Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011854

Physical Location & Seq

Genomic Coordinates Reverse (-)

56441905 .. 56445845

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0428000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAGGATCCGAGTCGCCTACCTCGCCCGACTCAATTCCAGTACCATCGTCTACATTCTCACTCGCTCCAGGCTCCGACCTCATCATCTCTGCCGTCGAATCCACGCCGTGTTCGCCACTTCACTCCGCCGCCGGACGATGAAGATTCCAAACCTTTAAGCCTCTCCGATAAGCCTCTCAGTTCACGCGCCGACGCCTACGCCGCTTTTTCTAAGCTTGAGTTGGGGAGGATTAAAGAAGAAGCGGATGACTGTGAGGCTCAGACTAGTGGGCAGGCAACTGCTGCTGACCAAAAGAAAGTACTTAATGATCCTGTATCCACTATACCAAAGTCCTGGAGAGGTGTACAGAAGATCAGTAAATCAAGGGTTGCTAAGCCTATCAAATCTGAGACTGTAAATGCAGAGTCTCAACAAAATGGCGTGACTCCAGTTACTACTTGCCGTTTTGACAGTTCTTTAGGCTTGTTAACTAAGAAATTTGTCAGATTACTTCAGGATACCAAGGATAGAACTCTTGATTTAAACAAAGCAGCAAAGGTGTTGGAGGTTCAAAAGAGGAGGATATATGATATTACAAACGTTCTTGAAGGAATAAATTTGTTAGTAAAAGTTTCAAAGAACCACGTCCGCTGGAAGGGACATGATGTGCCAGGGGAACTGGATGATCAAGTTTTTAAATTAAAGGAGGAGGTTGAATATTTATGTGCTGAAGAATGCAGGCTTAATGACGCTATAAGGGAAAGACGAGAGCTTATAAGGACTGTGAAGGAAGATAGGAACAATAAAAAGTACCTCTTTTTGACGGAGGGAGATATCTTGAGCCTTCCCTGCTTCCAGAATCAAACTCTCATTGCAATAAAAGCTCCTCATGCTAGTACTATTGAAGTTCTTGATCCTGATGAGGATATTGATTTTCCCCAAGGACAGTACAGAATGACGGTCAGAAGCGCCACAGGACAGATAGATTGTTACCTCTTAAGTAATTACCAAGGCCAACAAGAAGGCATTACCGTTAAGCAAGAAAACTCAACAGGTTCATCCCCTTGCAATAACACTGGCTATTGCAGAATGGAAGATGGAGGGATGTCACCAGAAATTCATAGCTTACCAGGCGCAGAGGCATCTTCTGGGATGCAGAAGATTGTTCTTTCGCACTTGGATGCCAACGATGACTATTGGTTTAGATCAGAACCTGAAGTCAGCCTTACAGATCTCTGGGCAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008802 GO:0009414 GO:0009415 GO:0009507 GO:0009516 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0030312 GO:0033554 GO:0034059 GO:0036293 GO:0036294 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

Aldedh

Protein Analysis

410

Amino Acids

46.12

Weight (kDa)

