Basic Information
Type: gene
Biological Identity
arabidopsis_thaliana
Physical Location & Seq
Forward (+)
18029659 .. 18030133
AT3G48660.1
Length: 270 bp
ATGGCGGATTGGGGACCTGTTGTAGTCGCTGTGATACTGTTCGTGCTTTTGACTCCGGGACTTCTCTTTCAGATTCCGGCGAGAGGTCGTGTTGTTGAATTTGGTAATATGCAGACTAGTGGAGCGTCGATTCTCGTCCACACCATCATTTTCTTCGGTCTTATAACCATCTTCACCATCGCCATTCGTCTCCATATCTATACCGGCACTAGGCAGTTAGCCTTAGTTTGGTTTATTGGTATTCGAGTTCAAATTGGAATTGAGTACTAA
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Protein Analysis
9.96
Isoelectric Point (pI)
| Domain Name |
Pfam ID |
Position |
E-value |
Description |
| DUF3339 |
PF11820 |
1 - 67 |
2.4e-35 |
Protein of unknown function (DUF3339) |
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...
Gene Family Tree
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Publication-ready
Orthologous Genes
(Group: OG0019129)
Restriction Enzyme Sites
| Enzyme |
Recognition Site |
Cut Count |
Positions (bp) |
| AanI |
TTATAA |
1 cut(s)
|
164 |
| AciI |
CCGC |
1 cut(s)
|
5 |
| AcsI |
RAATTY |
1 cut(s)
|
98 |
| AfaI |
GTAC |
1 cut(s)
|
266 |
| AfiI |
CCNNNNNNNGG |
3 cut(s)
|
83, 210, 228 |
| AgsI |
TTSAA |
2 cut(s)
|
98, 251 |
| AhlI |
ACTAGT |
1 cut(s)
|
116 |
| Alw26I |
GTCTC |
1 cut(s)
|
194 |
| ApoI |
RAATTY |
1 cut(s)
|
98 |
| AspS9I |
GGNCC |
1 cut(s)
|
14 |
| AsuC2I |
CCSGG |
1 cut(s)
|
57 |
| AsuHPI |
GGTGA |
1 cut(s)
|
166 |
| AvaII |
GGWCC |
1 cut(s)
|
14 |
| BccI |
CCATC |
3 cut(s)
|
152, 176, 185 |
| BcnI |
CCSGG |
1 cut(s)
|
57 |
| BcoDI |
GTCTC |
1 cut(s)
|
194 |
| BcuI |
ACTAGT |
1 cut(s)
|
116 |
| BfaI |
CTAG |
2 cut(s)
|
117, 210 |
| BmcAI |
AGTACT |
1 cut(s)
|
266 |
| Bme1390I |
CCNGG |
1 cut(s)
|
57 |
| Bme18I |
GGWCC |
1 cut(s)
|
14 |
| BmgT120I |
GGNCC |
1 cut(s)
|
14 |
| BmiI |
GGNNCC |
1 cut(s)
|
15 |
| BmrFI |
CCNGG |
1 cut(s)
|
57 |
| BpuMI |
CCSGG |
1 cut(s)
|
57 |
| Bsc4I |
CCNNNNNNNGG |
3 cut(s)
|
83, 210, 228 |
| Bse118I |
RCCGGY |
1 cut(s)
|
203 |
| BseLI |
CCNNNNNNNGG |
3 cut(s)
|
83, 210, 228 |
| BsiSI |
CCGG |
3 cut(s)
|
56, 77, 204 |
| BslFI |
GGGAC |
2 cut(s)
|
27, 72 |
| BslI |
CCNNNNNNNGG |
3 cut(s)
|
83, 210, 228 |
| BsmAI |
GTCTC |
1 cut(s)
|
194 |
| BsmBI |
CGTCTC |
1 cut(s)
|
194 |
| BsmFI |
GGGAC |
2 cut(s)
|
27, 72 |
| BspACI |
CCGC |
1 cut(s)
|
5 |
| BspLI |
GGNNCC |
1 cut(s)
|
15 |
| BsrFI |
RCCGGY |
1 cut(s)
|
203 |
| BssAI |
RCCGGY |
1 cut(s)
|
203 |
| Bst4CI |
ACNGT |
1 cut(s)
|
39 |
| BstDEI |
CTNAG |
1 cut(s)
|
223 |
| BstMAI |
GTCTC |
1 cut(s)
|
194 |
| BstSCI |
CCNGG |
1 cut(s)
|
55 |
| BtgZI |
GCGATG |
1 cut(s)
|
163 |
| Cfr10I |
RCCGGY |
1 cut(s)
|
203 |
| Cfr13I |
GGNCC |
