AT3G48170

Aldehyde dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
17785854 .. 17790026
4173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48170.1

Sequence Viewer

Length: 1512 bp
ATGGCGATTACGGTGCCGAGACGGCAACTCTTCATCGGCGGTCAATGGACTGAGCCCGTTCTCCGTAAAACTCTCCCTGTTGTCAATCCCGCCACCGAAGACATCATCGGTTATATTCCAGCTGCAACTTCTGAAGATGTGGAGCTTGCTGTGGAAGCTGCTAGGAAAGCATTTACTAGGAACAACGGAAAGGATTGGGCTAGAGCAACTGGTGCTGTTCGTGCCAAATACTTGCGCGCTATTGCAGCTAAGGTAATAGAGAGGAAGTCTGAACTAGCTAATCTTGAGGCTATTGATTGCGGTAAACCTCTAGATGAAGCAGCATGGGACATGGATGATGTTGCTGGATGTTTTGAATATTATGCTGACCTAGCTGAAGGCTTGGATGCAAAGCAGAAGACTCCTCTTTCTCTTCCGATGGATACTTTTAAGGGTTATATTCTCAAGGAACCCATTGGCGTAGTTGGCATGATTACTCCATGGAACTATCCGTTATTGATGGCTGTCTGGAAAGTCGCTCCTTCACTTGCTGCTGGGTGCACGGCTATACTGAAACCTTCAGAGTTGGCCTCCCTGACATGTTTGGAGCTCGCTGATATTTGCCGCGAGGTGGGTCTACCACCTGGTGTTCTTAATATTCTGACTGGTTTAGGAACTGAAGCAGGTGCTCCACTGGCATCGCATCCACATGTTGACAAGATTGTATTCACTGGAAGCACAACAACTGGAAGCAGCATTATGACTTCCGCTGCCAAATTGGTGAAACCAGTTTCCTTGGAGCTTGGGGGTAAAAGCCCTATCATTGTCTTTGATGATGTCGATATTGATAAAGCTGTGGAATGGACTATGTTTGGTTGTTTCTGGACGAATGGGCAGATTTGTAGTGCCACATCTCGACTTCTTGTGCATGAAAGGATTGCTGACGAGTTTTTGGACAAGCTGGTAAAGTGGACCAAGAACATTAAGATTTCAGATCCTTTTGAAGAAGGCTGTAGGCTTGGTCCTGTTGTCAGTAAAGGACAGTACGAGAGAGTTCTAAAGTTTGTCTCAAACGCTAGGAATGAAGGTGCAACTGTTCTTTGTGGAGGAGTTCGTCCTGAGCATTTAAAGAAGGGATACTTTGTTGAACCTGCGATTGTTTCAAATGTGACTACTTCAATGGAAATCTGGAGAGAGGAAGTCTTTGGTCCTGCTCTGTGTGTGAAAACATTCTCCACCGAGGATGAGGCAATTCAGCTTGCAAATGACTCTCAATATGGATTAGCAGGCGCAGTATTATCAAATGATCTGGAGCGGTGTGATCGTGTTAGTAAGGCTTTCCAGGCGGGAATAGTGTGGGTCAACTGCTCTCAGCCATGCTTCTGCCAAGCTCCATGGGGTGGAACCAAACGCAGTGGATTTGGCCGTGAATTGGGAGAATGGGGACTTGAGAACTACTTGAGTGTGAAGCAGGTGACTCAGTATATCTCTGATGAACCATGGGGATGGTACAAACCTCCTTCCAAGCTCTGA

Protein Analysis

503

Amino Acids

54.92

Weight (kDa)

5.39

Isoelectric Point (pI)

