MD06G1132600.v1.1

isoform X1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
27674920 .. 27679972
5053 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1132600.v1.1.491

Sequence Viewer

Length: 1677 bp
ATGGATCGGAGGAGACAAGCGAGTCCGGTGTACTCGCGGCAGTGGAGCGGAGGCTCGAGCAGCACAGGCTCTTCGCCGGCGATGTCGCCAGCGCACCCTCAGTCCCGGCTCAATCCGTCGGCCACCGGAATCTCCACCATCAAGCGAAATCAAAACTTCGCCGCTAAAGCCGCCGCTCAACGGCTAGCTCAGGTCATGGCTTCTCAGTCCACCGGCGATGACGAGGACGACGACGATGATCTCGGTTTCCGATTCGCTCAGCCGCCTCATGCACCGTCTTCTTTGTCCGGAAATGGTTTTACTAACGGCGCAAAGCCTCTCCCGGCGATTTCGGTGACTCGGCCTAATAGATCTCCCTCGCCTGCGTTAGGTCGGAACTTTGTAGAGCATACAACATCGGTTCGCTCCTCATCAACGGGGAGGCCCTCTATGTCAGTTCGTTCAGCGGCGGTAGTGCCACCACCGAGCAAACCATCGCTTAGAACTCCAGTAACCATACCTCCAATTGATCCTCCTTCTAATAGGAATAGAGATAAAAGGGACAGGTTTACACCAGATATTGGACAGTTCAAAGCAAAGGCCCCAGGAGATGAGCGTGAAGCTTCTGCGCTTCGTGATGAACTTGATATGCTACAAGAAGATAATGAGATTATACTTCAGAAGCTTCGCCTTGCTGAAGAAAAACATGCGCAAGCAGAGGCCAGAGCTAAGGAGCTTGAGAAACAGGTTGCTAATCTGGGGGAAGGTGTAAGCATGGAAGCCAAATTGTTGAGCAGGAAGGAAGCAGCTTTGCGTTCAAGAGAGGCTGCTCTTCTTGCTGCCAAGCAAAACAAGGATGGGAAAGAGGAGGAAATTGCAACTCTTCGATCAGAAATTGAGAATTTTAAAGACGGGGCAGCAGCAGCAGCCGAACAGCTCCGAGAAGCAGAATCTGAGGCAAAGAGTCTTCGTACAAAGACGCAAAGAATGATTTTAACACAAGAAGAGATGGAGGAAGTTGTTTTGAAGAGATGTTGGCTTGCTCGTTACTGGGGTTTAGCGGTGCAACATGGCATATGTGCAGATATAGCAGTGTCAAAGCATGAGCATTGGTCGTCGTTAGCTCCTCTTCCATTTGAAGTTGTCATTTCTGCTGGACAAAAGGCAAAGGAGGAACCGTGGGATAGAAGTAAGCTGGCTCGGGATTTAACCGACCTCACAGGCGAAGGAAATATTGAGAGTATGCTTTCAGTGGAAATGGGTATGAGGGAATTATCTTCTCTAAAGGTTGAGGATGCTGTTGTAATTGCATTGGCCCAACATAGACGTCCTAATTCTGTTCGGCAGTCCATTTTAGATTCGAAATCAACTGGCAACCCTAAGTTCATGGAAGCATTTGATCTTAGTGACGAGGAGATTGAAGACATTTCTTTCAAAGTGGCTTGGCTGACTTACTTTTGGAGAAGAGCTAAAGAACACGGCGTGGAAGATGATATTGCAGACGATAGGCTTCAGTTATGGATAAGCCGTAGTGTGCAGACTCCAACTTGCCACGATGCTGTGGATGCGGAGCGGGGTGTTTATGAGCTGCGGAAGCTGGGGATAGAACAGCAACTTTGGGAAGCATCTCGTAAGGAAATCGATCAGCCCGTCTCGGCTTACAAATCTGCTGCAGCAGATTTTGACACCTCTTCGTGA

Protein Analysis

559

Amino Acids

61.67

Weight (kDa)

