Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007070

Physical Location & Seq

Genomic Coordinates Reverse (-)

18284787 .. 18288118

Gene Structure 3332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGAGGTTTTCTACTACTTGGTGTTTGGAGTCATGGCTGCCGTAGTGGCAGCGTTGGAGCTTAGCAAGACGAACAAGGATCGGATCAACACTTCGTCTTCCTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGCTGGGGATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATGGTTTTGGAAAAGGAGATATTGGTCAGCTATTCATTGCTGGTTTTGGTTCGTCAATGTTGTTTGGAACTATTGTTGGATCTCTGGCTGACAAACAGGGTCGAAAGAGGGCATGTGTTACATACTGTATAGTTTACATACTAAGTTGCATCACCAAGCACTCTCCACAGTACAAAGTTTTGATGGTTGGCCGTATCTTGGGTGGTATTGCTACATCTCTCTTGTTTTCTGCTTTCGAGTCCTGGCTAATTGCAGAGCACAATAAGAGGAACTTTGAGCAACAGTGGCTGTCACTTACATTCTCTAAGGCTGTATTTCTTGGAAACGGTCTGGTGGCTATCCTTTCGGGATTGTTTGGCAATCTTCTTGTTGACACTTTTTCCTTTGGTCCTGTTGCTCCCTTTGACGCCGCTGCGTGCTTTCTTGCAATTGGAATGGCGATCATATTGGGAACATGGTCTGAGAATTTTGGAGATCCATCTGACAGCAAAGACTTGCTGACTCAGTTCAAAGTTGCTGCCATAGCAATTGCTTCAGATGAAAAGATTGCATTGCTGGGCGCTATTCAGTCTCTATTCGAAGCCTCGATGTACACCTTTGTTTTCCTCTGGACACCAGCTCTTAGCCCAAACGATGAAGAAATTCCACATGGCTTCGTCTTTGCAACCTTCATGTTAGCCTCAATGTTGGGAAGCTCCCTTGCAGCTCGTCTCATGTCTCGCTCATCTCTCAGAGTCGAAAACTACATGCAAATTGTCTTTCTAGTCTCGGCTGCTTCACTTCTTCTTCCCATTACAACAAGTGTCTTGGTGACACCGTCAAAGGTGAAAGACGAAGGATTGTCGTTAACTAGCTCCATTCAGCTGCTTGGTTTCTGTGTTTTTGAGTCTTGTGTCGGAATATTTTGGCCTTCGATAATGAAGATGAGGTCGCAGTATATACCTGAAGAAGCACGAAGCACCATAATGAATTTCTTCCGTGTTCCACTCAACATCTTTGTCTGCATCGTCTTGTACAACGTGGACGCATTTCCGATCACAATCATGTTTGGTATGTGCTCAATCTTCCTCTTCGTAGCCTCCATATTACAACGGCGGCTTATGGTCATCTCTGAAAAGCCAAAGGCAGAAGATTGGAGTCCGATGAAGGAGCGAAACTCGGAAGTTGATCCTCTTACCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

460

Amino Acids

50.88

Weight (kDa)

