Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010238.1

Orthogroup ID

OG0007070

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3176

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010238.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ggtccttatgtctactacctttatactacatatggatttggaaagggtgagattggacagcttttcattgctggctttggctcctccatgttgtttggaacgattgttggatctctggcagacaaacagggtcgaaagagggcatgcatcacttattgtattacttacatactgagctgcatcaccaaacattctcctcactataatgtcttgatgttgggccgtattttgggaggtatcgccacatcacttctcttttcagcgtttgagtcatggcttgttgctgaacacaacaagaggggttttgaaccacaatggttgtcagtaacattctcaaaggcaatatttcttggtaatggtgttgttgctatcttggctgggttgcttggaaatacacttgttgatacattggctcttgggcctgttgcaccgttcgatgctgcttcgtgctttcttacaattggaatgttcatcattctattcacatggtctgagaattatggtgatccttcagaaagcaaagacttgtttacccaattccgcggtgctgctgtggctattgcttctgatgagaaaattgcgttactgggtgcgatacagtctctgtttgaaggatcaatgtatacgtttgtgttcctctggactcctgctttgagcccaaatgatgaagacattccacatggttttatcttctcaacattcatgttgtcttcaatgcttggaagttcccttgcatctcggttgatggctcgccaatcacctagagtagagagctatatgcagattgtctttgccatttcagctacctctctcctacttcccattgtgaccagcttcttggtaacacctgccggcacaaaaggagggagcatctcgtttgcaggctgtatccagcttcttggattctgtgtctttgaggcttgtgttggactattctggccatcaattatgaagatgaggtcccaatacatacctgaggaggccaggagcaccatcatgaacttcttccgtattccacttaatatttttgtctgcattgtgctgtacaatgttgatgcattccccatgactgttatgttcgggatgtgctccattttcctctttgtcgcatgtttcttgcagaggcgcctcatggcaatttcagacaagcctaagacagaagattgggtaggaatgaaggaaagggacaccgaggcagagccgttaaacctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

404

Amino Acids

44.45

Weight (kDa)

