Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006502

Physical Location & Seq

Genomic Coordinates Forward (+)

61234020 .. 61237182

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0495200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCTGCTCCCTCAGATTGCAGAAAGCGAGGATGAGAGAATAGTAAGAGAGTTTGCAGTACTGGTGGATGCATATGAAGCTGACACTAATACAAGTGGAAGTACCACCGAAGAAGAAGGTGGGGAGAAATCCACCATATCCGAAAGATTCATGGGGATGAAAGCTGCTATAGTTACAAACAATTCAAGTTTGAAGTCTTTTGGTACCAAACTTGGTTTCAGCGTGTTGCCAAATGATGGTTTTATCCAAAGCAGTGAGGCCCAAGCTGAGCTGCCAGTTGATACTGTGGCATCTGAATTGCTGAGGTTGCTTGGATTTCAAGAAGGAAAGACACTGGAGTCGAGTCGGTATGATTTAATGTTTGTGCATGTTGGGGCTGGTGAGGTGAATGTTAAGAATGACAAGGCTATTGCAGATGATGTGGAGTATCCCAATGCTTTGATTGGTGCTATAATGAATATAGGCAAACCTGGAACTGAAATCAGTCTCCGCTTGCACTTGTCTGTTGTAATGAGCTATGGGGGTACCTCGGAGAAAGATGATCCCGACTTGTCGTTTTCAATCAGTAAAGATAACTCCAATCTTTCAAAGCTCGTTCCTCACCAAAGTTATACCATGAAAGGAGAGGTTCCGCGGAAGGATGTCAGGCACCATTCCCCAATGTTACTGGCTCAGTGGCAATATGCTGTGACCCGCAAGGACATGGCAGAGACATTCTCTTTTAAAGATTTCAAGGAGCATGGTGGAAATCTTGTAATACCGGCAGATAGATTTCTGCACGAAGTAGCCTTCAAACTTTGGAAGGCCCCCAAATATGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0008150 GO:0009825 GO:0009987 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031410 GO:0031982 GO:0032506 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

30.21

Weight (kDa)

