MD06G1140200.v1.1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0019129
Physical Location & Seq
Reverse (-)
28431915 .. 28432124
210 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1140200.v1.1.491

Sequence Viewer

Length: 210 bp
ATGGCAGACTGGGGTCCGGTGGTGATTGCGGTGGTGCTGTTTGTGCTATTGACACCGGGGCTTTTGTTTCAGATACCCGGACGTGGGAGGTTGGTGGAGTTCGGGAACATGCAGACCAGCGGCGCTTCCATCGTGGTGCACGCCATCATCTACTTTGGCCTCCTCACCATCTTCCTTATTGCCATTGGAGTTCACATCTATGCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

70

Amino Acids

7.37

Weight (kDa)

6.69

Isoelectric Point (pI)

15.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 5.1e-37 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48660 AT5G63500
malus_domestica MD06G1140200.v1.1
prunus_persica Prupe.5G149500_v2.0.a1
pyrus_communis pycom06g13050 pycom14g12930
rosa_rugosa Rorug06G0500800
rosa_wichuraiana Rw7G009180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 120
AfiI CCNNNNNNNGG 2 cut(s) 83, 84
AjiI CACGTC 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 137
AoxI GGCC 1 cut(s) 157
ApaLI GTGCAC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 57, 78
AsuHPI GGTGA 2 cut(s) 34, 157
AvaII GGWCC 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 3 cut(s) 137, 152, 176
BcnI CCSGG 2 cut(s) 57, 78
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 57, 78
Bme18I GGWCC 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 57, 78
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
BoxI GACNNNNGTC 1 cut(s) 12
BpuMI CCSGG 2 cut(s) 57, 78
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 84
Bse1I ACTGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 56
BseLI CCNNNNNNNGG 2 cut(s) 83, 84
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 141
BshFI GGCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 3 cut(s) 17, 56, 78
BslI CCNNNNNNNGG 2 cut(s) 83, 84
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 141
BspACI CCGC 2 cut(s) 29, 120
BspANI GGCC 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 112
BstPAI GACNNNNGTC 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 55, 76
BstSLI GKGCMC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 159
BtrI CACGTC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 14
CviAII CATG 1 cut(s) 109
CviJI RGCY 2 cut(s) 61, 159
CviKI_1 RGCY 2 cut(s) 61, 159
Eco47I GGWCC 1 cut(s) 14
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 110, 201
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 159
HapII CCGG 3 cut(s) 17, 56, 78
HhaI GCGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HpaII CCGG 3 cut(s) 17, 56, 78
HphI GGTGA 2 cut(s) 34, 157
Hpy166II GTNNAC 2 cut(s) 139, 193
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 139, 193
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 112, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 123
LpnPI CCDG 5 cut(s) 30, 69, 91, 130, 189
MaeII ACGT 1 cut(s) 82
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 141
MnlI CCTC 3 cut(s) 81, 170, 173
MseI TTAA 1 cut(s) 208
MslI CAYNNNNRTG 2 cut(s) 134, 198
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 3 cut(s) 17, 56, 78
MspR9I CCNGG 2 cut(s) 57, 78
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 57, 78
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 1 cut(s) 112
PkrI GCNGC 1 cut(s) 122
PshAI GACNNNNGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 134, 198
SaqAI TTAA 1 cut(s) 208
SatI GCNGC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 57, 78
SduI GDGCHC 1 cut(s) 141
SetI ASST 2 cut(s) 85, 92
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 2 cut(s) 134, 198
SsiI CCGC 2 cut(s) 29, 120
StyD4I CCNGG 2 cut(s) 55, 76
TaiI ACGT 1 cut(s) 85
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 208
Tru9I TTAA 1 cut(s) 208
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 14
XceI RCATGY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.