FvH4_5g16350

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
9305642 .. 9310380
4739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16350.t1

Sequence Viewer

Length: 1518 bp
ATGGCGATCCAGATACCGAGTCGGCAGCTCTTCATCGGCGGCGAGTGGAAGGAACCAGCTCTCAAGAAACGCATCCCCATCATCAACCCCGCCACCGAACAAATCATCGGGGATATTGCGGCAGCTACAGCTGAAGATGTGGAGATTGCTGTGGAGGCGGCACGGAAGGCTCTTGCCAGGAACAAGGGGAAAGATTGGGCATCGGCGCCGGGGGCGGTTCGTGCCAAGTATTTGAGAGCCATTGCTGCTAAGATAACAGAGAAAAAATCCGAGCTAGCAAAACTCGAAGCAACTGATTGTGGGAAACCGCTGGATGAAGCCTTATGGGACATGGAAGATGTTGCCGGGTGTTTTGAGTACTATGCAGACCTTGCTGATGGTTTGGATAAACAGCAAAAGGTTTCTATTGCACTTCCTATGGAGACATTTAAAACTCATGTTCTTAAGGAGCCGATTGGGGTTGTTGCGTTGATTACTCCATGGAACTACCCTTTATTAATGGCTACATGGAAGGTAGCTCCTGCCTTGGCTGCTGGGTGCGCTGCAATACTGAAGCCGTCTGAGTTGGCATCAGTAACTTGTTTGGAGCTAGCTGAGGTGTGTAGAGAGGTGGGTCTTCCTCCTGGTGTCCTCAATATTCTGACCGGGCTGGGCCATGAAGCTGGCGCTCCTTTGGCTTCTCATCCCCATGTTGATAAGGTTGCATTTACTGGAAGTACACTCACAGGGAGCAAGATTATGTCAGCAGCAGCTCAACAGGTTAAGCCTGTTTCGCTGGAGCTTGGAGGGAAAAGCCCAATTGTTGTTTTTGATGATGTTGATATTGACAAAGCTGCTGAATGGACCGCCTTTGGCATCTTTTGGACTAACGGTCAGATTTGCAGTGCAACATCCCGTCTTATACTGCATGAAAGTATTGCATCAAAATTCTTAGAGAGGCTTGCTGAATGGTGCAAAAACATTAAGATTTCAGATCCTTTGGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTTCTCAAGGGCAGTATGAGAAAATATTGAAGTTCATCTCAACAGCTGAGAGTGAAGGCGCAAAAGTTTTGTGCGGTGGGGTTCGTCCTGAGCATCTGAAGAAAGGATATTACATTGAACCAACCGTCATCACCGATGTGACTACCTCCATGCAAATTTGGAAAGAAGAGGTTTTTGGACCTGTTCTTTGTGTCAAAACATTTAGTTCAGAAGAAGAAGCTATTGAATTAGCAAATGACACCCAATTTGGCTTGGGTGCTGCTGTCATATCAAATGATCTAGAAAGGTGTGAGCGTGTTTCGAAGGCCTTTCAGGCAGGAATTGTCTGGATCAATTGTTCACAACCATGCTTCACTCAGGCTCCTTGGGGTGGCAACAAACGTAGTGGTTTCGGGCGTGAATTAGGGACATGGGGACTTGAGAATTACATGACTGTGAAGCAGGTTACTCAATATGTGTCTGATGAACCTTGGGGTTGGTACAAGTCACCTTCACCTTCAAAACTGTGA

Protein Analysis

506

Amino Acids

54.82

Weight (kDa)