5.93

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	151 - 214	1.4e-25	E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB	PF16421	228 - 328	5e-24	E2F transcription factor CC-MB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48170
fragaria_vesca	FvH4_5g16350
malus_domestica	MD06G1181400.v1.1 MD06G1181500.v1.1 MD14G1187300.v1.1 MD14G1187400.v1.1
prunus_persica	Prupe.5G179700_v2.0.a1 Prupe.5G179800_v2.0.a1
pyrus_communis	pycom06g16050 pycom14g15530
rosa_chinensis	RchiOBHm_Chr7g0179781
rosa_multiflora	Rmu_sc0004156.1_g000007
rosa_roxburghii	Rroxscaffold_3G00273480
rosa_rugosa	Rorug06G0428000
rosa_samantha	Rh7AG027700 Rh7BG026900 Rh7CG028800 Rh7DG028300
rosa_wichuraiana	Rw7G002220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	189
AciI	CCGC	5 cut(s)	128, 131, 204, 245, 631
AclI	AACGTT	1 cut(s)	582
AclWI	GGATC	4 cut(s)	2, 15, 305, 890
AcsI	RAATTY	3 cut(s)	479, 598, 1098
AcuI	CTGAAG	3 cut(s)	479, 732, 1218
AcyI	GRCGYC	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	6 cut(s)	44, 303, 348, 794, 880, 932
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflII	CTTAAG	1 cut(s)	979
AgsI	TTSAA	5 cut(s)	554, 590, 618, 698, 887
AhlI	ACTAGT	1 cut(s)	266
AjiI	CACGTC	1 cut(s)	628
AjnI	CCWGG	4 cut(s)	69, 335, 652, 1111
AluBI	AGCT	4 cut(s)	217, 754, 866, 1107
AluI	AGCT	4 cut(s)	217, 754, 866, 1107
Alw26I	GTCTC	2 cut(s)	386, 414
AlwI	GGATC	4 cut(s)	2, 15, 305, 890
AlwNI	CAGNNNCTG	1 cut(s)	1196
AoxI	GGCC	1 cut(s)	994
ApeKI	GCWGC	2 cut(s)	284, 533
ApoI	RAATTY	3 cut(s)	479, 598, 1098
AspLEI	GCGC	3 cut(s)	191, 953, 1118
AsuHPI	GGTGA	1 cut(s)	1083
BamHI	GGATCC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	271, 545
BccI	CCATC	2 cut(s)	54, 1073
BceAI	ACGGC	3 cut(s)	79, 93, 429
BciT130I	CCWGG	4 cut(s)	71, 337, 654, 1113
BciVI	GTATCC	2 cut(s)	328, 493
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	386, 414
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	2 cut(s)	267, 876
BfoI	RGCGCY	1 cut(s)	954
BfrI	CTTAAG	1 cut(s)	979
BfuI	GTATCC	2 cut(s)	328, 493
BglII	AGATCT	1 cut(s)	1213
BisI	GCNGC	4 cut(s)	131, 204, 285, 534
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	4 cut(s)	132, 205, 286, 535
BmcAI	AGTACT	2 cut(s)	303, 880
Bme1390I	CCNGG	4 cut(s)	71, 337, 654, 1113
BmgBI	CACGTC	1 cut(s)	628
BmiI	GGNNCC	2 cut(s)	9, 75
BmrFI	CCNGG	4 cut(s)	71, 337, 654, 1113
BmsI	GCATC	3 cut(s)	1125, 1133, 1153
BpmI	CTGGAG	3 cut(s)	53, 358, 414
Bpu1102I	GCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	239, 841
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	504, 653, 922, 991
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse1I	ACTGG	4 cut(s)	40, 431, 666, 1063
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	4 cut(s)	71, 337, 654, 1113
BseDI	CCNNGG	4 cut(s)	504, 653, 922, 991
BseGI	GGATG	6 cut(s)	253, 670, 1040, 1092, 1140, 1168
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	3 cut(s)	193, 275, 381
BseNI	ACTGG	4 cut(s)	40, 431, 666, 1063
BseRI	GAGGAG	3 cut(s)	574, 704, 858
BseXI	GCAGC	2 cut(s)	271, 545
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	996
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	654
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	2 cut(s)	386, 414
BsmFI	GGGAC	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	1 cut(s)	996
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	7 cut(s)	7, 310, 354, 667, 895, 1187, 1213
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	5 cut(s)	128, 131, 204, 245, 631
BspANI	GGCC	1 cut(s)	996