5.86

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 21
AatII GACGTC 1 cut(s) 1309
Acc16I TGCGCA 1 cut(s) 690
AccB7I CCANNNNNTGG 1 cut(s) 560
AccBSI CCGCTC 3 cut(s) 48, 176, 1552
AccII CGCG 1 cut(s) 37
AccIII TCCGGA 1 cut(s) 287
AclWI GGATC 2 cut(s) 12, 503
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 880
AcuI CTGAAG 3 cut(s) 641, 696, 1475
AcyI GRCGYC 1 cut(s) 1306
AdeI CACNNNGTG 1 cut(s) 1462
AfaI GTAC 2 cut(s) 32, 952
AfiI CCNNNNNNNGG 3 cut(s) 180, 368, 560
AgsI TTSAA 6 cut(s) 571, 798, 1006, 1118, 1400, 1414
AjnI CCWGG 1 cut(s) 583
Alw26I GTCTC 2 cut(s) 7, 1636
AlwI GGATC 2 cut(s) 12, 503
AlwNI CAGNNNCTG 1 cut(s) 932
Ama87I CYCGRG 2 cut(s) 55, 1179
Aor13HI TCCGGA 1 cut(s) 287
AoxI GGCC 6 cut(s) 120, 341, 422, 579, 699, 1293
ApoI RAATTY 1 cut(s) 880
AspLEI GCGC 4 cut(s) 94, 311, 610, 691
AspS9I GGNCC 3 cut(s) 423, 580, 1294
AsuC2I CCSGG 2 cut(s) 106, 323
AsuHPI GGTGA 1 cut(s) 346
AsuII TTCGAA 1 cut(s) 1340
AsuNHI GCTAGC 1 cut(s) 184
AvaI CYCGRG 2 cut(s) 55, 1179
BbsI GAAGAC 3 cut(s) 270, 938, 1407
BccI CCATC 4 cut(s) 146, 481, 830, 982
BceAI ACGGC 4 cut(s) 197, 322, 1474, 1491
BciT130I CCWGG 1 cut(s) 585
BcnI CCSGG 2 cut(s) 106, 323
BcoDI GTCTC 2 cut(s) 7, 1636
BfaI CTAG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 1650
BglII AGATCT 1 cut(s) 350
BlpI GCTNAGC 1 cut(s) 258
Bme1390I CCNGG 3 cut(s) 106, 323, 585
BmeT110I CYCGRG 2 cut(s) 55, 1179
BmgT120I GGNCC 3 cut(s) 423, 580, 1294
BmiI GGNNCC 2 cut(s) 582, 1155
BmrFI CCNGG 3 cut(s) 106, 323, 585
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 4 cut(s) 1264, 1525, 1534, 1613
BmtI GCTAGC 1 cut(s) 188
BmuI ACTGGG 1 cut(s) 1039
BpiI GAAGAC 3 cut(s) 270, 938, 1407
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 2 cut(s) 189, 708
Bpu1102I GCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 1340
BpuEI CTTGAG 1 cut(s) 737
BpuMI CCSGG 2 cut(s) 106, 323
Bsa29I ATCGAT 1 cut(s) 1620
BsaHI GRCGYC 1 cut(s) 1306
BsaJI CCNNGG 2 cut(s) 583, 1157
BsaWI WCCGGW 3 cut(s) 25, 125, 287
BsaXI ACNNNNNCTCC 4 cut(s) 484, 514, 1142, 1172
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 368, 560
Bse118I RCCGGY 2 cut(s) 76, 212
Bse1I ACTGG 3 cut(s) 488, 1034, 1354
BseAI TCCGGA 1 cut(s) 287
BseBI CCWGG 1 cut(s) 585
BseCI ATCGAT 1 cut(s) 1620
BseDI CCNNGG 2 cut(s) 583, 1157
BseGI GGATG 3 cut(s) 841, 1279, 1549
BseLI CCNNNNNNNGG 3 cut(s) 180, 368, 560
BseMII CTCAG 5 cut(s) 113, 203, 218, 272, 924
BseNI ACTGG 3 cut(s) 488, 1034, 1354
BseRI GAGGAG 5 cut(s) 25, 397, 860, 1095, 1406
BseYI CCCAGC 1 cut(s) 1576
BsgI GTGCAG 2 cut(s) 1080, 1535
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 6 cut(s) 122, 343, 424, 581, 701, 1295
BshVI ATCGAT 1 cut(s) 1620
BsiHKCI CYCGRG 2 cut(s) 55, 1179
