Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006502

Physical Location & Seq

Genomic Coordinates Reverse (-)

15391531 .. 15394794

Gene Structure 3264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12380.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAGCCAAATTGTTGAGCAGGAAGGAAGCAGCTTTGCGTTCAAGAGAGGCTGCTCTTCTCGCTGCCAAGCAAAACAAGGATGGGAAAGAGGAGGAAATTGCAACTCTTCGTTCAGAAATTGAGAATATAAAAGACGGGGCTGAAGCAGCAGTTGAACAGCTTCGAGAAGCAGAATCTGAAGCAAGGACTCTTCGTACAAAGACGCAAAGAATGATTTTAACTCAAGAAGAGATGGAGGAAGTTGTTTTGAAGAGATGTTGGCTTGCTCGTTATTGGGGTTTAGCTGTGCAACATGGCATATGTGCAGATATAGCAGTGTCAAAGCGTGAGCACTGGTCGTCGTTAGCTCCTCTTCCCTTTGAAGTTGTCATTTCTGCCGGACAAAAGGCAAAGGAGGAATCTTGGGGAAAAAGTGGTGATGATCCAGATAGAAGTAAGCTGGCACGGGATTTAACCGACCTTACCGGCGAAGGAAATATTGAGAGTATGCTTTCAGTGGAAATGGGTATGAGGGAACTATCTTCTCTAAAGGTTGAGGATGCTGTTGCGATTGCATTGGCCAAACATATACGTCCTAATTCCGTTCGGCAGTCCATTTTAGATTCCAAATCACCTGGCGACCCTAAGTTCATGGAGGCATTTGATCTTAGTGATGAGGAAATTGAAGATATTTCTTTCAAAGTGGCTTGGCTGACTTACTTTTGGAGAAGAGCTAAAGTACATGGTGTGGAAGACGATATTGCAGATGACCGGCTTCAGCTATGGATAAGCCGCAGTGCACAGACACCAACTTGCCATGATGCCGTGGATGTGGAGCGGGGTTTATATGAGCTGAGGAAGCTGGGGATAGAACAGCAACTTTGGGAAGCATCTCGTAAGGAAATCGATCAGCCCATCTCGGCTTACAAATCAGCTGCATCAGATTTTGATCCCTCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0008150 GO:0009825 GO:0009987 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031410 GO:0031982 GO:0032506 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.37

Weight (kDa)

