Rw7G009180

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0019129
Physical Location & Seq
Reverse (-)
8663360 .. 8663569
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009180.1

Sequence Viewer

Length: 210 bp
ATGGCGGATTGGGGCCCGGTGATCGTAGCGGTGGTGTTGTTTGTGCTGTTGACTCCAGGGCTTTTGTTTCAGATACCGGGAAGGGGGAGGGTGGTGGAGTTTGGGAACATGCAGACCAGTGGTGCCTCCATTGTCGTACATGCCATCATCTACTTTGGGCTTCTCACCATCTTCCTTATCGCCATCGGTGTTCATATCTATGCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

69

Amino Acids

7.35

Weight (kDa)

6.69

Isoelectric Point (pI)

13.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 4.8e-37 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48660 AT5G63500
malus_domestica MD06G1140200.v1.1
prunus_persica Prupe.5G149500_v2.0.a1
pyrus_communis pycom06g13050 pycom14g12930
rosa_rugosa Rorug06G0500800
rosa_wichuraiana Rw7G009180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AciI CCGC 2 cut(s) 5, 29
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 83
AjnI CCWGG 1 cut(s) 55
AoxI GGCC 1 cut(s) 13
ApaI GGGCCC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 13, 14
AsuC2I CCSGG 2 cut(s) 17, 78
AsuHPI GGTGA 2 cut(s) 31, 157
BaeGI GKGCMC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 17
BccI CCATC 3 cut(s) 152, 176, 191
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 2 cut(s) 17, 78
Bme1390I CCNGG 3 cut(s) 17, 57, 78
BmgT120I GGNCC 2 cut(s) 13, 14
BmiI GGNNCC 3 cut(s) 14, 15, 124
BmrFI CCNGG 3 cut(s) 17, 57, 78
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 17, 78
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 17
BshFI GGCC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 3 cut(s) 17, 77, 204
BslI CCNNNNNNNGG 1 cut(s) 83
BsnI GGCC 1 cut(s) 15
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 2 cut(s) 5, 29
BspANI GGCC 1 cut(s) 15
BspLI GGNNCC 3 cut(s) 14, 15, 124
BspT107I GGYRCC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 57
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 112, 143
BstSCI CCNGG 3 cut(s) 15, 55, 76
BstSLI GKGCMC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 13, 14
Csp6I GTAC 1 cut(s) 137
CviAII CATG 2 cut(s) 109, 140
CviJI RGCY 3 cut(s) 15, 61, 160
CviKI_1 RGCY 3 cut(s) 15, 61, 160
CviQI GTAC 1 cut(s) 137
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 17
FaeI CATG 2 cut(s) 112, 143
FaiI YATR 4 cut(s) 110, 141, 195, 201
FatI CATG 2 cut(s) 108, 139
FriOI GRGCYC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 15
HapII CCGG 3 cut(s) 17, 77, 204
Hin1II CATG 2 cut(s) 112, 143
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 1 cut(s) 52
HpaII CCGG 3 cut(s) 17, 77, 204
HphI GGTGA 2 cut(s) 31, 157
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 2 cut(s) 112, 143
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 5 cut(s) 30, 42, 69, 90, 130
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 17
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 2 cut(s) 81, 136
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 3 cut(s) 17, 77, 204
MspR9I CCNGG 3 cut(s) 17, 57, 78
MvaI CCWGG 1 cut(s) 57
NciI CCSGG 2 cut(s) 17, 78
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 112, 143
NlaIV GGNNCC 3 cut(s) 14, 15, 124
NspI RCATGY 2 cut(s) 112, 143
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 14, 15, 124
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 13, 14
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 198
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 2 cut(s) 13, 14
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 17, 57, 78
SduI GDGCHC 1 cut(s) 17
SgeI CNNG 9 cut(s) 28, 29, 68, 69, 89, 90, 121, 129, 152
SmiMI CAYNNNNRTG 1 cut(s) 198
SsiI CCGC 2 cut(s) 5, 29
StyD4I CCNGG 3 cut(s) 15, 55, 76
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 1 cut(s) 124
XceI RCATGY 2 cut(s) 112, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.