26.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 16 - 485 4.3e-171 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 653, 1441
Acc36I ACCTGC 3 cut(s) 653, 1138, 1441
AccB1I GGYRCC 1 cut(s) 13
AccB7I CCANNNNNTGG 1 cut(s) 1379
AccBSI CCGCTC 1 cut(s) 1294
AccI GTMKAC 1 cut(s) 616
AccII CGCG 2 cut(s) 237, 606
AciI CCGC 7 cut(s) 39, 90, 300, 604, 747, 1294, 1325
AclWI GGATC 1 cut(s) 968
AcoI YGGCCR 1 cut(s) 1402
AcuI CTGAAG 4 cut(s) 153, 396, 543, 678
AdeI CACNNNGTG 1 cut(s) 626
AfaI GTAC 2 cut(s) 1025, 1490
AfiI CCNNNNNNNGG 3 cut(s) 610, 1379, 1411
AflIII ACRYGT 2 cut(s) 578, 688
AgsI TTSAA 5 cut(s) 356, 983, 1127, 1143, 1158
AjnI CCWGG 2 cut(s) 622, 1320
Alw21I GWGCWC 3 cut(s) 542, 591, 670
Alw26I GTCTC 2 cut(s) 13, 1051
Alw44I GTGCAC 1 cut(s) 538
AlwI GGATC 1 cut(s) 968
AoxI GGCC 2 cut(s) 567, 1402
ApaLI GTGCAC 1 cut(s) 538
ApeKI GCWGC 7 cut(s) 122, 158, 245, 320, 530, 732, 749
Asp700I GAANNNNTTC 1 cut(s) 1208
AspLEI GCGC 3 cut(s) 237, 239, 1271
AspS9I GGNCC 3 cut(s) 951, 1001, 1187
AsuHPI GGTGA 2 cut(s) 772, 1465
AvaII GGWCC 3 cut(s) 951, 1001, 1187
BaeGI GKGCMC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 2 cut(s) 57, 591
BbsI GAAGAC 2 cut(s) 105, 404
Bbv12I GWGCWC 3 cut(s) 542, 591, 670
BbvI GCAGC 7 cut(s) 109, 145, 257, 332, 517, 736, 744
BccI CCATC 3 cut(s) 412, 493, 1479
BceAI ACGGC 3 cut(s) 38, 558, 1389
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 624, 1322
BciVI GTATCC 2 cut(s) 415, 1109
BcoDI GTCTC 2 cut(s) 13, 1051
BfaI CTAG 7 cut(s) 162, 177, 201, 275, 311, 371, 1056
BfmI CTRYAG 1 cut(s) 991
BfuAI ACCTGC 3 cut(s) 653, 1138, 1441
BfuI GTATCC 2 cut(s) 415, 1109
BglI GCCNNNNNGGC 1 cut(s) 22
BisI GCNGC 8 cut(s) 123, 159, 246, 321, 531, 604, 733, 750
BlsI GCNGC 8 cut(s) 124, 160, 247, 322, 532, 605, 734, 751
Bme1390I CCNGG 2 cut(s) 624, 1322
Bme18I GGWCC 3 cut(s) 951, 1001, 1187
BmgT120I GGNCC 3 cut(s) 951, 1001, 1187
BmiI GGNNCC 3 cut(s) 15, 450, 1384
BmrFI CCNGG 2 cut(s) 624, 1322
BmsI GCATC 3 cut(s) 376, 686, 691
BpiI GAAGAC 2 cut(s) 105, 404
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BpmI CTGGAG 2 cut(s) 1189, 1310
Bpu10I CCTNAGC 2 cut(s) 249, 1098
BpuEI CTTGAG 4 cut(s) 305, 428, 1448, 1459
BsaJI CCNNGG 5 cut(s) 479, 774, 1218, 1373, 1478
Bsc4I CCNNNNNNNGG 3 cut(s) 610, 1379, 1411
Bse1I ACTGG 6 cut(s) 214, 649, 678, 715, 730, 767
BseBI CCWGG 2 cut(s) 624, 1322
BseDI CCNNGG 5 cut(s) 479, 774, 1218, 1373, 1478
BseGI GGATG 6 cut(s) 340, 353, 391, 682, 1228, 1490
BseLI CCNNNNNNNGG 3 cut(s) 610, 1379, 1411
BseMII CTCAG 4 cut(s) 42, 1089, 1364, 1472
BseNI ACTGG 6 cut(s) 214, 649, 678, 715, 730, 767
BsePI GCGCGC 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 393, 1101