6.14

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49310 AT4G27720
fragaria_vesca	FvH4_7g32400 FvH4_7g32400 FvH4_7g32400 FvH4_7g32400
malus_domestica	MD01G1225400.v1.1 MD07G1295900.v1.1
prunus_persica	Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1
pyrus_communis	pycom01g23380 pycom07g26870
rosa_chinensis	RchiOBHm_Chr1g0381971
rosa_laevigata	RLG00000026197
rosa_multiflora	Rmu_sc0010238.1_g000001 Rmu_sc0017430.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278300
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455800 Rh1BG412900 Rh1CG427800 Rh1DG445200
rosa_wichuraiana	Rw1G041340 Rw1G041510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	856
Acc36I	ACCTGC	1 cut(s)	856
AccB1I	GGYRCC	1 cut(s)	1125
AccI	GTMKAC	2 cut(s)	12, 623
AccII	CGCG	1 cut(s)	543
AciI	CCGC	2 cut(s)	541, 543
AclWI	GGATC	3 cut(s)	118, 500, 622
AcoI	YGGCCR	1 cut(s)	938
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	1126
AfaI	GTAC	1 cut(s)	1046
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	308, 611, 714
AjnI	CCWGG	1 cut(s)	983
AluBI	AGCT	6 cut(s)	61, 177, 774, 803, 834, 895
AluI	AGCT	6 cut(s)	61, 177, 774, 803, 834, 895
Alw21I	GWGCWC	2 cut(s)	992, 1091
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	3 cut(s)	118, 500, 622
AlwNI	CAGNNNCTG	1 cut(s)	604
AoxI	GGCC	4 cut(s)	220, 419, 938, 981
ApeKI	GCWGC	3 cut(s)	177, 440, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	634, 666
Asp700I	GAANNNNTTC	2 cut(s)	672, 1004
AspLEI	GCGC	1 cut(s)	1128
AspS9I	GGNCC	4 cut(s)	2, 220, 419, 960
AsuHPI	GGTGA	4 cut(s)	59, 175, 515, 750
AvaII	GGWCC	2 cut(s)	2, 960
AxyI	CCTNAGG	1 cut(s)	975
BalI	TGGCCA	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	1125
BanII	GRGCYC	1 cut(s)	659
BbsI	GAAGAC	2 cut(s)	675, 702
Bbv12I	GWGCWC	2 cut(s)	992, 1091
BbvI	GCAGC	3 cut(s)	164, 427, 535
BccI	CCATC	3 cut(s)	739, 949, 1001
BceAI	ACGGC	2 cut(s)	207, 1186
BciT130I	CCWGG	1 cut(s)	985
BciVI	GTATCC	1 cut(s)	899
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	1 cut(s)	762
BfoI	RGCGCY	1 cut(s)	1129
BfuAI	ACCTGC	1 cut(s)	856
BfuI	GTATCC	1 cut(s)	899
BisI	GCNGC	3 cut(s)	178, 441, 549
BlsI	GCNGC	3 cut(s)	179, 442, 550
Bme1390I	CCNGG	1 cut(s)	985
Bme18I	GGWCC	2 cut(s)	2, 960
BmgT120I	GGNCC	4 cut(s)	2, 220, 419, 960
BmiI	GGNNCC	3 cut(s)	82, 962, 1127
BmrFI	CCNGG	1 cut(s)	985
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	6 cut(s)	156, 189, 427, 743, 879, 1045
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	2 cut(s)	675, 702
BsaHI	GRCGYC	1 cut(s)	1126
BsaJI	CCNNGG	2 cut(s)	541, 1191
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	1 cut(s)	591
Bse21I	CCTNAGG	1 cut(s)	975
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	985
BseDI	CCNNGG	2 cut(s)	541, 1191
BseGI	GGATG	1 cut(s)	1089
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	164, 483, 966
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	3 cut(s)	73, 186, 992
BseXI	GCAGC	3 cut(s)	164, 427, 535
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	4 cut(s)	222, 421, 940, 983
BshNI	GGYRCC	1 cut(s)	1125
BsiHKAI	GWGCWC	2 cut(s)	992, 1091
BsiSI	CCGG	1 cut(s)	852
BslFI	GGGAC	2 cut(s)	946, 1199
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	606
BsmFI	GGGAC	2 cut(s)	946, 1199
BsmI	GAATGC	1 cut(s)	1058
BsnI	GGCC	4 cut(s)	222, 421, 940, 983
Bsp1286I	GDGCHC	3 cut(s)	659, 992, 1091
Bsp1407I	TGTACA	1 cut(s)	1044
Bsp143I	GATC	3 cut(s)	110, 505, 614
BspACI	CCGC	2 cut(s)	541, 543
BspANI	GGCC	4 cut(s)	222, 421, 940, 983
BspCNI	CTCAG	3 cut(s)	165, 484, 967
BspFNI	CGCG	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	996
