AT3G48860

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18117237 .. 18122812
5576 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48860.3

Sequence Viewer

Length: 1485 bp
ATGGATCGGAGGAGGGCGGGTAGCCCAGTGTATGGTCGCCAGTGGAGCGAATCATCGAACAGTACGGAGGCAACATCACCGGCGATGTCTCCTGCTCACCGGAAACAGCTCGGTGGTATCGGAGGTTTCTCCACCGTTAAACGGACTCAGAACGTAGCTGCCAAAGCCGCGGCACAGCGATTAGCTAAGGTCATGGCCTTACAGAACAAAGACAACGGAGACGAAGATGATGAAGATGAAGATGAAGATCTAAGTCTCAGATTCGCATCTGCTTCTTTAAAACCTGCTCGTCATGCACCTTCTTCTATCTCCTCCACCGGAAGCAATAGCAGCAACGGAAATAATAATTTGCCGGCTGTTTCATTTGCTCCCCGAACTAGATCGCCGTCTCCTGCGTTAGGCAGGAACTTCGCCGAGCAAGTACCTTCTTCAGTGCGGTCTGCTTCAGCCGGAAGGCCGTCAATGTCTGCTAGATCTACGACTCCGACTCCGATTCCTAATCTAATGCCGCCTAGTAGGGTGTCGGTGAAAACTCCGGTTTCTATTCCTCCACTTGATCCTCCAACTCGGAGCAGAGATAAAAGGTTCTTTGCTGATGTACCATCAGTAAATTCAAAAGAAAAGGGTGATCAGCGGGAAGCTTCAGCTCTTCGTGATGAACTGGATATGCTACAAGAGGAGAATGAGAATGTACTGGAGAAGCTTCGTCGTGCGGAAGAAAAAAGGGTGGAAGCAGAAGCTAGGGCTAAGGAGCTCGAGAAACAGGTTGCCTCTCTTGGAGAAGGAGTTTCCTTGGAGGCGAAATTGTTAAGCAGGAAAGAAGCAGCATTGCGTCAAAGAGAGGCTGCTCTAAATGTTGCTAAACAAAAAAAGAGTGGAAAGGATGAGGAAATTGTTTCCCTACGTTCGGAGCTTGAGAACTTGAAAGATGAGGCTACAACTGCTGCAGAACGGCTTCAAGAAGCAGAGTCTGAAGCGAAGTCTCTTCGCACAATGACTCAGAGGATGATTTTAACACAGGATGAAATGGAAGAAGTAGTTCTGAAGAGATGCTGGCTTGCTCGGTATTGGGGCTTGGCTGTGCAACATGGCATTTGTGCGGATATAGCACCATCCAGGCAAGAGCACTGGTCAAAGTTGGCTCCTCTTCCATTTGAGCTCGTCACTTCAGCAGCACAGAAGGCGAAGGAGTTATCTTGGGATAAAGGTGGGAATGATCGGAGTAAGGCGGCTAGAGATTTGAGTGATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTAGCATCATTAAAGGTGGAGGATGCTGTTGTGCTTATATTCGCCCAGCAGAGAAAGTTGAGTTTGGTTCGCCACACTGTTTCCGACTCCAAAGGTCATGGAGAATCCAGATTTATCGATGCATATGGTAACGGAAAAGTCTCACTAACTCTTTTCTCTTTGTTTTCCACCCTTATGTAG

Protein Analysis

494

Amino Acids

54.09

Weight (kDa)