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 7 cut(s) 109, 145, 257, 332, 517, 736, 744
BseYI CCCAGC 1 cut(s) 533
Bsh1236I CGCG 2 cut(s) 237, 606
BshFI GGCC 2 cut(s) 569, 1404
BshNI GGYRCC 1 cut(s) 13
BsiHKAI GWGCWC 3 cut(s) 542, 591, 670
BslFI GGGAC 2 cut(s) 341, 1437
BslI CCNNNNNNNGG 3 cut(s) 610, 1379, 1411
BsmAI GTCTC 2 cut(s) 13, 1051
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 341, 1437
BsnI GGCC 2 cut(s) 569, 1404
Bsp1286I GDGCHC 4 cut(s) 57, 542, 591, 670
Bsp143I GATC 3 cut(s) 973, 1285, 1300
Bsp19I CCATGG 3 cut(s) 479, 1373, 1478
BspACI CCGC 7 cut(s) 39, 90, 300, 604, 747, 1294, 1325
BspANI GGCC 2 cut(s) 569, 1404
BspCNI CTCAG 4 cut(s) 43, 1090, 1363, 1471
BspFNI CGCG 2 cut(s) 237, 606
BspLI GGNNCC 3 cut(s) 15, 450, 1384
BspMI ACCTGC 3 cut(s) 653, 1138, 1441
BspPI GGATC 1 cut(s) 968
BspT107I GGYRCC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 1294
BsrI ACTGG 6 cut(s) 214, 649, 678, 715, 730, 767
BssECI CCNNGG 5 cut(s) 479, 774, 1218, 1373, 1478
BssHII GCGCGC 1 cut(s) 235
BssMI GATC 3 cut(s) 973, 1285, 1300
BssT1I CCWWGG 4 cut(s) 479, 774, 1373, 1478
Bst2UI CCWGG 2 cut(s) 624, 1322
Bst4CI ACNGT 3 cut(s) 13, 1023, 1075
Bst6I CTCTTC 2 cut(s) 35, 417
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 5 cut(s) 147, 237, 591, 1239, 1267
BstDEI CTNAG 5 cut(s) 51, 249, 1098, 1350, 1458
BstDSI CCRYGG 3 cut(s) 479, 1373, 1478
BstF5I GGATG 6 cut(s) 340, 353, 391, 682, 1228, 1490
BstFNI CGCG 2 cut(s) 237, 606
BstHHI GCGC 3 cut(s) 237, 239, 1271
BstKTI GATC 3 cut(s) 976, 1288, 1303
BstMAI GTCTC 2 cut(s) 13, 1051
BstMBI GATC 3 cut(s) 973, 1285, 1300
BstNI CCWGG 2 cut(s) 624, 1322
BstNSI RCATGY 2 cut(s) 582, 692
BstSCI CCNGG 2 cut(s) 622, 1320
BstSFI CTRYAG 1 cut(s) 991
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 2 cut(s) 237, 606
BstV1I GCAGC 7 cut(s) 109, 145, 257, 332, 517, 736, 744
BstV2I GAAGAC 2 cut(s) 105, 404
BstX2I RGATCY 1 cut(s) 973
BstXI CCANNNNNNTGG 1 cut(s) 1485
BstYI RGATCY 1 cut(s) 973
BsuI GTATCC 2 cut(s) 415, 1109
BsuRI GGCC 2 cut(s) 569, 1404
BtgI CCRYGG 3 cut(s) 479, 1373, 1478
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 6 cut(s) 340, 353, 391, 682, 1228, 1490
BtsI GCAGTG 1 cut(s) 1399
BtsIMutI CAGTG 3 cut(s) 671, 708, 1399
BveI ACCTGC 3 cut(s) 653, 1138, 1441
Cac8I GCNNGC 5 cut(s) 147, 237, 591, 1239, 1267
CfoI GCGC 3 cut(s) 237, 239, 1271
Cfr13I GGNCC 3 cut(s) 951, 1001, 1187
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 2 cut(s) 1024, 1489
CspCI CAANNNNNGTGG 2 cut(s) 1375, 1410
CviQI GTAC 2 cut(s) 1024, 1489
DdeI CTNAG 5 cut(s) 51, 249, 1098, 1350, 1458
DpnI GATC 3 cut(s) 975, 1287, 1302
DpnII GATC 3 cut(s) 973, 1285, 1300