5.17

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48860 AT3G48860 AT3G48860 AT5G23700 AT5G23700 AT5G23700
fragaria_vesca	FvH4_5g09200 FvH4_5g09200 FvH4_5g09200
malus_domestica	MD06G1132600.v1.1 MD14G1149000.v1.1
prunus_persica	Prupe.5G143600_v2.0.a1 Prupe.5G143600_v2.0.a1
pyrus_communis	pycom06g12420 pycom14g12380
rosa_chinensis	RchiOBHm_Chr7g0188961
rosa_laevigata	RLG00000004646
rosa_multiflora	Rmu_ssc0000113.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265900
rosa_rugosa	Rorug06G0495200 Rorug06G0495200
rosa_samantha	Rh7AG099800 Rh7BG102000 Rh7CG103300 Rh7DG101800
rosa_wichuraiana	Rw7G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	337
Acc65I	GGTACC	2 cut(s)	203, 524
AccB1I	GGYRCC	3 cut(s)	203, 524, 648
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccII	CGCG	1 cut(s)	634
AciI	CCGC	4 cut(s)	490, 632, 634, 694
AclWI	GGATC	1 cut(s)	536
AfaI	GTAC	4 cut(s)	60, 103, 205, 526
AfiI	CCNNNNNNNGG	2 cut(s)	236, 815
AgsI	TTSAA	7 cut(s)	186, 193, 320, 561, 588, 733, 793
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	6 cut(s)	80, 164, 266, 271, 516, 592
AluI	AGCT	6 cut(s)	80, 164, 266, 271, 516, 592
Alw26I	GTCTC	2 cut(s)	491, 704
AlwI	GGATC	1 cut(s)	536
AoxI	GGCC	2 cut(s)	258, 804
ApeKI	GCWGC	3 cut(s)	4, 164, 271
Asp718I	GGTACC	2 cut(s)	203, 524
AspS9I	GGNCC	2 cut(s)	259, 805
AsuHPI	GGTGA	3 cut(s)	392, 397, 593
BanI	GGYRCC	3 cut(s)	203, 524, 648
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	151, 258
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	491, 704
BfmI	CTRYAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	3 cut(s)	5, 165, 272
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	3 cut(s)	6, 166, 273
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	471
BmgT120I	GGNCC	2 cut(s)	259, 805
BmiI	GGNNCC	5 cut(s)	205, 526, 630, 650, 807
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	58, 299
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	528, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 815
Bse118I	RCCGGY	1 cut(s)	760
Bse1I	ACTGG	4 cut(s)	66, 275, 339, 672
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	528, 632
BseGI	GGATG	4 cut(s)	37, 73, 162, 646
BseLI	CCNNNNNNNGG	2 cut(s)	236, 815
BseMII	CTCAG	4 cut(s)	26, 258, 293, 686
BseNI	ACTGG	4 cut(s)	66, 275, 339, 672
BseXI	GCAGC	2 cut(s)	151, 258
BsgI	GTGCAG	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	634
BshFI	GGCC	2 cut(s)	260, 806
BshNI	GGYRCC	3 cut(s)	203, 524, 648
BsiSI	CCGG	1 cut(s)	761
BslI	CCNNNNNNNGG	2 cut(s)	236, 815
BsmAI	GTCTC	2 cut(s)	491, 704
BsnI	GGCC	2 cut(s)	260, 806
Bsp143I	GATC	1 cut(s)	541
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	4 cut(s)	490, 632, 634, 694
BspANI	GGCC	2 cut(s)	260, 806
BspCNI	CTCAG	4 cut(s)	25, 259, 294, 685
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	5 cut(s)	205, 526, 630, 650, 807
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	3 cut(s)	203, 524, 648
BsrFI	RCCGGY	1 cut(s)	760
BsrI	ACTGG	4 cut(s)	66, 275, 339, 672
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	2 cut(s)	528, 632
BssMI	GATC	1 cut(s)	541
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	4 cut(s)	12, 267, 302, 672
BstDSI	CCRYGG	1 cut(s)	632
BstF5I	GGATG	4 cut(s)	37, 73, 162, 646
BstFNI	CGCG	1 cut(s)	634
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	2 cut(s)	491, 704
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 307
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	634
BstV1I	GCAGC	2 cut(s)	151, 258
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	260, 806
BtgI	CCRYGG	1 cut(s)	632
BtsCI	GGATG	4 cut(s)	37, 73, 162, 646
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	3 cut(s)	259, 332, 680
Cac8I	GCNNGC	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	760
Cfr13I	GGNCC	2 cut(s)	259, 805
Cfr42I	CCGCGG	1 cut(s)	635
Csp6I	GTAC	4 cut(s)	59, 102, 204, 525
CviAII	CATG	6 cut(s)	151, 368, 616, 703, 740, 822
CviQI	GTAC	4 cut(s)	59, 102, 204, 525
DdeI	CTNAG	4 cut(s)	12, 267, 302, 672
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
DraI	TTTAAA	1 cut(s)	724
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	805
EcoRII	CCWGG	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	6 cut(s)	154, 371, 619, 706, 743, 825
FatI	CATG	6 cut(s)	150, 367, 615, 702, 739, 821
FauI	CCCGC	1 cut(s)	701
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	5, 165, 272
FokI	GGATG	4 cut(s)	44, 80, 169, 653
Fsp4HI	GCNGC	3 cut(s)	5, 165, 272
GluI	GCNGC	3 cut(s)	5, 165, 272
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	260, 806
HapII	CCGG	1 cut(s)	761
Hin1II	CATG	6 cut(s)	154, 371, 619, 706, 743, 825
HinfI	GANTC	3 cut(s)	147, 338, 343
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	3 cut(s)	392, 397, 593
Hpy188I	TCNGA	4 cut(s)	15, 142, 295, 532
Hpy188III	TCNNGA	2 cut(s)	320, 545
HpyAV	CCTTC	5 cut(s)	110, 317, 631, 796, 799
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	7 cut(s)	20, 56, 71, 367, 413, 496, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 307
HpyF3I	CTNAG	4 cut(s)	12, 267, 302, 672
Hsp92II	CATG	6 cut(s)	154, 371, 619, 706, 743, 825
KpnI	GGTACC	2 cut(s)	207, 528
KspI	CCGCGG	1 cut(s)	635
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	12, 736, 818
LpnPI	CCDG	9 cut(s)	47, 288, 320, 363, 456, 483, 631, 653, 774
Lsp1109I	GCAGC	2 cut(s)	151, 258
LweI	GCATC	2 cut(s)	58, 299
MaeIII	GTNAC	3 cut(s)	172, 663, 688
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	2 cut(s)	122, 125
MluCI	AATT	2 cut(s)	181, 296
MlyI	GAGTC	2 cut(s)	347, 352
MnlI	CCTC	8 cut(s)	21, 22, 250, 297, 376, 538, 609, 619
Mph1103I	ATGCAT	1 cut(s)	73
MseI	TTAA	3 cut(s)	356, 393, 723
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	2 cut(s)	77, 307
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	6 cut(s)	154, 371, 619, 706, 743, 825
NlaIV	GGNNCC	5 cut(s)	205, 526, 630, 650, 807
NmuCI	GTSAC	1 cut(s)	688
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	6, 166, 273
PleI	GAGTC	2 cut(s)	346, 351
PpsI	GAGTC	2 cut(s)	346, 351
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	5 cut(s)	205, 526, 630, 650, 807
PspPI	GGNCC	2 cut(s)	259, 805
RsaI	GTAC	4 cut(s)	60, 103, 205, 526
RsaNI	GTAC	4 cut(s)	59, 102, 204, 525
RseI	CAYNNNNRTG	1 cut(s)	155
SacII	CCGCGG	1 cut(s)	635
SaqAI	TTAA	3 cut(s)	356, 393, 723
SatI	GCNGC	3 cut(s)	5, 165, 272
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	2 cut(s)	259, 805
ScaI	AGTACT	1 cut(s)	60
SchI	GAGTC	2 cut(s)	347, 352
ScrFI	CCNGG	1 cut(s)	471
SfaNI	GCATC	2 cut(s)	58, 299
SfcI	CTRYAG	1 cut(s)	168
Sfr303I	CCGCGG	1 cut(s)	635
SgrBI	CCGCGG	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	181, 296
SsiI	CCGC	4 cut(s)	490, 632, 634, 694
StyD4I	CCNGG	1 cut(s)	469
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	181, 296
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	3 cut(s)	356, 393, 723
Tru9I	TTAA	3 cut(s)	356, 393, 723
TscAI	CASTG	3 cut(s)	259, 339, 680
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	3 cut(s)	4, 164, 271
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	5 cut(s)	90, 139, 173, 470, 632
TspRI	CASTG	3 cut(s)	259, 339, 680
Van91I	CCANNNNNTGG	1 cut(s)	236
XceI	RCATGY	1 cut(s)	371
ZrmI	AGTACT	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.