5.04

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48860 AT3G48860 AT3G48860 AT5G23700 AT5G23700 AT5G23700
fragaria_vesca	FvH4_5g09200 FvH4_5g09200 FvH4_5g09200
malus_domestica	MD06G1132600.v1.1 MD14G1149000.v1.1
prunus_persica	Prupe.5G143600_v2.0.a1 Prupe.5G143600_v2.0.a1
pyrus_communis	pycom06g12420 pycom14g12380
rosa_chinensis	RchiOBHm_Chr7g0188961
rosa_laevigata	RLG00000004646
rosa_multiflora	Rmu_ssc0000113.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265900
rosa_rugosa	Rorug06G0495200 Rorug06G0495200
rosa_samantha	Rh7AG099800 Rh7BG102000 Rh7CG103300 Rh7DG101800
rosa_wichuraiana	Rw7G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	820
AciI	CCGC	2 cut(s)	775, 820
AclWI	GGATC	2 cut(s)	419, 926
AcoI	YGGCCR	1 cut(s)	561
AcuI	CTGAAG	3 cut(s)	165, 201, 743
AfaI	GTAC	2 cut(s)	199, 723
AgsI	TTSAA	6 cut(s)	45, 158, 253, 365, 668, 682
AjnI	CCWGG	1 cut(s)	616
Alw21I	GWGCWC	2 cut(s)	336, 784
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	2 cut(s)	419, 926
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	561
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	5 cut(s)	32, 53, 65, 149, 917
Asp700I	GAANNNNTTC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	431, 606
BaeGI	GKGCMC	1 cut(s)	784
BalI	TGGCCA	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	2 cut(s)	336, 784
BbvCI	CCTCAGC	1 cut(s)	836
BbvI	GCAGC	5 cut(s)	40, 44, 52, 161, 904
BccI	CCATC	3 cut(s)	77, 229, 905
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	1 cut(s)	618
BisI	GCNGC	6 cut(s)	33, 54, 66, 150, 775, 918
BlsI	GCNGC	6 cut(s)	34, 55, 67, 151, 776, 919
Bme1390I	CCNGG	1 cut(s)	618
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	4 cut(s)	532, 793, 881, 929
BpiI	GAAGAC	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	836
BpuEI	CTTGAG	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	930
BsaJI	CCNNGG	1 cut(s)	807
Bse118I	RCCGGY	2 cut(s)	467, 753
Bse1I	ACTGG	1 cut(s)	341
Bse8I	GATNNNNATC	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	888
BseDI	CCNNGG	1 cut(s)	807
BseGI	GGATG	3 cut(s)	88, 547, 817
BseJI	GATNNNNATC	1 cut(s)	930
BseMII	CTCAG	1 cut(s)	827
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	107, 342
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	5 cut(s)	40, 44, 52, 161, 904
BseYI	CCCAGC	1 cut(s)	844
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	563
BshVI	ATCGAT	1 cut(s)	888
BsiHKAI	GWGCWC	2 cut(s)	336, 784
BsiSI	CCGG	3 cut(s)	381, 468, 754
BsnI	GGCC	1 cut(s)	563
Bsp1286I	GDGCHC	2 cut(s)	336, 784
Bsp143I	GATC	4 cut(s)	424, 646, 889, 931
BspACI	CCGC	2 cut(s)	775, 820
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	1 cut(s)	828
BspDI	ATCGAT	1 cut(s)	888
BspPI	GGATC	2 cut(s)	419, 926
BspQI	GCTCTTC	2 cut(s)	63, 706
BsrBI	CCGCTC	1 cut(s)	820
BsrFI	RCCGGY	2 cut(s)	467, 753
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	2 cut(s)	467, 753
BssECI	CCNNGG	1 cut(s)	807
BssMI	GATC	4 cut(s)	424, 646, 889, 931
Bst2UI	CCWGG	1 cut(s)	618
Bst6I	CTCTTC	7 cut(s)	63, 114, 198, 225, 248, 360, 706
BstC8I	GCNNGC	2 cut(s)	267, 444
BstDEI	CTNAG	3 cut(s)	627, 650, 836
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	3 cut(s)	88, 547, 817
BstKTI	GATC	4 cut(s)	427, 649, 892, 934
BstMBI	GATC	4 cut(s)	424, 646, 889, 931
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 149, 314, 841
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	616
BstSLI	GKGCMC	1 cut(s)	784
BstV1I	GCAGC	5 cut(s)	40, 44, 52, 161, 904
BstV2I	GAAGAC	1 cut(s)	741
Bsu15I	ATCGAT	1 cut(s)	888
BsuRI	GGCC	1 cut(s)	563
BsuTUI	ATCGAT	1 cut(s)	888
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	3 cut(s)	88, 547, 817
BtsI	GCAGTG	2 cut(s)	324, 784
BtsIMutI	CAGTG	4 cut(s)	324, 334, 504, 784
Cac8I	GCNNGC	2 cut(s)	267, 444