6.35

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_5	PF05631	4 - 358	7.8e-181	Sugar-tranasporters, 12 TM
MFS_1	PF07690	43 - 393	9.2e-18	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49310 AT4G27720
fragaria_vesca	FvH4_7g32400 FvH4_7g32400 FvH4_7g32400 FvH4_7g32400
malus_domestica	MD01G1225400.v1.1 MD07G1295900.v1.1
prunus_persica	Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1
pyrus_communis	pycom01g23380 pycom07g26870
rosa_chinensis	RchiOBHm_Chr1g0381971
rosa_laevigata	RLG00000026197
rosa_multiflora	Rmu_sc0010238.1_g000001 Rmu_sc0017430.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278300
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455800 Rh1BG412900 Rh1CG427800 Rh1DG445200
rosa_wichuraiana	Rw1G041340 Rw1G041510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	609, 1294
AclWI	GGATC	5 cut(s)	87, 92, 286, 668, 1361
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	3 cut(s)	664, 840, 1168
AcuI	CTGAAG	3 cut(s)	149, 717, 1164
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	3 cut(s)	371, 791, 1214
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	106, 115, 709
AjnI	CCWGG	1 cut(s)	440
AluBI	AGCT	7 cut(s)	61, 229, 818, 894, 905, 1053, 1063
AluI	AGCT	7 cut(s)	61, 229, 818, 894, 905, 1053, 1063
Alw21I	GWGCWC	2 cut(s)	459, 1259
Alw26I	GTCTC	4 cut(s)	774, 914, 921, 970
AlwI	GGATC	5 cut(s)	87, 92, 286, 668, 1361
AlwNI	CAGNNNCTG	1 cut(s)	487
AoxI	GGCC	2 cut(s)	388, 1106
ApeKI	GCWGC	7 cut(s)	38, 50, 611, 716, 902, 971, 1063
ApoI	RAATTY	3 cut(s)	664, 840, 1168
Asp700I	GAANNNNTTC	2 cut(s)	840, 1172
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	2 cut(s)	170, 587
AsuHPI	GGTGA	3 cut(s)	343, 1021, 1036
AsuII	TTCGAA	1 cut(s)	777
AvaII	GGWCC	2 cut(s)	170, 587
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	459, 1259
BbvI	GCAGC	7 cut(s)	25, 62, 598, 703, 914, 958, 1050
BccI	CCATC	3 cut(s)	142, 376, 685
BceAI	ACGGC	3 cut(s)	26, 375, 1307
BciT130I	CCWGG	1 cut(s)	442
BcoDI	GTCTC	4 cut(s)	774, 914, 921, 970
BfaI	CTAG	2 cut(s)	962, 1050
BfoI	RGCGCY	1 cut(s)	762
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	9 cut(s)	39, 51, 609, 612, 717, 903, 972, 1064, 1295
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	9 cut(s)	40, 52, 610, 613, 718, 904, 973, 1065, 1296
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	2 cut(s)	170, 587
BmgT120I	GGNCC	2 cut(s)	170, 587
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	357, 1212
BpiI	GAAGAC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	1340, 1372
Bpu1102I	GCTNAGC	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	777
BsaBI	GATNNNNATC	1 cut(s)	1238
BsaHI	GRCGYC	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse3DI	GCAATG	2 cut(s)	234, 749
Bse8I	GATNNNNATC	1 cut(s)	1238
BseBI	CCWGG	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	1238
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	2 cut(s)	234, 749
BseMII	CTCAG	3 cut(s)	651, 716, 943
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	7 cut(s)	25, 62, 598, 703, 914, 958, 1050
BseYI	CCCAGC	2 cut(s)	152, 754
BshFI	GGCC	2 cut(s)	390, 1108
BsiHKAI	GWGCWC	2 cut(s)	459, 1259
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	4 cut(s)	774, 914, 921, 970
BsmBI	CGTCTC	1 cut(s)	914
BsnI	GGCC	2 cut(s)	390, 1108
Bsp119I	TTCGAA	1 cut(s)	777
Bsp1286I	GDGCHC	2 cut(s)	459, 1259
Bsp1407I	TGTACA	2 cut(s)	789, 1212
