pycom03g05960

Thylakoid soluble phosphoprotein TSP9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015352
Physical Location & Seq
Forward (+)
4719013 .. 4719294
282 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05960.1

Sequence Viewer

Length: 282 bp
ATGGCTTCCTTGACAATGGTCTTTCCTCCAGTGGTGACCAGCTGGGCAACCGGCCAAGTGTACGCTGCAACAGAGGCCAAGGGAGGAAGCAAAGAAGAGAAGGGTCTGCTTGATTGGATCCTTGGAGGGCTAGCAAAGGAGGACCAGCTGCTTGAGGTTGACCCAATCCTGAAGAAGGTTGAGGACAAGAATGGTAGCGTCAGCAGCCGCAAGGGCACTGTGGTTGTGCCGCCGAAGAAGAAGCAGGGCGGCTTCGGAGGCCTTTTTGCCAAGAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSP9

Protein Analysis

94

Amino Acids

9.86

Weight (kDa)

9.22

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSP9 PF11493 24 - 91 1.5e-23 Thylakoid soluble phosphoprotein TSP9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47070
fragaria_vesca FvH4_3g38260 FvH4_3g38260
malus_domestica MD03G1073700.v1.1 MD11G1079700.v1.1
prunus_persica Prupe.6G060300_v2.0.a1
pyrus_communis pycom03g05960 pycom11g06720
rosa_chinensis RchiOBHm_Chr5g0068741
rosa_multiflora Rmu_sc0000376.1_g000029
rosa_rugosa Rorug05G0392800
rosa_samantha Rh5AG450400 Rh5BG468800 Rh5CG491000 Rh5DG482300
rosa_wichuraiana Rw5G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 208, 230, 249
AclWI GGATC 2 cut(s) 112, 125
AcoI YGGCCR 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 42, 148
AluI AGCT 2 cut(s) 42, 148
AlwI GGATC 2 cut(s) 112, 125
AoxI GGCC 3 cut(s) 52, 75, 259
ApeKI GCWGC 3 cut(s) 65, 148, 204
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 218
BamHI GGATCC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 52, 135, 216
BfaI CTAG 1 cut(s) 131
BglI GCCNNNNNGGC 1 cut(s) 213
BisI GCNGC 6 cut(s) 66, 149, 205, 208, 230, 250
BlsI GCNGC 6 cut(s) 67, 150, 206, 209, 231, 251
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 119
BmtI GCTAGC 1 cut(s) 134
BoxI GACNNNNGTC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 78, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 78, 121
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 3 cut(s) 52, 135, 216
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 3 cut(s) 54, 77, 261
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 3 cut(s) 54, 77, 261
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 3 cut(s) 208, 230, 249
BspANI GGCC 3 cut(s) 54, 77, 261
BspLI GGNNCC 1 cut(s) 119
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 2 cut(s) 112, 125
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 78, 121
BssMI GATC 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 78, 121
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 173
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 4 cut(s) 74, 204, 213, 258
BstPAI GACNNNNGTC 1 cut(s) 17
BstPI GGTNACC 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 218
BstV1I GCAGC 3 cut(s) 52, 135, 216
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 3 cut(s) 54, 77, 261
BtsIMutI CAGTG 2 cut(s) 36, 216
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 61
CviJI RGCY 9 cut(s) 5, 42, 54, 77, 130, 148, 207, 252, 261
CviKI_1 RGCY 9 cut(s) 5, 42, 54, 77, 130, 148, 207, 252, 261
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 78, 121
Eco147I AGGCCT 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 78, 121
ErhI CCWWGG 2 cut(s) 78, 121
Fnu4HI GCNGC 6 cut(s) 66, 149, 205, 208, 230, 250
Fsp4HI GCNGC 6 cut(s) 66, 149, 205, 208, 230, 250
FspBI CTAG 1 cut(s) 131
GluI GCNGC 6 cut(s) 66, 149, 205, 208, 230, 250
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 12
HaeIII GGCC 3 cut(s) 54, 77, 261
HapII CCGG 1 cut(s) 51
HgaI GACGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 61, 160
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 61, 160
HpyAV CCTTC 3 cut(s) 94, 169, 268
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 204, 213, 258
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 7 cut(s) 28, 42, 52, 64, 158, 182, 230
Lsp1109I GCAGC 3 cut(s) 52, 135, 216
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 4 cut(s) 107, 184, 247, 250
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 218
MnlI CCTC 8 cut(s) 36, 67, 77, 119, 133, 148, 175, 251
MspA1I CMGCKG 2 cut(s) 42, 148
MspI CCGG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 74, 204, 213, 258
NdeII GATC 1 cut(s) 117
NheI GCTAGC 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 34
PceI AGGCCT 1 cut(s) 261
PkrI GCNGC 6 cut(s) 67, 150, 206, 209, 231, 251
PshAI GACNNNNGTC 1 cut(s) 17
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 117
PvuII CAGCTG 2 cut(s) 42, 148
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SatI GCNGC 6 cut(s) 66, 149, 205, 208, 230, 250
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 218
SetI ASST 4 cut(s) 44, 150, 159, 180
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 3 cut(s) 208, 230, 249
SspMI CTAG 1 cut(s) 131
StuI AGGCCT 1 cut(s) 261
StyI CCWWGG 2 cut(s) 78, 121
TaaI ACNGT 1 cut(s) 220
TauI GCSGC 3 cut(s) 210, 232, 252
TscAI CASTG 2 cut(s) 36, 223
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 3 cut(s) 65, 148, 204
Tsp45I GTSAC 1 cut(s) 34
TspRI CASTG 2 cut(s) 36, 223
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 1 cut(s) 173
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.