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr10I	RCCGGY	2 cut(s)	467, 753
ClaI	ATCGAT	1 cut(s)	888
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	198, 722
CviAII	CATG	4 cut(s)	296, 634, 725, 800
CviQI	GTAC	2 cut(s)	198, 722
DdeI	CTNAG	3 cut(s)	627, 650, 836
DpnI	GATC	4 cut(s)	426, 648, 891, 933
DpnII	GATC	4 cut(s)	424, 646, 889, 931
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	7 cut(s)	63, 114, 198, 225, 248, 360, 706
EarI	CTCTTC	7 cut(s)	63, 114, 198, 225, 248, 360, 706
Eco57I	CTGAAG	3 cut(s)	165, 201, 743
EcoRII	CCWGG	1 cut(s)	616
FaeI	CATG	4 cut(s)	299, 637, 728, 803
FatI	CATG	4 cut(s)	295, 633, 724, 799
FauI	CCCGC	1 cut(s)	813
FauNDI	CATATG	1 cut(s)	302
Fnu4HI	GCNGC	6 cut(s)	33, 54, 66, 150, 775, 918
FokI	GGATG	3 cut(s)	95, 554, 824
Fsp4HI	GCNGC	6 cut(s)	33, 54, 66, 150, 775, 918
GluI	GCNGC	6 cut(s)	33, 54, 66, 150, 775, 918
GsaI	CCCAGC	1 cut(s)	848
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	3 cut(s)	381, 468, 754
HgaI	GACGC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	299, 637, 728, 803
HinfI	GANTC	4 cut(s)	176, 190, 401, 605
HpaII	CCGG	3 cut(s)	381, 468, 754
HphI	GGTGA	2 cut(s)	431, 606
Hpy166II	GTNNAC	1 cut(s)	782
Hpy188I	TCNGA	3 cut(s)	118, 181, 925
Hpy188III	TCNNGA	5 cut(s)	45, 167, 227, 428, 942
Hpy8I	GTNNAC	1 cut(s)	782
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	19, 467
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	7 cut(s)	104, 292, 308, 557, 746, 782, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 149, 314, 841
HpyF3I	CTNAG	3 cut(s)	627, 650, 836
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	4 cut(s)	299, 637, 728, 803
Kzo9I	GATC	4 cut(s)	424, 646, 889, 931
LguI	GCTCTTC	2 cut(s)	63, 706
LmnI	GCTCC	2 cut(s)	355, 817
Lsp1109I	GCAGC	5 cut(s)	40, 44, 52, 161, 904
LweI	GCATC	4 cut(s)	532, 793, 881, 929
MaeII	ACGT	1 cut(s)	574
MalI	GATC	4 cut(s)	426, 648, 891, 933
MbiI	CCGCTC	1 cut(s)	820
MboI	GATC	4 cut(s)	424, 646, 889, 931
MhlI	GDGCHC	2 cut(s)	336, 784
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	5 cut(s)	11, 99, 120, 580, 663
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	184
Mox20I	TGGCCA	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	2 cut(s)	221, 455
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	917
MspI	CCGG	3 cut(s)	381, 468, 754
MspR9I	CCNGG	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	4 cut(s)	62, 149, 314, 841
NdeI	CATATG	1 cut(s)	302
NdeII	GATC	4 cut(s)	424, 646, 889, 931
NlaIII	CATG	4 cut(s)	299, 637, 728, 803
NmeAIII	GCCGAG	1 cut(s)	881
PciSI	GCTCTTC	2 cut(s)	63, 706
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	176, 401, 605
PkrI	GCNGC	6 cut(s)	34, 55, 67, 151, 776, 919
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	2 cut(s)	199, 723
RsaNI	GTAC	2 cut(s)	198, 722
SapI	GCTCTTC	2 cut(s)	63, 706
SaqAI	TTAA	2 cut(s)	221, 455
SatI	GCNGC	6 cut(s)	33, 54, 66, 150, 775, 918
Sau3AI	GATC	4 cut(s)	424, 646, 889, 931
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	618
SduI	GDGCHC	2 cut(s)	336, 784
SfaNI	GCATC	4 cut(s)	532, 793, 881, 929
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	5 cut(s)	11, 99, 120, 580, 663
SsiI	CCGC	2 cut(s)	775, 820
SspI	AATATT	1 cut(s)	481
StyD4I	CCNGG	1 cut(s)	616
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	2 cut(s)	166, 888
TasI	AATT	5 cut(s)	11, 99, 120, 580, 663
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	3 cut(s)	176, 401, 605
Tru1I	TTAA	2 cut(s)	221, 455
Tru9I	TTAA	2 cut(s)	221, 455
TscAI	CASTG	4 cut(s)	324, 341, 504, 784
TseI	GCWGC	5 cut(s)	32, 53, 65, 149, 917
TspDTI	ATGAA	1 cut(s)	622
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	4 cut(s)	324, 341, 504, 784
VneI	GTGCAC	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.