1 cut(s)
|
14 |
| CseI |
GACGC |
1 cut(s)
|
114 |
| Csp6I |
GTAC |
1 cut(s)
|
265 |
| CviJI |
RGCY |
1 cut(s)
|
221 |
| CviKI_1 |
RGCY |
1 cut(s)
|
221 |
| CviQI |
GTAC |
1 cut(s)
|
265 |
| DdeI |
CTNAG |
1 cut(s)
|
223 |
| EciI |
GGCGGA |
1 cut(s)
|
20 |
| Eco47I |
GGWCC |
1 cut(s)
|
14 |
| EcoO109I |
RGGNCCY |
1 cut(s)
|
14 |
| Esp3I |
CGTCTC |
1 cut(s)
|
194 |
| FaiI |
YATR |
4 cut(s)
|
110, 164, 195, 201 |
| FaqI |
GGGAC |
2 cut(s)
|
27, 72 |
| FspBI |
CTAG |
2 cut(s)
|
117, 210 |
| HapII |
CCGG |
3 cut(s)
|
56, 77, 204 |
| HgaI |
GACGC |
1 cut(s)
|
114 |
| HinfI |
GANTC |
3 cut(s)
|
52, 73, 130 |
| HpaII |
CCGG |
3 cut(s)
|
56, 77, 204 |
| HphI |
GGTGA |
1 cut(s)
|
166 |
| Hpy166II |
GTNNAC |
1 cut(s)
|
139 |
| Hpy188I |
TCNGA |
1 cut(s)
|
72 |
| Hpy8I |
GTNNAC |
1 cut(s)
|
139 |
| Hpy99I |
CGWCG |
1 cut(s)
|
130 |
| HpyCH4III |
ACNGT |
1 cut(s)
|
39 |
| HpyCH4V |
TGCA |
1 cut(s)
|
112 |
| HpyF3I |
CTNAG |
1 cut(s)
|
223 |
| LmnI |
GCTCC |
1 cut(s)
|
122 |
| LpnPI |
CCDG |
4 cut(s)
|
30, 69, 90, 217 |
| MaeI |
CTAG |
2 cut(s)
|
117, 210 |
| MboII |
GAAGA |
2 cut(s)
|
145, 163 |
| MluCI |
AATT |
3 cut(s)
|
98, 252, 258 |
| MlyI |
GAGTC |
1 cut(s)
|
46 |
| MnlI |
CCTC |
1 cut(s)
|
77 |
| MspI |
CCGG |
3 cut(s)
|
56, 77, 204 |
| MspR9I |
CCNGG |
1 cut(s)
|
57 |
| NciI |
CCSGG |
1 cut(s)
|
57 |
| NlaIV |
GGNNCC |
1 cut(s)
|
15 |
| PfeI |
GAWTC |
2 cut(s)
|
73, 130 |
| PfoI |
TCCNGGA |
1 cut(s)
|
55 |
| PleI |
GAGTC |
1 cut(s)
|
46 |
| PpsI |
GAGTC |
1 cut(s)
|
46 |
| PpuMI |
RGGWCCY |
1 cut(s)
|
14 |
| PsiI |
TTATAA |
1 cut(s)
|
164 |
| Psp5II |
RGGWCCY |
1 cut(s)
|
14 |
| PspN4I |
GGNNCC |
1 cut(s)
|
15 |
| PspPI |
GGNCC |
1 cut(s)
|
14 |
| PspPPI |
RGGWCCY |
1 cut(s)
|
14 |
| RsaI |
GTAC |
1 cut(s)
|
266 |
| RsaNI |
GTAC |
1 cut(s)
|
265 |
| Sau96I |
GGNCC |
1 cut(s)
|
14 |
| ScaI |
AGTACT |
1 cut(s)
|
266 |
| SchI |
GAGTC |
1 cut(s)
|
46 |
| ScrFI |
CCNGG |
1 cut(s)
|
57 |
| SetI |
ASST |
2 cut(s)
|
19, 88 |
| SinI |
GGWCC |
1 cut(s)
|
14 |
| SpeI |
ACTAGT |
1 cut(s)
|
116 |
| Sse9I |
AATT |
3 cut(s)
|
98, 252, 258 |
| SsiI |
CCGC |
1 cut(s)
|
5 |
| SspMI |
CTAG |
2 cut(s)
|
117, 210 |
| StyD4I |
CCNGG |
1 cut(s)
|
55 |
| TaaI |
ACNGT |
1 cut(s)
|
39 |
| TaqI |
TCGA |
2 cut(s)
|
128, 244 |
| TaqII |
GACCGA |
1 cut(s)
|
146 |
| TasI |
AATT |
3 cut(s)
|
98, 252, 258 |
| TatI |
WGTACW |
1 cut(s)
|
264 |
| TfiI |
GAWTC |
2 cut(s)
|
73, 130 |
| VpaK11BI |
GGWCC |
1 cut(s)
|
14 |
| XapI |
RAATTY |
1 cut(s)
|
98 |
| XspI |
CTAG |
2 cut(s)
|
117, 210 |
| ZrmI |
AGTACT |
1 cut(s)
|
266 |
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.