8.63

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccB7I CCANNNNNTGG 1 cut(s) 32
AccII CGCG 1 cut(s) 170
AciI CCGC 9 cut(s) 17, 168, 170, 436, 509, 634, 713, 1100, 1229
AclWI GGATC 2 cut(s) 12, 551
AcsI RAATTY 1 cut(s) 610
AcuI CTGAAG 6 cut(s) 414, 429, 627, 993, 1064, 1152
AfaI GTAC 4 cut(s) 64, 423, 600, 693
AfiI CCNNNNNNNGG 4 cut(s) 32, 141, 398, 907
AgsI TTSAA 4 cut(s) 615, 925, 959, 1271
AjnI CCWGG 1 cut(s) 1115
Alw21I GWGCWC 3 cut(s) 756, 1128, 1161
Alw26I GTCTC 6 cut(s) 93, 213, 260, 393, 987, 1450
AlwI GGATC 2 cut(s) 12, 551
AlwNI CAGNNNCTG 1 cut(s) 971
Ama87I CYCGRG 1 cut(s) 755
AoxI GGCC 2 cut(s) 195, 455
ApeKI GCWGC 6 cut(s) 158, 330, 824, 845, 944, 1172
ApoI RAATTY 1 cut(s) 610
Asp700I GAANNNNTTC 2 cut(s) 954, 1038
AsuHPI GGTGA 4 cut(s) 69, 89, 538, 638
AsuNHI GCTAGC 1 cut(s) 1306
AvaI CYCGRG 1 cut(s) 755
BanII GRGCYC 2 cut(s) 756, 1161
Bbv12I GWGCWC 3 cut(s) 756, 1128, 1161
BbvI GCAGC 6 cut(s) 145, 342, 832, 836, 931, 1184
BccI CCATC 3 cut(s) 610, 1120, 1285
BceAI ACGGC 3 cut(s) 370, 442, 968
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 1 cut(s) 1117
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 6 cut(s) 93, 213, 260, 393, 987, 1450
BfaI CTAG 6 cut(s) 378, 471, 513, 741, 1233, 1307
BfmI CTRYAG 1 cut(s) 945
BfuAI ACCTGC 1 cut(s) 292
BglII AGATCT 2 cut(s) 247, 473
Bme1390I CCNGG 1 cut(s) 1117
BmeT110I CYCGRG 1 cut(s) 755
BmiI GGNNCC 1 cut(s) 1143
BmrFI CCNGG 1 cut(s) 1117
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 5 cut(s) 275, 1040, 1318, 1319, 1414
BmtI GCTAGC 1 cut(s) 1310
BmuI ACTGGG 1 cut(s) 20
BpmI CTGGAG 2 cut(s) 716, 1275
Bpu10I CCTNAGC 2 cut(s) 186, 747
BpuEI CTTGAG 1 cut(s) 935
Bsa29I ATCGAT 1 cut(s) 1422
BsaBI GATNNNNATC 2 cut(s) 246, 265
BsaJI CCNNGG 2 cut(s) 168, 792
BsaWI WCCGGW 3 cut(s) 99, 317, 535
BsaXI ACNNNNNCTCC 5 cut(s) 34, 472, 502, 771, 801
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 141, 398, 907
Bse118I RCCGGY 2 cut(s) 79, 352
Bse1I ACTGG 6 cut(s) 26, 40, 666, 699, 1133, 1258
Bse3DI GCAATG 1 cut(s) 827
Bse8I GATNNNNATC 2 cut(s) 246, 265
BseBI CCWGG 1 cut(s) 1117
BseCI ATCGAT 1 cut(s) 1422
BseDI CCNNGG 2 cut(s) 168, 792
BseGI GGATG 5 cut(s) 889, 1011, 1027, 1112, 1333
BseJI GATNNNNATC 2 cut(s) 246, 265
BseLI CCNNNNNNNGG 4 cut(s) 32, 141, 398, 907
BseMI GCAATG 1 cut(s) 827
BseMII CTCAG 3 cut(s) 161, 271, 1013
BseNI ACTGG 6 cut(s) 26, 40, 666, 699, 1133, 1258
BseRI GAGGAG 4 cut(s) 25, 301, 692, 1134
BseXI GCAGC 6 cut(s) 145, 342, 832, 836, 931, 1184
BseYI CCCAGC 1 cut(s) 1350
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 2 cut(s) 197, 457
BshVI ATCGAT 1 cut(s) 1422
BsiHKAI GWGCWC 3 cut(s) 756, 1128, 1161
BsiHKCI CYCGRG 1 cut(s) 755
BsiSI CCGG 6 cut(s) 80, 100, 318, 353, 450, 536