BsiSI CCGG 7 cut(s) 26, 77, 106, 126, 213, 288, 323
BslFI GGGAC 2 cut(s) 88, 554
BslI CCNNNNNNNGG 3 cut(s) 180, 368, 560
BsmAI GTCTC 2 cut(s) 7, 1636
BsmBI CGTCTC 1 cut(s) 1636
BsmFI GGGAC 2 cut(s) 88, 554
BsnI GGCC 6 cut(s) 122, 343, 424, 581, 701, 1295
BsoBI CYCGRG 2 cut(s) 55, 1179
Bsp119I TTCGAA 1 cut(s) 1340
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 7 cut(s) 4, 238, 350, 508, 866, 1378, 1621
Bsp1720I GCTNAGC 1 cut(s) 258
BspANI GGCC 6 cut(s) 122, 343, 424, 581, 701, 1295
BspCNI CTCAG 5 cut(s) 112, 202, 217, 271, 925
BspDI ATCGAT 1 cut(s) 1620
BspEI TCCGGA 1 cut(s) 287
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 582, 1155
BspMAI CTGCAG 1 cut(s) 1654
BspOI GCTAGC 1 cut(s) 188
BspPI GGATC 2 cut(s) 12, 503
BspQI GCTCTTC 3 cut(s) 76, 816, 1438
BspT104I TTCGAA 1 cut(s) 1340
BsrBI CCGCTC 3 cut(s) 48, 176, 1552
BsrFI RCCGGY 2 cut(s) 76, 212
BsrI ACTGG 3 cut(s) 488, 1034, 1354
BssAI RCCGGY 2 cut(s) 76, 212
BssECI CCNNGG 2 cut(s) 583, 1157
BssMI GATC 7 cut(s) 4, 238, 350, 508, 866, 1378, 1621
BssNI GRCGYC 1 cut(s) 1306
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 276, 567, 1158
Bst6I CTCTTC 7 cut(s) 76, 816, 867, 978, 1001, 1113, 1438
BstACI GRCGYC 1 cut(s) 1306
BstBI TTCGAA 1 cut(s) 1340
BstC8I GCNNGC 7 cut(s) 78, 90, 186, 363, 693, 1020, 1176
BstDEI CTNAG 9 cut(s) 99, 189, 204, 258, 479, 708, 933, 1359, 1382
BstDSI CCRYGG 1 cut(s) 1157
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 3 cut(s) 841, 1279, 1549
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 4 cut(s) 94, 311, 610, 691
BstKTI GATC 7 cut(s) 7, 241, 353, 511, 869, 1381, 1624
BstMAI GTCTC 2 cut(s) 7, 1636
BstMBI GATC 7 cut(s) 4, 238, 350, 508, 866, 1378, 1621
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 3 cut(s) 104, 321, 583
BstSFI CTRYAG 1 cut(s) 1650
BstUI CGCG 1 cut(s) 37
BstV2I GAAGAC 3 cut(s) 270, 938, 1407
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 1620
BsuRI GGCC 6 cut(s) 122, 343, 424, 581, 701, 1295
BsuTUI ATCGAT 1 cut(s) 1620
BtgI CCRYGG 1 cut(s) 1157
BtgZI GCGATG 3 cut(s) 95, 231, 459
BtsCI GGATG 3 cut(s) 841, 1279, 1549
BtsI GCAGTG 2 cut(s) 47, 1077
BtsIMutI CAGTG 3 cut(s) 47, 1077, 1236
Cac8I GCNNGC 7 cut(s) 78, 90, 186, 363, 693, 1020, 1176
CaiI CAGNNNCTG 1 cut(s) 932
CfoI GCGC 4 cut(s) 94, 311, 610, 691
Cfr10I RCCGGY 2 cut(s) 76, 212
Cfr13I GGNCC 3 cut(s) 423, 580, 1294
ClaI ATCGAT 1 cut(s) 1620
CseI GACGC 1 cut(s) 967
Csp6I GTAC 2 cut(s) 31, 951
CviAII CATG 7 cut(s) 196, 269, 686, 754, 1049, 1082, 1366
CviQI GTAC 2 cut(s) 31, 951
DdeI CTNAG 9 cut(s) 99, 189, 204, 258, 479, 708, 933, 1359, 1382
DpnI GATC 7 cut(s) 6, 240, 352, 510, 868, 1380, 1623
DpnII GATC 7 cut(s) 4, 238, 350, 508, 866, 1378, 1621
DraI TTTAAA 1 cut(s) 886
DraIII CACNNNGTG 1 cut(s) 1462