DraI TTTAAA 1 cut(s) 1107
DraIII CACNNNGTG 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 1402
Eam1104I CTCTTC 2 cut(s) 35, 417
EarI CTCTTC 2 cut(s) 35, 417
Ecl136II GAGCTC 1 cut(s) 589
Eco130I CCWWGG 4 cut(s) 479, 774, 1373, 1478
Eco24I GRGCYC 2 cut(s) 57, 591
Eco47I GGWCC 3 cut(s) 951, 1001, 1187
Eco53kI GAGCTC 1 cut(s) 589
Eco57I CTGAAG 4 cut(s) 153, 396, 543, 678
EcoICRI GAGCTC 1 cut(s) 589
EcoRII CCWGG 2 cut(s) 622, 1320
EcoT14I CCWWGG 4 cut(s) 479, 774, 1373, 1478
EcoT38I GRGCYC 2 cut(s) 57, 591
ErhI CCWWGG 4 cut(s) 479, 774, 1373, 1478
Esp3I CGTCTC 1 cut(s) 13
FalI AAGNNNNNCTT 2 cut(s) 1103, 1135
FaqI GGGAC 2 cut(s) 341, 1437
FauI CCCGC 2 cut(s) 97, 1318
FblI GTMKAC 1 cut(s) 616
Fnu4HI GCNGC 8 cut(s) 123, 159, 246, 321, 531, 604, 733, 750
FokI GGATG 6 cut(s) 347, 360, 398, 669, 1235, 1497
FriOI GRGCYC 2 cut(s) 57, 591
Fsp4HI GCNGC 8 cut(s) 123, 159, 246, 321, 531, 604, 733, 750
FspBI CTAG 7 cut(s) 162, 177, 201, 275, 311, 371, 1056
GlaI GCGC 3 cut(s) 236, 238, 1270
GluI GCNGC 8 cut(s) 123, 159, 246, 321, 531, 604, 733, 750
GsaI CCCAGC 1 cut(s) 537
GsuI CTGGAG 2 cut(s) 1189, 1310
HaeIII GGCC 2 cut(s) 569, 1404
HhaI GCGC 3 cut(s) 237, 239, 1271
Hin6I GCGC 3 cut(s) 235, 237, 1269
HinP1I GCGC 3 cut(s) 235, 237, 1269
HincII GTYRAC 2 cut(s) 694, 1342
HindII GTYRAC 2 cut(s) 694, 1342
HinfI GANTC 3 cut(s) 400, 1247, 1456
HphI GGTGA 2 cut(s) 772, 1465
Hpy166II GTNNAC 6 cut(s) 305, 540, 617, 694, 951, 1342
Hpy188I TCNGA 8 cut(s) 133, 271, 417, 562, 642, 973, 1471, 1511
Hpy188III TCNNGA 8 cut(s) 284, 311, 508, 862, 894, 1097, 1168, 1289
Hpy8I GTNNAC 6 cut(s) 305, 540, 617, 694, 951, 1342
HpyAV CCTTC 7 cut(s) 371, 531, 567, 980, 1058, 1105, 1509
HpyCH4III ACNGT 3 cut(s) 13, 1023, 1075
HpyCH4V TGCA 7 cut(s) 125, 245, 389, 540, 907, 1070, 1241
HpyF3I CTNAG 5 cut(s) 51, 249, 1098, 1350, 1458
HspAI GCGC 3 cut(s) 235, 237, 1269
Kzo9I GATC 3 cut(s) 973, 1285, 1300
LmnI GCTCC 7 cut(s) 142, 523, 586, 673, 778, 1291, 1375
Lsp1109I GCAGC 7 cut(s) 109, 145, 257, 332, 517, 736, 744
LweI GCATC 3 cut(s) 376, 686, 691
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 7 cut(s) 162, 177, 201, 275, 311, 371, 1056
MaeIII GTNAC 2 cut(s) 1147, 1453
MalI GATC 3 cut(s) 975, 1287, 1302
MbiI CCGCTC 1 cut(s) 1294
MboI GATC 3 cut(s) 973, 1285, 1300
MboII GAAGA 6 cut(s) 22, 110, 146, 404, 409, 995
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 4 cut(s) 57, 542, 591, 670
MluCI AATT 3 cut(s) 755, 1230, 1409
MlyI GAGTC 3 cut(s) 394, 1241, 1450
MroXI GAANNNNTTC 1 cut(s) 1208
MseI TTAA 4 cut(s) 429, 633, 963, 1106
MslI CAYNNNNRTG 2 cut(s) 687, 1483
MspA1I CMGCKG 2 cut(s) 122, 749
MspR9I CCNGG 2 cut(s) 624, 1322