BslI CCNNNNNNNGG 4 cut(s) 32, 141, 398, 907
BsmAI GTCTC 6 cut(s) 93, 213, 260, 393, 987, 1450
BsmBI CGTCTC 2 cut(s) 213, 393
BsnI GGCC 2 cut(s) 197, 457
BsoBI CYCGRG 1 cut(s) 755
Bsp1286I GDGCHC 3 cut(s) 756, 1128, 1161
Bsp143I GATC 8 cut(s) 4, 247, 380, 473, 556, 628, 1216, 1246
BspACI CCGC 9 cut(s) 17, 168, 170, 436, 509, 634, 713, 1100, 1229
BspANI GGCC 2 cut(s) 197, 457
BspCNI CTCAG 3 cut(s) 160, 270, 1012
BspDI ATCGAT 1 cut(s) 1422
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 1143
BspMAI CTGCAG 1 cut(s) 949
BspMI ACCTGC 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 1310
BspPI GGATC 2 cut(s) 12, 551
BspQI GCTCTTC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 827
BsrFI RCCGGY 2 cut(s) 79, 352
BsrI ACTGG 6 cut(s) 26, 40, 666, 699, 1133, 1258
BssAI RCCGGY 2 cut(s) 79, 352
BssECI CCNNGG 2 cut(s) 168, 792
BssMI GATC 8 cut(s) 4, 247, 380, 473, 556, 628, 1216, 1246
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 1117
Bst4CI ACNGT 3 cut(s) 62, 136, 1384
Bst6I CTCTTC 4 cut(s) 654, 990, 1040, 1152
BstC8I GCNNGC 4 cut(s) 354, 1055, 1059, 1308
BstDEI CTNAG 6 cut(s) 147, 186, 251, 257, 747, 999
BstDSI CCRYGG 1 cut(s) 168
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 5 cut(s) 889, 1011, 1027, 1112, 1333
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 8 cut(s) 7, 250, 383, 476, 559, 631, 1219, 1249
BstMAI GTCTC 6 cut(s) 93, 213, 260, 393, 987, 1450
BstMBI GATC 8 cut(s) 4, 247, 380, 473, 556, 628, 1216, 1246
BstMWI GCNNNNNNNGC 8 cut(s) 45, 164, 167, 293, 330, 941, 1106, 1181
BstNI CCWGG 1 cut(s) 1117
BstSCI CCNGG 1 cut(s) 1115
BstSFI CTRYAG 1 cut(s) 945
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 6 cut(s) 145, 342, 832, 836, 931, 1184
BstX2I RGATCY 2 cut(s) 247, 473
BstYI RGATCY 2 cut(s) 247, 473
Bsu15I ATCGAT 1 cut(s) 1422
BsuRI GGCC 2 cut(s) 197, 457
BsuTUI ATCGAT 1 cut(s) 1422
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 5 cut(s) 889, 1011, 1027, 1112, 1333
BtsIMutI CAGTG 5 cut(s) 33, 47, 438, 1126, 1380
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 4 cut(s) 354, 1055, 1059, 1308
CaiI CAGNNNCTG 1 cut(s) 971
Cfr10I RCCGGY 2 cut(s) 79, 352
Cfr42I CCGCGG 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 1422
CseI GACGC 1 cut(s) 821
Csp6I GTAC 4 cut(s) 63, 422, 599, 692
CviAII CATG 4 cut(s) 193, 293, 1088, 1403
CviQI GTAC 4 cut(s) 63, 422, 599, 692
DdeI CTNAG 6 cut(s) 147, 186, 251, 257, 747, 999
DpnI GATC 8 cut(s) 6, 249, 382, 475, 558, 630, 1218, 1248
DpnII GATC 8 cut(s) 4, 247, 380, 473, 556, 628, 1216, 1246
DraI TTTAAA 1 cut(s) 279
Eam1104I CTCTTC 4 cut(s) 654, 990, 1040, 1152
EarI CTCTTC 4 cut(s) 654, 990, 1040, 1152
Ecl136II GAGCTC 2 cut(s) 754, 1159
Eco130I CCWWGG 1 cut(s) 792