BspCNI	CTCAG	3 cut(s)	192, 274, 382
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	9, 75
BspPI	GGATC	4 cut(s)	2, 15, 305, 890
BspTI	CTTAAG	1 cut(s)	979
BsrDI	GCAATG	1 cut(s)	852
BsrGI	TGTACA	1 cut(s)	346
BsrI	ACTGG	4 cut(s)	40, 431, 666, 1063
BssECI	CCNNGG	4 cut(s)	504, 653, 922, 991
BssMI	GATC	7 cut(s)	7, 310, 354, 667, 895, 1187, 1213
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	3 cut(s)	504, 922, 991
Bst2UI	CCWGG	4 cut(s)	71, 337, 654, 1113
Bst4CI	ACNGT	7 cut(s)	254, 397, 455, 766, 930, 943, 1015
BstACI	GRCGYC	1 cut(s)	195
BstAFI	CTTAAG	1 cut(s)	979
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	276, 722
BstDEI	CTNAG	6 cut(s)	179, 213, 261, 375, 390, 474
BstF5I	GGATG	6 cut(s)	253, 670, 1040, 1092, 1140, 1168
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	954
BstHHI	GCGC	3 cut(s)	191, 953, 1118
BstKTI	GATC	7 cut(s)	10, 313, 357, 670, 898, 1190, 1216
BstMAI	GTCTC	2 cut(s)	386, 414
BstMBI	GATC	7 cut(s)	7, 310, 354, 667, 895, 1187, 1213
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 114, 203, 284, 831, 863, 872, 1113
BstNI	CCWGG	4 cut(s)	71, 337, 654, 1113
BstSCI	CCNGG	4 cut(s)	69, 335, 652, 1111
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	271, 545
BstX2I	RGATCY	2 cut(s)	7, 1213
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	2 cut(s)	7, 1213
BsuI	GTATCC	2 cut(s)	328, 493
BsuRI	GGCC	1 cut(s)	996
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	6 cut(s)	253, 670, 1040, 1092, 1140, 1168
BtsIMutI	CAGTG	1 cut(s)	1056
Cac8I	GCNNGC	2 cut(s)	276, 722
CaiI	CAGNNNCTG	1 cut(s)	1196
CfoI	GCGC	3 cut(s)	191, 953, 1118
CseI	GACGC	2 cut(s)	203, 740
Csp6I	GTAC	6 cut(s)	43, 302, 347, 793, 879, 931
CviAII	CATG	2 cut(s)	644, 872
CviQI	GTAC	6 cut(s)	43, 302, 347, 793, 879, 931
DdeI	CTNAG	6 cut(s)	179, 213, 261, 375, 390, 474
DpnI	GATC	7 cut(s)	9, 312, 356, 669, 897, 1189, 1215
DpnII	GATC	7 cut(s)	7, 310, 354, 667, 895, 1187, 1213
DraI	TTTAAA	2 cut(s)	525, 679
DraIII	CACNNNGTG	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	3 cut(s)	504, 922, 991
Eco32I	GATATC	1 cut(s)	817
Eco57I	CTGAAG	3 cut(s)	479, 732, 1218
EcoRII	CCWGG	4 cut(s)	69, 335, 652, 1111
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	3 cut(s)	504, 922, 991
ErhI	CCWWGG	3 cut(s)	504, 922, 991
FaeI	CATG	2 cut(s)	647, 875
FaiI	YATR	9 cut(s)	326, 568, 570, 645, 706, 737, 758, 873, 1104
FalI	AAGNNNNNCTT	4 cut(s)	782, 814, 1191, 1223
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	2 cut(s)	643, 871
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	131, 204, 285, 534
FokI	GGATG	6 cut(s)	260, 677, 1027, 1099, 1147, 1175
Fsp4HI	GCNGC	4 cut(s)	131, 204, 285, 534
FspBI	CTAG	2 cut(s)	267, 876
GlaI	GCGC	3 cut(s)	190, 952, 1117
GluI	GCNGC	4 cut(s)	131, 204, 285, 534
GsuI	CTGGAG	3 cut(s)	53, 358, 414
HaeII	RGCGCY	1 cut(s)	954
HaeIII	GGCC	1 cut(s)	996
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	2 cut(s)	203, 740
HhaI	GCGC	3 cut(s)	191, 953, 1118
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	647, 875
Hin6I	GCGC	3 cut(s)	189, 951, 1116
HinP1I	GCGC	3 cut(s)	189, 951, 1116
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	7 cut(s)	13, 31, 100, 146, 407, 427, 841
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	1083
Hpy166II	GTNNAC	4 cut(s)	53, 185, 347, 471
Hpy188I	TCNGA	8 cut(s)	12, 78, 169, 264, 391, 488, 947, 1192
Hpy188III	TCNNGA	7 cut(s)	497, 518, 587, 820, 838, 893, 899
Hpy8I	GTNNAC	4 cut(s)	53, 185, 347, 471
Hpy99I	CGWCG	2 cut(s)	100, 197