MvaI CCWGG 2 cut(s) 624, 1322
MvnI CGCG 2 cut(s) 237, 606
NcoI CCATGG 3 cut(s) 479, 1373, 1478
NdeII GATC 3 cut(s) 973, 1285, 1300
NlaIV GGNNCC 3 cut(s) 15, 450, 1384
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 1147, 1453
NspI RCATGY 2 cut(s) 582, 692
PaqCI CACCTGC 2 cut(s) 653, 1441
PauI GCGCGC 1 cut(s) 235
PciI ACATGT 2 cut(s) 578, 688
PdmI GAANNNNTTC 1 cut(s) 1208
PflMI CCANNNNNTGG 1 cut(s) 1379
PkrI GCNGC 8 cut(s) 124, 160, 247, 322, 532, 605, 734, 751
PleI GAGTC 3 cut(s) 394, 1241, 1450
PpsI GAGTC 3 cut(s) 394, 1241, 1450
PscI ACATGT 2 cut(s) 578, 688
Psp124BI GAGCTC 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 622, 1320
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 2 cut(s) 622, 1320
PspN4I GGNNCC 3 cut(s) 15, 450, 1384
PspPI GGNCC 3 cut(s) 951, 1001, 1187
PsuI RGATCY 1 cut(s) 973
PteI GCGCGC 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 2 cut(s) 1025, 1490
RsaNI GTAC 2 cut(s) 1024, 1489
RseI CAYNNNNRTG 2 cut(s) 687, 1483
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 4 cut(s) 429, 633, 963, 1106
SatI GCNGC 8 cut(s) 123, 159, 246, 321, 531, 604, 733, 750
Sau3AI GATC 3 cut(s) 973, 1285, 1300
Sau96I GGNCC 3 cut(s) 951, 1001, 1187
SchI GAGTC 3 cut(s) 394, 1241, 1450
ScrFI CCNGG 2 cut(s) 624, 1322
SduI GDGCHC 4 cut(s) 57, 542, 591, 670
SexAI ACCWGGT 1 cut(s) 622
SfaNI GCATC 3 cut(s) 376, 686, 691
SfcI CTRYAG 1 cut(s) 991
SinI GGWCC 3 cut(s) 951, 1001, 1187
SmiMI CAYNNNNRTG 2 cut(s) 687, 1483
SmlI CTYRAG 4 cut(s) 284, 443, 1427, 1438
SmoI CTYRAG 4 cut(s) 284, 443, 1427, 1438
Sse9I AATT 3 cut(s) 755, 1230, 1409
SsiI CCGC 7 cut(s) 39, 90, 300, 604, 747, 1294, 1325
SspI AATATT 2 cut(s) 359, 637
SspMI CTAG 7 cut(s) 162, 177, 201, 275, 311, 371, 1056
SstI GAGCTC 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 622, 1320
StyI CCWWGG 4 cut(s) 479, 774, 1373, 1478
TaaI ACNGT 3 cut(s) 13, 1023, 1075
TaqI TCGA 2 cut(s) 819, 895
TasI AATT 3 cut(s) 755, 1230, 1409
TauI GCSGC 1 cut(s) 606
Tru1I TTAA 4 cut(s) 429, 633, 963, 1106
Tru9I TTAA 4 cut(s) 429, 633, 963, 1106
TscAI CASTG 3 cut(s) 678, 715, 1399
TseFI GTSAC 2 cut(s) 1147, 1453
TseI GCWGC 7 cut(s) 122, 158, 245, 320, 530, 732, 749
Tsp45I GTSAC 2 cut(s) 1147, 1453
TspDTI ATGAA 5 cut(s) 22, 330, 924, 1077, 1488
TspGWI ACGGA 3 cut(s) 53, 201, 480
TspRI CASTG 3 cut(s) 678, 715, 1399
Van91I CCANNNNNTGG 1 cut(s) 1379
VneI GTGCAC 1 cut(s) 538
VpaK11BI GGWCC 3 cut(s) 951, 1001, 1187
XbaI TCTAGA 1 cut(s) 310
XceI RCATGY 2 cut(s) 582, 692
XmiI GTMKAC 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 1208
XspI CTAG 7 cut(s) 162, 177, 201, 275, 311, 371, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.