Eco24I GRGCYC 2 cut(s) 756, 1161
Eco53kI GAGCTC 2 cut(s) 754, 1159
Eco57I CTGAAG 6 cut(s) 414, 429, 627, 993, 1064, 1152
Eco88I CYCGRG 1 cut(s) 755
EcoICRI GAGCTC 2 cut(s) 754, 1159
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 1115
EcoT14I CCWWGG 1 cut(s) 792
EcoT22I ATGCAT 1 cut(s) 1429
EcoT38I GRGCYC 2 cut(s) 756, 1161
ErhI CCWWGG 1 cut(s) 792
Esp3I CGTCTC 2 cut(s) 213, 393
FaeI CATG 4 cut(s) 196, 296, 1091, 1406
FatI CATG 4 cut(s) 192, 292, 1087, 1402
FauI CCCGC 2 cut(s) 10, 627
FauNDI CATATG 1 cut(s) 1429
FbaI TGATCA 1 cut(s) 628
FokI GGATG 5 cut(s) 896, 1018, 1034, 1099, 1340
FriOI GRGCYC 2 cut(s) 756, 1161
FspBI CTAG 6 cut(s) 378, 471, 513, 741, 1233, 1307
GsaI CCCAGC 1 cut(s) 1354
GsuI CTGGAG 2 cut(s) 716, 1275
HaeIII GGCC 2 cut(s) 197, 457
HapII CCGG 6 cut(s) 80, 100, 318, 353, 450, 536
HgaI GACGC 1 cut(s) 821
Hin1II CATG 4 cut(s) 196, 296, 1091, 1406
HindIII AAGCTT 2 cut(s) 639, 701
HpaII CCGG 6 cut(s) 80, 100, 318, 353, 450, 536
HphI GGTGA 4 cut(s) 69, 89, 538, 638
Hpy188III TCNNGA 4 cut(s) 653, 757, 959, 1413
Hpy99I CGWCG 1 cut(s) 711
HpyAV CCTTC 7 cut(s) 309, 435, 447, 776, 1174, 1180, 1253
HpyCH4III ACNGT 3 cut(s) 62, 136, 1384
HpyCH4IV ACGT 2 cut(s) 153, 904
HpyCH4V TGCA 4 cut(s) 296, 947, 1084, 1427
HpyF10VI GCNNNNNNNGC 8 cut(s) 45, 164, 167, 293, 330, 941, 1106, 1181
HpyF3I CTNAG 6 cut(s) 147, 186, 251, 257, 747, 999
HpySE526I ACGT 2 cut(s) 153, 904
Hsp92II CATG 4 cut(s) 196, 296, 1091, 1406
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 628
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 8 cut(s) 4, 247, 380, 473, 556, 628, 1216, 1246
LguI GCTCTTC 1 cut(s) 654
LmnI GCTCC 6 cut(s) 45, 373, 570, 751, 910, 1147
Lsp1109I GCAGC 6 cut(s) 145, 342, 832, 836, 931, 1184
LweI GCATC 5 cut(s) 275, 1040, 1318, 1319, 1414
MaeI CTAG 6 cut(s) 378, 471, 513, 741, 1233, 1307
MaeII ACGT 2 cut(s) 153, 904
MaeIII GTNAC 2 cut(s) 1162, 1433
MalI GATC 8 cut(s) 6, 249, 382, 475, 558, 630, 1218, 1248
MboI GATC 8 cut(s) 4, 247, 380, 473, 556, 628, 1216, 1246
MflI RGATCY 2 cut(s) 247, 473
MhlI GDGCHC 3 cut(s) 756, 1128, 1161
MluCI AATT 4 cut(s) 346, 610, 803, 891
MlyI GAGTC 6 cut(s) 139, 475, 481, 977, 991, 1385
MmeI TCCRAC 3 cut(s) 509, 587, 1413
Mph1103I ATGCAT 1 cut(s) 1429
MroNI GCCGGC 1 cut(s) 352
MroXI GAANNNNTTC 2 cut(s) 954, 1038
MseI TTAA 5 cut(s) 138, 278, 809, 1013, 1316
MslI CAYNNNNRTG 1 cut(s) 1478
MspA1I CMGCKG 2 cut(s) 170, 634
MspI CCGG 6 cut(s) 80, 100, 318, 353, 450, 536
MspR9I CCNGG 1 cut(s) 1117
MvaI CCWGG 1 cut(s) 1117
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 8 cut(s) 45, 164, 167, 293, 330, 941, 1106, 1181
NaeI GCCGGC 1 cut(s) 354
NdeI CATATG 1 cut(s) 1429
NdeII GATC 8 cut(s) 4, 247, 380, 473, 556, 628, 1216, 1246