5.47

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 16 - 485 1e-172 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1441
AccB1I GGYRCC 1 cut(s) 205
AciI CCGC 8 cut(s) 39, 90, 119, 158, 215, 308, 846, 1083
AclWI GGATC 2 cut(s) 968, 1346
AcsI RAATTY 2 cut(s) 926, 1164
AcuI CTGAAG 3 cut(s) 153, 572, 1127
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 3 cut(s) 359, 718, 1490
AfiI CCNNNNNNNGG 1 cut(s) 1379
AflII CTTAAG 1 cut(s) 443
AgsI TTSAA 4 cut(s) 1039, 1127, 1235, 1509
AhdI GACNNNNNGTC 1 cut(s) 870
AjnI CCWGG 2 cut(s) 176, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 1167, 1199
AleI CACNNNNGTG 1 cut(s) 1145
AloI GAACNNNNNNTCC 2 cut(s) 1330, 1362
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 2 cut(s) 968, 1346
AoxI GGCC 3 cut(s) 652, 1000, 1314
ApeKI GCWGC 9 cut(s) 25, 122, 245, 530, 542, 746, 749, 833, 1268
ApoI RAATTY 2 cut(s) 926, 1164
ArsI GACNNNNNNTTYG 4 cut(s) 1179, 1211, 1238, 1270
AseI ATTAAT 1 cut(s) 497
AspLEI GCGC 4 cut(s) 208, 542, 668, 1070
AspS9I GGNCC 4 cut(s) 652, 843, 1001, 1187
AsuC2I CCSGG 3 cut(s) 210, 346, 646
AsuHPI GGTGA 3 cut(s) 1132, 1488, 1494
AsuII TTCGAA 1 cut(s) 1310
AsuNHI GCTAGC 2 cut(s) 274, 589
AvaII GGWCC 2 cut(s) 843, 1187
BanI GGYRCC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 608
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 9 cut(s) 37, 134, 232, 517, 529, 758, 761, 820, 1255
BccI CCATC 2 cut(s) 86, 371
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 2 cut(s) 178, 624
BcnI CCSGG 3 cut(s) 210, 346, 646
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 3 cut(s) 275, 590, 1289
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 2 cut(s) 209, 669
BfrI CTTAAG 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 1441
BglI GCCNNNNNGGC 1 cut(s) 1322
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 5 cut(s) 178, 210, 346, 624, 646
Bme18I GGWCC 2 cut(s) 843, 1187
BmeRI GACNNNNNGTC 1 cut(s) 870
BmgT120I GGNCC 4 cut(s) 652, 843, 1001, 1187
BmiI GGNNCC 4 cut(s) 54, 207, 450, 1371
BmrFI CCNGG 5 cut(s) 178, 210, 346, 624, 646
BmsI GCATC 6 cut(s) 81, 209, 578, 864, 929, 1111
BmtI GCTAGC 2 cut(s) 278, 593
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 1 cut(s) 797
Bpu10I CCTNAGC 2 cut(s) 594, 1098
Bpu14I TTCGAA 1 cut(s) 1310
BpuEI CTTGAG 3 cut(s) 47, 999, 1448
BpuMI CCSGG 3 cut(s) 210, 346, 646
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 5 cut(s) 209, 479, 525, 1373, 1478
BsaXI ACNNNNNCTCC 2 cut(s) 1354, 1384
Bsc4I CCNNNNNNNGG 1 cut(s) 1379
Bse1I ACTGG 1 cut(s) 715
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 178, 624
BseDI CCNNGG 5 cut(s) 209, 479, 525, 1373, 1478