DrdI GACNNNNNNGTC 1 cut(s) 21
DseDI GACNNNNNNGTC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 7 cut(s) 76, 816, 867, 978, 1001, 1113, 1438
EarI CTCTTC 7 cut(s) 76, 816, 867, 978, 1001, 1113, 1438
Eco57I CTGAAG 3 cut(s) 641, 696, 1475
Eco88I CYCGRG 2 cut(s) 55, 1179
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoO109I RGGNCCY 2 cut(s) 423, 580
EcoRII CCWGG 1 cut(s) 583
Esp3I CGTCTC 1 cut(s) 1636
FaeI CATG 7 cut(s) 199, 272, 689, 757, 1052, 1085, 1369
FaqI GGGAC 2 cut(s) 88, 554
FatI CATG 7 cut(s) 195, 268, 685, 753, 1048, 1081, 1365
FauI CCCGC 1 cut(s) 1545
FauNDI CATATG 1 cut(s) 1055
FokI GGATG 3 cut(s) 848, 1286, 1556
FspBI CTAG 1 cut(s) 185
FspI TGCGCA 1 cut(s) 690
GlaI GCGC 4 cut(s) 93, 310, 609, 690
GsaI CCCAGC 1 cut(s) 1580
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 6 cut(s) 122, 343, 424, 581, 701, 1295
HapII CCGG 7 cut(s) 26, 77, 106, 126, 213, 288, 323
HgaI GACGC 1 cut(s) 967
HhaI GCGC 4 cut(s) 94, 311, 610, 691
Hin1I GRCGYC 1 cut(s) 1306
Hin1II CATG 7 cut(s) 199, 272, 689, 757, 1052, 1085, 1369
Hin6I GCGC 4 cut(s) 92, 309, 608, 689
HinP1I GCGC 4 cut(s) 92, 309, 608, 689
HindIII AAGCTT 2 cut(s) 600, 662
HinfI GANTC 8 cut(s) 22, 129, 252, 337, 929, 943, 1337, 1519
HpaII CCGG 7 cut(s) 26, 77, 106, 126, 213, 288, 323
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 3 cut(s) 31, 210, 549
Hpy188I TCNGA 7 cut(s) 9, 251, 375, 660, 871, 920, 934
Hpy188III TCNNGA 5 cut(s) 288, 614, 798, 1181, 1674
Hpy8I GTNNAC 3 cut(s) 31, 210, 549
Hpy99I CGWCG 4 cut(s) 121, 233, 236, 1099
HpyAV CCTTC 4 cut(s) 525, 737, 772, 1199
HpyCH4III ACNGT 3 cut(s) 276, 567, 1158
HpyCH4IV ACGT 1 cut(s) 1306
HpyCH4V TGCA 8 cut(s) 272, 857, 1045, 1061, 1289, 1478, 1516, 1652
HpyF3I CTNAG 9 cut(s) 99, 189, 204, 258, 479, 708, 933, 1359, 1382
HpySE526I ACGT 1 cut(s) 1306
Hsp92I GRCGYC 1 cut(s) 1306
Hsp92II CATG 7 cut(s) 199, 272, 689, 757, 1052, 1085, 1369
HspAI GCGC 4 cut(s) 92, 309, 608, 689
Kpn2I TCCGGA 1 cut(s) 287
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 7 cut(s) 4, 238, 350, 508, 866, 1378, 1621
LguI GCTCTTC 3 cut(s) 76, 816, 1438
LmnI GCTCC 6 cut(s) 45, 410, 712, 921, 1108, 1549
LweI GCATC 4 cut(s) 1264, 1525, 1534, 1613
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 1306
MaeIII GTNAC 4 cut(s) 334, 490, 1025, 1385
MalI GATC 7 cut(s) 6, 240, 352, 510, 868, 1380, 1623
MbiI CCGCTC 3 cut(s) 48, 176, 1552
MboI GATC 7 cut(s) 4, 238, 350, 508, 866, 1378, 1621
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 1 cut(s) 350
MluCI AATT 8 cut(s) 504, 764, 852, 873, 880, 1250, 1284, 1312
MlyI GAGTC 4 cut(s) 31, 331, 952, 1513
MmeI TCCRAC 2 cut(s) 353, 1547
MreI CGCCGGCG 1 cut(s) 76
MroI TCCGGA 1 cut(s) 287