Bsp143I	GATC	7 cut(s)	79, 84, 278, 639, 673, 1233, 1366
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	2 cut(s)	609, 1294
BspANI	GGCC	2 cut(s)	390, 1108
BspCNI	CTCAG	3 cut(s)	652, 715, 942
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	5 cut(s)	87, 92, 286, 668, 1361
BspT104I	TTCGAA	1 cut(s)	777
BsrDI	GCAATG	2 cut(s)	234, 749
BsrGI	TGTACA	2 cut(s)	789, 1212
BssMI	GATC	7 cut(s)	79, 84, 278, 639, 673, 1233, 1366
BssNI	GRCGYC	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	5 cut(s)	326, 369, 483, 527, 1017
Bst6I	CTCTTC	1 cut(s)	1274
BstACI	GRCGYC	1 cut(s)	606
BstAUI	TGTACA	2 cut(s)	789, 1212
BstBI	TTCGAA	1 cut(s)	777
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	7 cut(s)	62, 341, 504, 660, 702, 821, 929
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	7 cut(s)	82, 87, 281, 642, 676, 1236, 1369
BstMAI	GTCTC	4 cut(s)	774, 914, 921, 970
BstMBI	GATC	7 cut(s)	79, 84, 278, 639, 673, 1233, 1366
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 484, 722
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	2 cut(s)	315, 949
BstSCI	CCNGG	1 cut(s)	440
BstV1I	GCAGC	7 cut(s)	25, 62, 598, 703, 914, 958, 1050
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	2 cut(s)	278, 673
BstYI	RGATCY	2 cut(s)	278, 673
BsuRI	GGCC	2 cut(s)	390, 1108
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	616
CaiI	CAGNNNCTG	1 cut(s)	487
CfoI	GCGC	1 cut(s)	761
Cfr13I	GGNCC	2 cut(s)	170, 587
CseI	GACGC	2 cut(s)	614, 1232
Csp6I	GTAC	3 cut(s)	370, 790, 1213
CviAII	CATG	8 cut(s)	34, 312, 654, 848, 871, 913, 946, 1243
CviQI	GTAC	3 cut(s)	370, 790, 1213
DdeI	CTNAG	7 cut(s)	62, 341, 504, 660, 702, 821, 929
DpnI	GATC	7 cut(s)	81, 86, 280, 641, 675, 1235, 1368
DpnII	GATC	7 cut(s)	79, 84, 278, 639, 673, 1233, 1366
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	1274
EarI	CTCTTC	1 cut(s)	1274
Eco47I	GGWCC	2 cut(s)	170, 587
Eco57I	CTGAAG	3 cut(s)	149, 717, 1164
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	914
FaeI	CATG	8 cut(s)	37, 315, 657, 851, 874, 916, 949, 1246
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FatI	CATG	8 cut(s)	33, 311, 653, 847, 870, 912, 945, 1242
Fnu4HI	GCNGC	9 cut(s)	39, 51, 609, 612, 717, 903, 972, 1064, 1295
Fsp4HI	GCNGC	9 cut(s)	39, 51, 609, 612, 717, 903, 972, 1064, 1295
FspBI	CTAG	2 cut(s)	962, 1050
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	9 cut(s)	39, 51, 609, 612, 717, 903, 972, 1064, 1295
GsaI	CCCAGC	2 cut(s)	156, 758
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	2 cut(s)	390, 1108
HgaI	GACGC	2 cut(s)	614, 1232
HhaI	GCGC	1 cut(s)	761
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	8 cut(s)	37, 315, 657, 851, 874, 916, 949, 1246
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HincII	GTYRAC	2 cut(s)	571, 1047
HindII	GTYRAC	2 cut(s)	571, 1047
HinfI	GANTC	6 cut(s)	30, 437, 700, 933, 1085, 1336
HpaI	GTTAAC	1 cut(s)	1047
HphI	GGTGA	3 cut(s)	343, 1021, 1036
Hpy166II	GTNNAC	5 cut(s)	334, 571, 792, 1047, 1222
Hpy188III	TCNNGA	3 cut(s)	115, 546, 808
Hpy8I	GTNNAC	5 cut(s)	334, 571, 792, 1047, 1222
HpyAV	CCTTC	5 cut(s)	112, 877, 1028, 1119, 1339
HpyCH4III	ACNGT	5 cut(s)	326, 369, 483, 527, 1017
HpyCH4IV	ACGT	1 cut(s)	1218
HpyCH4V	TGCA	8 cut(s)	348, 452, 626, 749, 863, 902, 949, 1203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 484, 722
HpyF3I	CTNAG	7 cut(s)	62, 341, 504, 660, 702, 821, 929
HpySE526I	ACGT	1 cut(s)	1218