BseGI GGATG 4 cut(s) 72, 319, 682, 890
BseLI CCNNNNNNNGG 1 cut(s) 1379
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 5 cut(s) 552, 585, 1047, 1089, 1379
BseNI ACTGG 1 cut(s) 715
BseXI GCAGC 9 cut(s) 37, 134, 232, 517, 529, 758, 761, 820, 1255
BseYI CCCAGC 2 cut(s) 533, 649
BshFI GGCC 3 cut(s) 654, 1002, 1316
BshNI GGYRCC 1 cut(s) 205
BsiSI CCGG 3 cut(s) 209, 345, 645
BslFI GGGAC 3 cut(s) 341, 1429, 1437
BslI CCNNNNNNNGG 1 cut(s) 1379
BsmAI GTCTC 1 cut(s) 416
BsmFI GGGAC 3 cut(s) 341, 1429, 1437
BsnI GGCC 3 cut(s) 654, 1002, 1316
Bsp119I TTCGAA 1 cut(s) 1310
Bsp143I GATC 4 cut(s) 6, 973, 1285, 1338
Bsp19I CCATGG 1 cut(s) 479
BspACI CCGC 8 cut(s) 39, 90, 119, 158, 215, 308, 846, 1083
BspANI GGCC 3 cut(s) 654, 1002, 1316
BspCNI CTCAG 5 cut(s) 553, 586, 1048, 1090, 1378
BspLI GGNNCC 4 cut(s) 54, 207, 450, 1371
BspMI ACCTGC 1 cut(s) 1441
BspOI GCTAGC 2 cut(s) 278, 593
BspPI GGATC 2 cut(s) 968, 1346
BspQI GCTCTTC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 1310
BspT107I GGYRCC 1 cut(s) 205
BspTI CTTAAG 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 715
BssECI CCNNGG 5 cut(s) 209, 479, 525, 1373, 1478
BssMI GATC 4 cut(s) 6, 973, 1285, 1338
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 4 cut(s) 479, 525, 1373, 1478
Bst2UI CCWGG 2 cut(s) 178, 624
Bst4CI ACNGT 4 cut(s) 872, 1135, 1444, 1515
Bst6I CTCTTC 2 cut(s) 35, 1170
BstACI GRCGYC 1 cut(s) 206
BstAFI CTTAAG 1 cut(s) 443
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 1310
BstC8I GCNNGC 5 cut(s) 276, 591, 664, 942, 995
BstDEI CTNAG 7 cut(s) 249, 561, 594, 931, 1056, 1098, 1365
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 4 cut(s) 72, 319, 682, 890
BstH2I RGCGCY 2 cut(s) 209, 669
BstHHI GCGC 4 cut(s) 208, 542, 668, 1070
BstKTI GATC 4 cut(s) 9, 976, 1288, 1341
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 4 cut(s) 6, 973, 1285, 1338
BstNI CCWGG 2 cut(s) 178, 624
BstSCI CCNGG 5 cut(s) 176, 208, 344, 622, 644
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 9 cut(s) 37, 134, 232, 517, 529, 758, 761, 820, 1255
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 973
BstXI CCANNNNNNTGG 1 cut(s) 662
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 3 cut(s) 654, 1002, 1316
BtgI CCRYGG 1 cut(s) 479
BtsCI GGATG 4 cut(s) 72, 319, 682, 890
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 1 cut(s) 889
BveI ACCTGC 1 cut(s) 1441
Cac8I GCNNGC 5 cut(s) 276, 591, 664, 942, 995
CfoI GCGC 4 cut(s) 208, 542, 668, 1070
Cfr13I GGNCC 4 cut(s) 652, 843, 1001, 1187
Csp6I GTAC 3 cut(s) 358, 717, 1489
CspCI CAANNNNNGTGG 2 cut(s) 1375, 1410
CviQI GTAC 3 cut(s) 358, 717, 1489