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 3 cut(s) 885, 974, 1187
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 7 cut(s) 26, 77, 106, 126, 213, 288, 323
MspR9I CCNGG 3 cut(s) 106, 323, 585
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 37
NaeI GCCGGC 1 cut(s) 78
NciI CCSGG 2 cut(s) 106, 323
NdeI CATATG 1 cut(s) 1055
NdeII GATC 7 cut(s) 4, 238, 350, 508, 866, 1378, 1621
NgoMIV GCCGGC 1 cut(s) 76
NheI GCTAGC 1 cut(s) 184
NlaIII CATG 7 cut(s) 199, 272, 689, 757, 1052, 1085, 1369
NlaIV GGNNCC 2 cut(s) 582, 1155
NmeAIII GCCGAG 2 cut(s) 319, 1613
NmuCI GTSAC 2 cut(s) 334, 1385
NsbI TGCGCA 1 cut(s) 690
NspI RCATGY 1 cut(s) 689
NspV TTCGAA 1 cut(s) 1340
PaeR7I CTCGAG 1 cut(s) 55
PciSI GCTCTTC 3 cut(s) 76, 816, 1438
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 1626
PdiI GCCGGC 1 cut(s) 78
PfeI GAWTC 4 cut(s) 129, 252, 929, 1337
PflMI CCANNNNNTGG 1 cut(s) 560
PleI GAGTC 4 cut(s) 30, 331, 951, 1513
PpsI GAGTC 4 cut(s) 30, 331, 951, 1513
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 1576
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 2 cut(s) 582, 1155
PspPI GGNCC 3 cut(s) 423, 580, 1294
PspXI VCTCGAGB 1 cut(s) 55
PstI CTGCAG 1 cut(s) 1654
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 2 cut(s) 32, 952
RsaNI GTAC 2 cut(s) 31, 951
SapI GCTCTTC 3 cut(s) 76, 816, 1438
SaqAI TTAA 3 cut(s) 885, 974, 1187
Sau3AI GATC 7 cut(s) 4, 238, 350, 508, 866, 1378, 1621
Sau96I GGNCC 3 cut(s) 423, 580, 1294
SchI GAGTC 4 cut(s) 31, 331, 952, 1513
ScrFI CCNGG 3 cut(s) 106, 323, 585
SfaNI GCATC 4 cut(s) 1264, 1525, 1534, 1613
SfcI CTRYAG 1 cut(s) 1650
Sfr274I CTCGAG 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 1340
SgrAI CRCCGGYG 2 cut(s) 76, 212
SlaI CTCGAG 1 cut(s) 55
SmlI CTYRAG 2 cut(s) 55, 716
SmoI CTYRAG 2 cut(s) 55, 716
Sse9I AATT 8 cut(s) 504, 764, 852, 873, 880, 1250, 1284, 1312
SspI AATATT 1 cut(s) 1213
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 3 cut(s) 104, 321, 583
TaaI ACNGT 3 cut(s) 276, 567, 1158
TaiI ACGT 1 cut(s) 1309
TaqI TCGA 4 cut(s) 56, 865, 1340, 1620
TasI AATT 8 cut(s) 504, 764, 852, 873, 880, 1250, 1284, 1312
TatI WGTACW 1 cut(s) 30
TauI GCSGC 6 cut(s) 40, 164, 173, 176, 265, 449
TfiI GAWTC 4 cut(s) 129, 252, 929, 1337
Tru1I TTAA 3 cut(s) 885, 974, 1187
Tru9I TTAA 3 cut(s) 885, 974, 1187
TscAI CASTG 3 cut(s) 47, 1077, 1236
TseFI GTSAC 2 cut(s) 334, 1385
Tsp45I GTSAC 2 cut(s) 334, 1385
TspDTI ATGAA 2 cut(s) 633, 1354
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 3 cut(s) 47, 1077, 1236
Van91I CCANNNNNTGG 1 cut(s) 560
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 1 cut(s) 880
XceI RCATGY 1 cut(s) 689
XhoI CTCGAG 1 cut(s) 55
XspI CTAG 1 cut(s) 185
ZraI GACGTC 1 cut(s) 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.