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	8 cut(s)	37, 315, 657, 851, 874, 916, 949, 1246
HspAI	GCGC	1 cut(s)	759
KspAI	GTTAAC	1 cut(s)	1047
Kzo9I	GATC	7 cut(s)	79, 84, 278, 639, 673, 1233, 1366
LmnI	GCTCC	5 cut(s)	58, 601, 899, 1058, 1348
Lsp1109I	GCAGC	7 cut(s)	25, 62, 598, 703, 914, 958, 1050
LweI	GCATC	2 cut(s)	357, 1212
MaeI	CTAG	2 cut(s)	962, 1050
MaeII	ACGT	1 cut(s)	1218
MaeIII	GTNAC	3 cut(s)	316, 489, 1009
MalI	GATC	7 cut(s)	81, 86, 280, 641, 675, 1235, 1368
MboI	GATC	7 cut(s)	79, 84, 278, 639, 673, 1233, 1366
MfeI	CAATTG	2 cut(s)	627, 726
MflI	RGATCY	2 cut(s)	278, 673
MhlI	GDGCHC	2 cut(s)	459, 1259
MluCI	AATT	9 cut(s)	106, 121, 447, 627, 664, 726, 840, 951, 1168
MlyI	GAGTC	6 cut(s)	39, 446, 694, 942, 1094, 1345
MmeI	TCCRAC	3 cut(s)	36, 256, 1075
MroXI	GAANNNNTTC	2 cut(s)	840, 1172
MseI	TTAA	1 cut(s)	1046
MslI	CAYNNNNRTG	2 cut(s)	1163, 1241
MspA1I	CMGCKG	2 cut(s)	611, 1063
MspR9I	CCNGG	1 cut(s)	442
MunI	CAATTG	2 cut(s)	627, 726
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	47, 484, 722
NdeII	GATC	7 cut(s)	79, 84, 278, 639, 673, 1233, 1366
NlaIII	CATG	8 cut(s)	37, 315, 657, 851, 874, 916, 949, 1246
NlaIV	GGNNCC	1 cut(s)	171
NmeAIII	GCCGAG	1 cut(s)	947
NmuCI	GTSAC	2 cut(s)	489, 1009
NspI	RCATGY	2 cut(s)	315, 949
NspV	TTCGAA	1 cut(s)	777
PdmI	GAANNNNTTC	2 cut(s)	840, 1172
PflFI	GACNNNGTC	1 cut(s)	1015
PkrI	GCNGC	9 cut(s)	40, 52, 610, 613, 718, 904, 973, 1065, 1296
PleI	GAGTC	6 cut(s)	38, 445, 694, 941, 1093, 1344
PpsI	GAGTC	6 cut(s)	38, 445, 694, 941, 1093, 1344
PpuMI	RGGWCCY	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	440
PspFI	CCCAGC	2 cut(s)	152, 754
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	170, 587
PspPPI	RGGWCCY	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	278, 673
PsyI	GACNNNGTC	1 cut(s)	1015
PvuII	CAGCTG	1 cut(s)	1063
RsaI	GTAC	3 cut(s)	371, 791, 1214
RsaNI	GTAC	3 cut(s)	370, 790, 1213
RseI	CAYNNNNRTG	2 cut(s)	1163, 1241
SaqAI	TTAA	1 cut(s)	1046
SatI	GCNGC	9 cut(s)	39, 51, 609, 612, 717, 903, 972, 1064, 1295
Sau3AI	GATC	7 cut(s)	79, 84, 278, 639, 673, 1233, 1366
Sau96I	GGNCC	2 cut(s)	170, 587
SchI	GAGTC	6 cut(s)	39, 446, 694, 942, 1094, 1345
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	2 cut(s)	459, 1259
SfaNI	GCATC	2 cut(s)	357, 1212
SfuI	TTCGAA	1 cut(s)	777
SinI	GGWCC	2 cut(s)	170, 587
SmiMI	CAYNNNNRTG	2 cut(s)	1163, 1241
Sse9I	AATT	9 cut(s)	106, 121, 447, 627, 664, 726, 840, 951, 1168
SsiI	CCGC	2 cut(s)	609, 1294
SspI	AATATT	1 cut(s)	1101
SspMI	CTAG	2 cut(s)	962, 1050
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	5 cut(s)	326, 369, 483, 527, 1017
TaiI	ACGT	1 cut(s)	1221
TaqI	TCGA	6 cut(s)	301, 435, 777, 785, 936, 1112
TasI	AATT	9 cut(s)	106, 121, 447, 627, 664, 726, 840, 951, 1168
TatI	WGTACW	3 cut(s)	369, 789, 1212
TauI	GCSGC	2 cut(s)	611, 1297
Tru1I	TTAA	1 cut(s)	1046
Tru9I	TTAA	1 cut(s)	1046
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	2 cut(s)	489, 1009
TseI	GCWGC	7 cut(s)	38, 50, 611, 716, 902, 971, 1063
Tsp45I	GTSAC	2 cut(s)	489, 1009
TspDTI	ATGAA	8 cut(s)	99, 223, 753, 849, 859, 1133, 1181, 1358
TspGWI	ACGGA	1 cut(s)	1166
TspRI	CASTG	1 cut(s)	488
Tth111I	GACNNNGTC	1 cut(s)	1015
VpaK11BI	GGWCC	2 cut(s)	170, 587
XapI	RAATTY	3 cut(s)	664, 840, 1168
XceI	RCATGY	2 cut(s)	315, 949
XmnI	GAANNNNTTC	2 cut(s)	840, 1172
XspI	CTAG	2 cut(s)	962, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.