DdeI CTNAG 7 cut(s) 249, 561, 594, 931, 1056, 1098, 1365
DinI GGCGCC 1 cut(s) 207
DpnI GATC 4 cut(s) 8, 975, 1287, 1340
DpnII GATC 4 cut(s) 6, 973, 1285, 1338
DraI TTTAAA 1 cut(s) 430
DriI GACNNNNNGTC 1 cut(s) 870
Eam1104I CTCTTC 2 cut(s) 35, 1170
Eam1105I GACNNNNNGTC 1 cut(s) 870
EarI CTCTTC 2 cut(s) 35, 1170
Eco130I CCWWGG 4 cut(s) 479, 525, 1373, 1478
Eco147I AGGCCT 1 cut(s) 1316
Eco47I GGWCC 2 cut(s) 843, 1187
Eco57I CTGAAG 3 cut(s) 153, 572, 1127
EcoRII CCWGG 2 cut(s) 176, 622
EcoT14I CCWWGG 4 cut(s) 479, 525, 1373, 1478
EgeI GGCGCC 1 cut(s) 207
EheI GGCGCC 1 cut(s) 207
ErhI CCWWGG 4 cut(s) 479, 525, 1373, 1478
FaqI GGGAC 3 cut(s) 341, 1429, 1437
FauI CCCGC 1 cut(s) 97
FokI GGATG 4 cut(s) 59, 326, 669, 877
FspBI CTAG 3 cut(s) 275, 590, 1289
GlaI GCGC 4 cut(s) 207, 541, 667, 1069
GsaI CCCAGC 2 cut(s) 537, 653
GsuI CTGGAG 1 cut(s) 797
HaeII RGCGCY 2 cut(s) 209, 669
HaeIII GGCC 3 cut(s) 654, 1002, 1316
HapII CCGG 3 cut(s) 209, 345, 645
HhaI GCGC 4 cut(s) 208, 542, 668, 1070
Hin1I GRCGYC 1 cut(s) 206
Hin6I GCGC 4 cut(s) 206, 540, 666, 1068
HinP1I GCGC 4 cut(s) 206, 540, 666, 1068
HinfI GANTC 1 cut(s) 19
HpaII CCGG 3 cut(s) 209, 345, 645
HphI GGTGA 3 cut(s) 1132, 1488, 1494
Hpy166II GTNNAC 2 cut(s) 719, 1349
Hpy188I TCNGA 8 cut(s) 271, 562, 642, 876, 973, 1107, 1219, 1471
Hpy188III TCNNGA 5 cut(s) 10, 64, 1097, 1289, 1336
Hpy8I GTNNAC 2 cut(s) 719, 1349
HpyAV CCTTC 8 cut(s) 43, 160, 505, 980, 1058, 1306, 1509, 1515
HpyCH4III ACNGT 4 cut(s) 872, 1135, 1444, 1515
HpyCH4IV ACGT 1 cut(s) 1390
HpyF3I CTNAG 7 cut(s) 249, 561, 594, 931, 1056, 1098, 1365
HpySE526I ACGT 1 cut(s) 1390
Hsp92I GRCGYC 1 cut(s) 206
HspAI GCGC 4 cut(s) 206, 540, 666, 1068
KasI GGCGCC 1 cut(s) 205
Kzo9I GATC 4 cut(s) 6, 973, 1285, 1338
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 7 cut(s) 448, 523, 586, 673, 729, 778, 1375
Lsp1109I GCAGC 9 cut(s) 37, 134, 232, 517, 529, 758, 761, 820, 1255
LweI GCATC 6 cut(s) 81, 209, 578, 864, 929, 1111
MaeI CTAG 3 cut(s) 275, 590, 1289
MaeII ACGT 1 cut(s) 1390
MaeIII GTNAC 4 cut(s) 574, 1147, 1453, 1494
MalI GATC 4 cut(s) 8, 975, 1287, 1340
MboI GATC 4 cut(s) 6, 973, 1285, 1338
MboII GAAGA 9 cut(s) 22, 146, 347, 608, 995, 1120, 1187, 1232, 1235
MfeI CAATTG 2 cut(s) 798, 1342
MflI RGATCY 1 cut(s) 973
MluCI AATT 9 cut(s) 798, 926, 1164, 1235, 1253, 1329, 1342, 1409, 1432
Mly113I GGCGCC 1 cut(s) 206
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 9 cut(s) 148, 589, 601, 630, 641, 779, 930, 1165, 1171
MseI TTAA 5 cut(s) 429, 444, 497, 762, 963
MslI CAYNNNNRTG 4 cut(s) 687, 1145, 1354, 1442
MspA1I CMGCKG 3 cut(s) 131, 310, 1055
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 3 cut(s) 209, 345, 645