BspLI	GGNNCC	3 cut(s)	82, 962, 1127
BspMI	ACCTGC	1 cut(s)	856
BspPI	GGATC	3 cut(s)	118, 500, 622
BspT107I	GGYRCC	1 cut(s)	1125
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	851
BsrGI	TGTACA	1 cut(s)	1044
BsrI	ACTGG	1 cut(s)	591
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	2 cut(s)	541, 1191
BssMI	GATC	3 cut(s)	110, 505, 614
BssNAI	GTATAC	1 cut(s)	624
BssNI	GRCGYC	1 cut(s)	1126
Bst1107I	GTATAC	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	985
Bst4CI	ACNGT	3 cut(s)	432, 600, 1072
BstACI	GRCGYC	1 cut(s)	1126
BstAUI	TGTACA	1 cut(s)	1044
BstC8I	GCNNGC	5 cut(s)	73, 145, 751, 853, 883
BstDEI	CTNAG	4 cut(s)	173, 492, 975, 1152
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	1089
BstFNI	CGCG	1 cut(s)	543
BstH2I	RGCGCY	1 cut(s)	1129
BstHHI	GCGC	1 cut(s)	1128
BstKTI	GATC	3 cut(s)	113, 508, 617
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	3 cut(s)	110, 505, 614
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 554, 800
BstNI	CCWGG	1 cut(s)	985
BstNSI	RCATGY	2 cut(s)	147, 1113
BstSCI	CCNGG	1 cut(s)	983
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	3 cut(s)	164, 427, 535
BstV2I	GAAGAC	2 cut(s)	675, 702
BstX2I	RGATCY	1 cut(s)	110
BstXI	CCANNNNNNTGG	2 cut(s)	838, 899
BstYI	RGATCY	1 cut(s)	110
BstZ17I	GTATAC	1 cut(s)	624
Bsu36I	CCTNAGG	1 cut(s)	975
BsuI	GTATCC	1 cut(s)	899
BsuRI	GGCC	4 cut(s)	222, 421, 940, 983
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	1089
BveI	ACCTGC	1 cut(s)	856
Cac8I	GCNNGC	5 cut(s)	73, 145, 751, 853, 883
CaiI	CAGNNNCTG	1 cut(s)	604
CciI	TCATGA	1 cut(s)	996
CfoI	GCGC	1 cut(s)	1128
Cfr10I	RCCGGY	1 cut(s)	851
Cfr13I	GGNCC	4 cut(s)	2, 220, 419, 960
Cfr42I	CCGCGG	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	1045
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviQI	GTAC	1 cut(s)	1045
DdeI	CTNAG	4 cut(s)	173, 492, 975, 1152
DinI	GGCGCC	1 cut(s)	1127
DpnI	GATC	3 cut(s)	112, 507, 616
DpnII	GATC	3 cut(s)	110, 505, 614
EaeI	YGGCCR	1 cut(s)	938
Eco24I	GRGCYC	1 cut(s)	659
Eco47I	GGWCC	2 cut(s)	2, 960
Eco57I	CTGAAG	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	975
EcoO109I	RGGNCCY	1 cut(s)	960
EcoRII	CCWGG	1 cut(s)	983
EcoT22I	ATGCAT	2 cut(s)	149, 1060
EcoT38I	GRGCYC	1 cut(s)	659
EgeI	GGCGCC	1 cut(s)	1127
EheI	GGCGCC	1 cut(s)	1127
FaqI	GGGAC	2 cut(s)	946, 1199
FauNDI	CATATG	1 cut(s)	31
FblI	GTMKAC	2 cut(s)	12, 623
Fnu4HI	GCNGC	3 cut(s)	178, 441, 549
FokI	GGATG	1 cut(s)	1096
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	3 cut(s)	178, 441, 549
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	1 cut(s)	1127
GluI	GCNGC	3 cut(s)	178, 441, 549
GsaI	CCCAGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	1129
HaeIII	GGCC	4 cut(s)	222, 421, 940, 983
HapII	CCGG	1 cut(s)	852
HhaI	GCGC	1 cut(s)	1128
Hin1I	GRCGYC	1 cut(s)	1126
Hin6I	GCGC	1 cut(s)	1126
HinP1I	GCGC	1 cut(s)	1126
HinfI	GANTC	3 cut(s)	269, 643, 903
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	4 cut(s)	59, 175, 515, 750
Hpy166II	GTNNAC	3 cut(s)	13, 531, 624
Hpy188I	TCNGA	4 cut(s)	493, 514, 568, 1144
Hpy188III	TCNNGA	4 cut(s)	211, 640, 997, 1081
Hpy8I	GTNNAC	3 cut(s)	13, 531, 624
HpyAV	CCTTC	3 cut(s)	519, 605, 1171
HpyCH4III	ACNGT	3 cut(s)	432, 600, 1072
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	9 cut(s)	147, 180, 428, 734, 781, 881, 1035, 1058, 1120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 554, 800
HpyF3I	CTNAG	4 cut(s)	173, 492, 975, 1152
HpySE526I	ACGT	1 cut(s)	626
Hsp92I	GRCGYC	1 cut(s)	1126
HspAI	GCGC	1 cut(s)	1126
KasI	GGCGCC	1 cut(s)	1125
KroI	GCCGGC	1 cut(s)	851
KroNI	GCCGGC	1 cut(s)	853