HpyAV	CCTTC	5 cut(s)	584, 631, 763, 836, 998
HpyCH4III	ACNGT	7 cut(s)	254, 397, 455, 766, 930, 943, 1015
HpyCH4IV	ACGT	2 cut(s)	582, 627
HpyCH4V	TGCA	6 cut(s)	404, 720, 857, 1050, 1068, 1138
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 114, 203, 284, 831, 863, 872, 1113
HpyF3I	CTNAG	6 cut(s)	179, 213, 261, 375, 390, 474
HpySE526I	ACGT	2 cut(s)	582, 627
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	647, 875
HspAI	GCGC	3 cut(s)	189, 951, 1116
Ksp22I	TGATCA	1 cut(s)	667
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	7 cut(s)	7, 310, 354, 667, 895, 1187, 1213
LmnI	GCTCC	3 cut(s)	72, 79, 871
Lsp1109I	GCAGC	2 cut(s)	271, 545
LweI	GCATC	3 cut(s)	1125, 1133, 1153
MaeI	CTAG	2 cut(s)	267, 876
MaeII	ACGT	2 cut(s)	582, 627
MaeIII	GTNAC	4 cut(s)	424, 433, 971, 1089
MalI	GATC	7 cut(s)	9, 312, 356, 669, 897, 1189, 1215
MboI	GATC	7 cut(s)	7, 310, 354, 667, 895, 1187, 1213
MboII	GAAGA	8 cut(s)	155, 251, 364, 725, 785, 1088, 1119, 1153
MflI	RGATCY	2 cut(s)	7, 1213
MluCI	AATT	7 cut(s)	35, 479, 598, 680, 985, 1098, 1228
MlyI	GAGTC	4 cut(s)	22, 25, 416, 421
MmeI	TCCRAC	2 cut(s)	101, 525
MslI	CAYNNNNRTG	1 cut(s)	1161
MspA1I	CMGCKG	1 cut(s)	633
MspCI	CTTAAG	1 cut(s)	979
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	4 cut(s)	71, 337, 654, 1113
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	4 cut(s)	71, 337, 654, 1113
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	8 cut(s)	24, 114, 203, 284, 831, 863, 872, 1113
NdeII	GATC	7 cut(s)	7, 310, 354, 667, 895, 1187, 1213
NlaIII	CATG	2 cut(s)	647, 875
NlaIV	GGNNCC	2 cut(s)	9, 75
NmuCI	GTSAC	2 cut(s)	424, 1089
PctI	GAATGC	1 cut(s)	722
PfeI	GAWTC	3 cut(s)	100, 146, 841
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	132, 205, 286, 535
PleI	GAGTC	4 cut(s)	21, 25, 415, 421
PpsI	GAGTC	4 cut(s)	21, 25, 415, 421
PsiI	TTATAA	1 cut(s)	758
Psp1406I	AACGTT	1 cut(s)	582
Psp6I	CCWGG	4 cut(s)	69, 335, 652, 1111
PspGI	CCWGG	4 cut(s)	69, 335, 652, 1111
PspN4I	GGNNCC	2 cut(s)	9, 75
PstNI	CAGNNNCTG	1 cut(s)	1196
PsuI	RGATCY	2 cut(s)	7, 1213
RsaI	GTAC	6 cut(s)	44, 303, 348, 794, 880, 932
RsaNI	GTAC	6 cut(s)	43, 302, 347, 793, 879, 931
RseI	CAYNNNNRTG	1 cut(s)	1161
SatI	GCNGC	4 cut(s)	131, 204, 285, 534
Sau3AI	GATC	7 cut(s)	7, 310, 354, 667, 895, 1187, 1213
ScaI	AGTACT	2 cut(s)	303, 880
SchI	GAGTC	4 cut(s)	22, 25, 416, 421
ScrFI	CCNGG	4 cut(s)	71, 337, 654, 1113
SfaNI	GCATC	3 cut(s)	1125, 1133, 1153
SmiMI	CAYNNNNRTG	1 cut(s)	1161
SmlI	CTYRAG	3 cut(s)	218, 820, 979
SmoI	CTYRAG	3 cut(s)	218, 820, 979
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	7 cut(s)	35, 479, 598, 680, 985, 1098, 1228
SsiI	CCGC	5 cut(s)	128, 131, 204, 245, 631
SspI	AATATT	1 cut(s)	701
SspMI	CTAG	2 cut(s)	267, 876
StyD4I	CCNGG	4 cut(s)	69, 335, 652, 1111
StyI	CCWWGG	3 cut(s)	504, 922, 991
TaaI	ACNGT	7 cut(s)	254, 397, 455, 766, 930, 943, 1015
TaiI	ACGT	2 cut(s)	585, 630
TaqI	TCGA	1 cut(s)	98
TasI	AATT	7 cut(s)	35, 479, 598, 680, 985, 1098, 1228
TatI	WGTACW	4 cut(s)	301, 346, 878, 930
TauI	GCSGC	2 cut(s)	133, 206
TfiI	GAWTC	3 cut(s)	100, 146, 841
TscAI	CASTG	1 cut(s)	1063
TseFI	GTSAC	2 cut(s)	424, 1089
TseI	GCWGC	2 cut(s)	284, 533
Tsp45I	GTSAC	2 cut(s)	424, 1089
TspDTI	ATGAA	3 cut(s)	156, 1029, 1091
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	1 cut(s)	1063
Vha464I	CTTAAG	1 cut(s)	979
XapI	RAATTY	3 cut(s)	479, 598, 1098
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	2 cut(s)	267, 876
ZrmI	AGTACT	2 cut(s)	303, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.