MspR9I CCNGG 5 cut(s) 178, 210, 346, 624, 646
MunI CAATTG 2 cut(s) 798, 1342
MvaI CCWGG 2 cut(s) 178, 624
NarI GGCGCC 1 cut(s) 206
NciI CCSGG 3 cut(s) 210, 346, 646
NcoI CCATGG 1 cut(s) 479
NdeII GATC 4 cut(s) 6, 973, 1285, 1338
NheI GCTAGC 2 cut(s) 274, 589
NlaIV GGNNCC 4 cut(s) 54, 207, 450, 1371
NmuCI GTSAC 2 cut(s) 1147, 1494
NspV TTCGAA 1 cut(s) 1310
OliI CACNNNNGTG 1 cut(s) 1145
PceI AGGCCT 1 cut(s) 1316
PciSI GCTCTTC 1 cut(s) 35
PleI GAGTC 1 cut(s) 27
PluTI GGCGCC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 176, 622
PspFI CCCAGC 2 cut(s) 533, 649
PspGI CCWGG 2 cut(s) 176, 622
PspN4I GGNNCC 4 cut(s) 54, 207, 450, 1371
PspPI GGNCC 4 cut(s) 652, 843, 1001, 1187
PsuI RGATCY 1 cut(s) 973
PvuII CAGCTG 2 cut(s) 131, 1055
RsaI GTAC 3 cut(s) 359, 718, 1490
RsaNI GTAC 3 cut(s) 358, 717, 1489
RseI CAYNNNNRTG 4 cut(s) 687, 1145, 1354, 1442
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 5 cut(s) 429, 444, 497, 762, 963
Sau3AI GATC 4 cut(s) 6, 973, 1285, 1338
Sau96I GGNCC 4 cut(s) 652, 843, 1001, 1187
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 5 cut(s) 178, 210, 346, 624, 646
SfaNI GCATC 6 cut(s) 81, 209, 578, 864, 929, 1111
SfcI CTRYAG 1 cut(s) 126
SfoI GGCGCC 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 1310
SinI GGWCC 2 cut(s) 843, 1187
SmiMI CAYNNNNRTG 4 cut(s) 687, 1145, 1354, 1442
SmlI CTYRAG 4 cut(s) 62, 443, 1014, 1427
SmoI CTYRAG 4 cut(s) 62, 443, 1014, 1427
Sse9I AATT 9 cut(s) 798, 926, 1164, 1235, 1253, 1329, 1342, 1409, 1432
SseBI AGGCCT 1 cut(s) 1316
SsiI CCGC 8 cut(s) 39, 90, 119, 158, 215, 308, 846, 1083
SspDI GGCGCC 1 cut(s) 205
SspI AATATT 2 cut(s) 637, 1035
SspMI CTAG 3 cut(s) 275, 590, 1289
StuI AGGCCT 1 cut(s) 1316
StyD4I CCNGG 5 cut(s) 176, 208, 344, 622, 644
StyI CCWWGG 4 cut(s) 479, 525, 1373, 1478
TaaI ACNGT 4 cut(s) 872, 1135, 1444, 1515
TaiI ACGT 1 cut(s) 1393
TaqI TCGA 2 cut(s) 285, 1310
TasI AATT 9 cut(s) 798, 926, 1164, 1235, 1253, 1329, 1342, 1409, 1432
TatI WGTACW 2 cut(s) 357, 716
TauI GCSGC 3 cut(s) 42, 122, 161
Tru1I TTAA 5 cut(s) 429, 444, 497, 762, 963
Tru9I TTAA 5 cut(s) 429, 444, 497, 762, 963
TscAI CASTG 1 cut(s) 889
TseFI GTSAC 2 cut(s) 1147, 1494
TseI GCWGC 9 cut(s) 25, 122, 245, 530, 542, 746, 749, 833, 1268
Tsp45I GTSAC 2 cut(s) 1147, 1494
TspDTI ATGAA 6 cut(s) 22, 330, 672, 924, 1033, 1488
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 1 cut(s) 889
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 843, 1187
VspI ATTAAT 1 cut(s) 497
XapI RAATTY 2 cut(s) 926, 1164
XbaI TCTAGA 1 cut(s) 1288
XspI CTAG 3 cut(s) 275, 590, 1289
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.