KspI	CCGCGG	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	110, 505, 614
LmnI	GCTCC	4 cut(s)	86, 867, 987, 1094
Lsp1109I	GCAGC	3 cut(s)	164, 427, 535
LweI	GCATC	6 cut(s)	156, 189, 427, 743, 879, 1045
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	4 cut(s)	325, 582, 826, 841
MalI	GATC	3 cut(s)	112, 507, 616
MboI	GATC	3 cut(s)	110, 505, 614
MboII	GAAGA	6 cut(s)	680, 682, 702, 964, 997, 1172
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	3 cut(s)	659, 992, 1091
MlsI	TGGCCA	1 cut(s)	940
MluCI	AATT	6 cut(s)	459, 496, 536, 576, 945, 1137
MluNI	TGGCCA	1 cut(s)	940
Mly113I	GGCGCC	1 cut(s)	1126
MlyI	GAGTC	2 cut(s)	278, 637
MmeI	TCCRAC	2 cut(s)	88, 907
Mox20I	TGGCCA	1 cut(s)	940
Mph1103I	ATGCAT	2 cut(s)	149, 1060
MroNI	GCCGGC	1 cut(s)	851
MroXI	GAANNNNTTC	2 cut(s)	672, 1004
MscI	TGGCCA	1 cut(s)	940
MseI	TTAA	2 cut(s)	1020, 1205
MslI	CAYNNNNRTG	2 cut(s)	204, 995
Msp20I	TGGCCA	1 cut(s)	940
MspA1I	CMGCKG	1 cut(s)	543
MspI	CCGG	1 cut(s)	852
MspR9I	CCNGG	1 cut(s)	985
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	1058
MvaI	CCWGG	1 cut(s)	985
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	3 cut(s)	374, 554, 800
NaeI	GCCGGC	1 cut(s)	853
NarI	GGCGCC	1 cut(s)	1126
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	3 cut(s)	110, 505, 614
NgoMIV	GCCGGC	1 cut(s)	851
NlaIV	GGNNCC	3 cut(s)	82, 962, 1127
NmuCI	GTSAC	1 cut(s)	826
NsiI	ATGCAT	2 cut(s)	149, 1060
NspI	RCATGY	2 cut(s)	147, 1113
PaeI	GCATGC	1 cut(s)	147
PagI	TCATGA	1 cut(s)	996
PaqCI	CACCTGC	1 cut(s)	856
PctI	GAATGC	1 cut(s)	1058
PdiI	GCCGGC	1 cut(s)	853
PdmI	GAANNNNTTC	2 cut(s)	672, 1004
PfeI	GAWTC	1 cut(s)	903
PkrI	GCNGC	3 cut(s)	179, 442, 550
PleI	GAGTC	2 cut(s)	277, 637
PluTI	GGCGCC	1 cut(s)	1129
PpsI	GAGTC	2 cut(s)	277, 637
PpuMI	RGGWCCY	1 cut(s)	960
Psp5II	RGGWCCY	1 cut(s)	960
Psp6I	CCWGG	1 cut(s)	983
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	983
PspN4I	GGNNCC	3 cut(s)	82, 962, 1127
PspPI	GGNCC	4 cut(s)	2, 220, 419, 960
PspPPI	RGGWCCY	1 cut(s)	960
PstNI	CAGNNNCTG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	1 cut(s)	1046
RsaNI	GTAC	1 cut(s)	1045
RseI	CAYNNNNRTG	2 cut(s)	204, 995
SacII	CCGCGG	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	1020, 1205
SatI	GCNGC	3 cut(s)	178, 441, 549
Sau3AI	GATC	3 cut(s)	110, 505, 614
Sau96I	GGNCC	4 cut(s)	2, 220, 419, 960
SchI	GAGTC	2 cut(s)	278, 637
ScrFI	CCNGG	1 cut(s)	985
SduI	GDGCHC	3 cut(s)	659, 992, 1091
SfaNI	GCATC	6 cut(s)	156, 189, 427, 743, 879, 1045
SfoI	GGCGCC	1 cut(s)	1127
Sfr303I	CCGCGG	1 cut(s)	544
SgrBI	CCGCGG	1 cut(s)	544
SinI	GGWCC	2 cut(s)	2, 960
SmiMI	CAYNNNNRTG	2 cut(s)	204, 995
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	6 cut(s)	459, 496, 536, 576, 945, 1137
SsiI	CCGC	2 cut(s)	541, 543
SspDI	GGCGCC	1 cut(s)	1125
SspI	AATATT	2 cut(s)	345, 1024
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	983
TaaI	ACNGT	3 cut(s)	432, 600, 1072
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	2 cut(s)	133, 435
TasI	AATT	6 cut(s)	459, 496, 536, 576, 945, 1137
TatI	WGTACW	1 cut(s)	1044
TfiI	GAWTC	1 cut(s)	903
Tru1I	TTAA	2 cut(s)	1020, 1205
Tru9I	TTAA	2 cut(s)	1020, 1205
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	3 cut(s)	177, 440, 548
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	7 cut(s)	55, 460, 681, 691, 965, 1013, 1190
TspGWI	ACGGA	1 cut(s)	998
VpaK11BI	GGWCC	2 cut(s)	2, 960
XceI	RCATGY	2 cut(s)	147, 1113
XmiI	GTMKAC	2 cut(s)	12, 623
XmnI	GAANNNNTTC	2 cut(s)	672, 1004
XspI	CTAG	1 cut(s)	762
Zsp2I	ATGCAT	2 cut(s)	149, 1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.