NgoMIV GCCGGC 1 cut(s) 352
NheI GCTAGC 1 cut(s) 1306
NlaIII CATG 4 cut(s) 196, 296, 1091, 1406
NlaIV GGNNCC 1 cut(s) 1143
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 1162
NsiI ATGCAT 1 cut(s) 1429
PaeR7I CTCGAG 1 cut(s) 755
PciSI GCTCTTC 1 cut(s) 654
PdiI GCCGGC 1 cut(s) 354
PdmI GAANNNNTTC 2 cut(s) 954, 1038
PfeI GAWTC 4 cut(s) 50, 261, 493, 1409
PflMI CCANNNNNTGG 1 cut(s) 32
PleI GAGTC 6 cut(s) 139, 475, 481, 976, 991, 1385
PpsI GAGTC 6 cut(s) 139, 475, 481, 976, 991, 1385
Psp124BI GAGCTC 2 cut(s) 756, 1161
Psp6I CCWGG 1 cut(s) 1115
PspFI CCCAGC 1 cut(s) 1350
PspGI CCWGG 1 cut(s) 1115
PspN4I GGNNCC 1 cut(s) 1143
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 1 cut(s) 971
PsuI RGATCY 2 cut(s) 247, 473
RsaI GTAC 4 cut(s) 64, 423, 600, 693
RsaNI GTAC 4 cut(s) 63, 422, 599, 692
RseI CAYNNNNRTG 1 cut(s) 1478
SacI GAGCTC 2 cut(s) 756, 1161
SacII CCGCGG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 654
SaqAI TTAA 5 cut(s) 138, 278, 809, 1013, 1316
Sau3AI GATC 8 cut(s) 4, 247, 380, 473, 556, 628, 1216, 1246
SchI GAGTC 6 cut(s) 139, 475, 481, 977, 991, 1385
ScrFI CCNGG 1 cut(s) 1117
SduI GDGCHC 3 cut(s) 756, 1128, 1161
SfaNI GCATC 5 cut(s) 275, 1040, 1318, 1319, 1414
SfcI CTRYAG 1 cut(s) 945
Sfr274I CTCGAG 1 cut(s) 755
Sfr303I CCGCGG 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 79
SgrBI CCGCGG 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 755
SmiMI CAYNNNNRTG 1 cut(s) 1478
SmlI CTYRAG 2 cut(s) 755, 914
SmoI CTYRAG 2 cut(s) 755, 914
Sse9I AATT 4 cut(s) 346, 610, 803, 891
SsiI CCGC 9 cut(s) 17, 168, 170, 436, 509, 634, 713, 1100, 1229
SspI AATATT 1 cut(s) 1267
SspMI CTAG 6 cut(s) 378, 471, 513, 741, 1233, 1307
SstI GAGCTC 2 cut(s) 756, 1161
StyD4I CCNGG 1 cut(s) 1115
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 62, 136, 1384
TaiI ACGT 2 cut(s) 156, 907
TaqI TCGA 3 cut(s) 56, 756, 1422
TasI AATT 4 cut(s) 346, 610, 803, 891
TatI WGTACW 1 cut(s) 691
TauI GCSGC 4 cut(s) 170, 173, 511, 1232
TfiI GAWTC 4 cut(s) 50, 261, 493, 1409
Tru1I TTAA 5 cut(s) 138, 278, 809, 1013, 1316
Tru9I TTAA 5 cut(s) 138, 278, 809, 1013, 1316
TscAI CASTG 5 cut(s) 33, 47, 438, 1133, 1387
TseFI GTSAC 1 cut(s) 1162
TseI GCWGC 6 cut(s) 158, 330, 824, 845, 944, 1172
Tsp45I GTSAC 1 cut(s) 1162
TspDTI ATGAA 6 cut(s) 246, 252, 258, 351, 672, 1038
TspGWI ACGGA 5 cut(s) 80, 157, 231, 351, 1452
TspRI CASTG 5 cut(s) 33, 47, 438, 1133, 1387
Van91I CCANNNNNTGG 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 396
XapI RAATTY 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 755
XmnI GAANNNNTTC 2 cut(s) 954, 1038
XspI CTAG 6 cut(s) 378, 471, 513, 741, 1233, 1307
Zsp2I ATGCAT 1 cut(s) 1429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.