGTTTTATTGGTTGGCTAGGTGGAGTTATTGCAAAGGAGGACCAGCTGCTAGAGGTTGATCCCATACTCAAGAAGGTTGAGGGTAAGAGTGATGGAACCACCAGCGGCCGCAAGAACACGGTGGTGGAGCCGCCGAAGAAGAAGGGTGGGTCAGTCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSP9

Protein Analysis

89

Amino Acids

9.39

Weight (kDa)

9.65

Isoelectric Point (pI)

20.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSP9 PF11493 25 - 86 2.2e-16 Thylakoid soluble phosphoprotein TSP9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47070
fragaria_vesca FvH4_3g38260 FvH4_3g38260
malus_domestica MD03G1073700.v1.1 MD11G1079700.v1.1
prunus_persica Prupe.6G060300_v2.0.a1
pyrus_communis pycom03g05960 pycom11g06720
rosa_chinensis RchiOBHm_Chr5g0068741
rosa_multiflora Rmu_sc0000376.1_g000029
rosa_rugosa Rorug05G0392800
rosa_samantha Rh5AG450400 Rh5BG468800 Rh5CG491000 Rh5DG482300
rosa_wichuraiana Rw5G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 66, 72, 213, 217, 239
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 214
AfaI GTAC 1 cut(s) 62
AleI CACNNNNGTG 2 cut(s) 56, 230
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 54
AoxI GGCC 2 cut(s) 3, 214
ApeKI GCWGC 2 cut(s) 74, 154
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 54
AvaII GGWCC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 86, 141
BccI CCATC 1 cut(s) 194
BfaI CTAG 2 cut(s) 125, 158
BisI GCNGC 6 cut(s) 66, 75, 155, 214, 217, 239
BlsI GCNGC 6 cut(s) 67, 76, 156, 215, 218, 240
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 205, 237
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 30, 78
BseDI CCNNGG 2 cut(s) 30, 78
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 86, 141
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 5, 216
BsiEI CGRYCG 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 54
BsnI GGCC 2 cut(s) 5, 216
BsoBI CYCGRG 1 cut(s) 54
Bsp143I GATC 1 cut(s) 166
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 5 cut(s) 66, 72, 213, 217, 239
BspANI GGCC 2 cut(s) 5, 216
BspLI GGNNCC 2 cut(s) 205, 237
BspPI GGATC 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 30, 78
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 2 cut(s) 30, 78
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 34
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 3 cut(s) 71, 74, 83
BstPI GGTNACC 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 86, 141
BstZI CGGCCG 1 cut(s) 214
BsuRI GGCC 2 cut(s) 5, 216
BtgI CCRYGG 1 cut(s) 30
CciNI GCGGCCGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 5, 77, 124, 154, 216, 238
CviKI_1 RGCY 6 cut(s) 5, 77, 124, 154, 216, 238
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 214
EagI CGGCCG 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EclXI CGGCCG 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 30, 78
Eco47I GGWCC 1 cut(s) 148
Eco52I CGGCCG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 54
Eco91I GGTNACC 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 30, 78
ErhI CCWWGG 2 cut(s) 30, 78
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 173
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 6 cut(s) 66, 75, 155, 214, 217, 239
Fsp4HI GCNGC 6 cut(s) 66, 75, 155, 214, 217, 239
FspBI CTAG 2 cut(s) 125, 158
GlaI GCGC 1 cut(s) 85
GluI GCNGC 6 cut(s) 66, 75, 155, 214, 217, 239
HaeIII GGCC 2 cut(s) 5, 216
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 49, 61
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 2 cut(s) 49, 61
HpyAV CCTTC 3 cut(s) 100, 175, 244
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 74, 83
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 31, 235
LpnPI CCDG 4 cut(s) 55, 72, 164, 223
Lsp1109I GCAGC 2 cut(s) 86, 141
MaeI CTAG 2 cut(s) 125, 158
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 113, 256, 259
MnlI CCTC 5 cut(s) 16, 83, 139, 154, 181
MseI TTAA 1 cut(s) 268
MslI CAYNNNNRTG 2 cut(s) 56, 230
MspA1I CMGCKG 2 cut(s) 154, 213
MwoI GCNNNNNNNGC 3 cut(s) 71, 74, 83
NcoI CCATGG 1 cut(s) 30
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 205, 237
NotI GCGGCCGC 1 cut(s) 214
OliI CACNNNNGTG 2 cut(s) 56, 230
PkrI GCNGC 6 cut(s) 67, 76, 156, 215, 218, 240
PspEI GGTNACC 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 205, 237
PspPI GGNCC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 2 cut(s) 56, 230
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 6 cut(s) 66, 75, 155, 214, 217, 239
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 148
SetI ASST 4 cut(s) 130, 156, 165, 186
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 2 cut(s) 56, 230
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SsiI CCGC 5 cut(s) 66, 72, 213, 217, 239
SspMI CTAG 2 cut(s) 125, 158
StyI CCWWGG 2 cut(s) 30, 78
TaaI ACNGT 1 cut(s) 229
TauI GCSGC 4 cut(s) 68, 216, 219, 241
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TseI GCWGC 2 cut(s) 74, 154
VpaK11BI GGWCC 1 cut(s) 148
XspI CTAG 2 cut(s) 125, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.