Major facilitator superfamily domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49310 AT4G27720 |
| fragaria_vesca | FvH4_7g32400 FvH4_7g32400 FvH4_7g32400 FvH4_7g32400 |
| malus_domestica | MD01G1225400.v1.1 MD07G1295900.v1.1 |
| prunus_persica | Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1 |
| pyrus_communis | pycom01g23380 pycom07g26870 |
| rosa_chinensis | RchiOBHm_Chr1g0381971 |
| rosa_laevigata | RLG00000026197 |
| rosa_multiflora | Rmu_sc0010238.1_g000001 Rmu_sc0017430.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00278300 |
| rosa_rugosa | Rorug01G0432600 |
| rosa_samantha | Rh1AG455800 Rh1BG412900 Rh1CG427800 Rh1DG445200 |
| rosa_wichuraiana | Rw1G041340 Rw1G041510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 736, 899, 1434 |
| AccI | GTMKAC | 2 cut(s) | 321, 932 |
| AccII | CGCG | 2 cut(s) | 194, 890 |
| AciI | CCGC | 7 cut(s) | 179, 182, 192, 194, 197, 543, 1318 |
| AclWI | GGATC | 2 cut(s) | 17, 809 |
| AcoI | YGGCCR | 2 cut(s) | 189, 1247 |
| AcuI | CTGAAG | 1 cut(s) | 1488 |
| AcyI | GRCGYC | 1 cut(s) | 1435 |
| AfaI | GTAC | 6 cut(s) | 73, 332, 337, 341, 512, 1277 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 448, 849, 850, 1054, 1288 |
| AgsI | TTSAA | 6 cut(s) | 247, 256, 578, 617, 920, 1023 |
| AjnI | CCWGG | 1 cut(s) | 1292 |
| AluBI | AGCT | 8 cut(s) | 17, 202, 370, 486, 1035, 1083, 1112, 1204 |
| AluI | AGCT | 8 cut(s) | 17, 202, 370, 486, 1035, 1083, 1112, 1204 |
| Alw21I | GWGCWC | 4 cut(s) | 204, 794, 1301, 1400 |
| Alw26I | GTCTC | 3 cut(s) | 122, 915, 1427 |
| Alw44I | GTGCAC | 1 cut(s) | 790 |
| AlwI | GGATC | 2 cut(s) | 17, 809 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 628, 913 |
| Ama87I | CYCGRG | 1 cut(s) | 1283 |
| AoxI | GGCC | 5 cut(s) | 189, 439, 728, 1247, 1290 |
| ApaLI | GTGCAC | 1 cut(s) | 790 |
| ApeKI | GCWGC | 5 cut(s) | 14, 486, 749, 857, 1112 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1313 |
| AspA2I | CCTAGG | 1 cut(s) | 1070 |
| AspLEI | GCGC | 1 cut(s) | 1437 |
| AspS9I | GGNCC | 4 cut(s) | 311, 390, 439, 728 |
| AsuC2I | CCSGG | 2 cut(s) | 851, 1048 |
| AsuHPI | GGTGA | 2 cut(s) | 484, 1059 |
| AvaI | CYCGRG | 1 cut(s) | 1283 |
| AvaII | GGWCC | 2 cut(s) | 311, 390 |
| AvrII | CCTAGG | 1 cut(s) | 1070 |
| BaeGI | GKGCMC | 1 cut(s) | 794 |
| BanI | GGYRCC | 3 cut(s) | 736, 899, 1434 |
| BanII | GRGCYC | 2 cut(s) | 204, 968 |
| BbsI | GAAGAC | 3 cut(s) | 18, 244, 1011 |
| Bbv12I | GWGCWC | 4 cut(s) | 204, 794, 1301, 1400 |
| BbvI | GCAGC | 5 cut(s) | 26, 473, 736, 844, 1099 |
| BccI | CCATC | 6 cut(s) | 28, 283, 1048, 1112, 1262, 1310 |
| BceAI | ACGGC | 2 cut(s) | 1234, 1495 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 37 |
| BciT130I | CCWGG | 1 cut(s) | 1294 |
| BciVI | GTATCC | 2 cut(s) | 165, 338 |
| BcnI | CCSGG | 2 cut(s) | 851, 1048 |
| BcoDI | GTCTC | 3 cut(s) | 122, 915, 1427 |
| BfaI | CTAG | 3 cut(s) | 123, 176, 1071 |
| BfoI | RGCGCY | 1 cut(s) | 1438 |
| BfuI | GTATCC | 2 cut(s) | 165, 338 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1226 |
| BglII | AGATCT | 1 cut(s) | 1268 |
| BisI | GCNGC | 8 cut(s) | 15, 180, 192, 195, 487, 750, 858, 1113 |
| BlnI | CCTAGG | 1 cut(s) | 1070 |
| BlpI | GCTNAGC | 1 cut(s) | 203 |
| BlsI | GCNGC | 8 cut(s) | 16, 181, 193, 196, 488, 751, 859, 1114 |
| Bme1390I | CCNGG | 3 cut(s) | 851, 1048, 1294 |
| Bme18I | GGWCC | 2 cut(s) | 311, 390 |
| BmeT110I | CYCGRG | 1 cut(s) | 1283 |
| BmgT120I | GGNCC | 4 cut(s) | 311, 390, 439, 728 |
| BmiI | GGNNCC | 5 cut(s) | 312, 391, 738, 901, 1436 |
| BmrFI | CCNGG | 3 cut(s) | 851, 1048, 1294 |
| BmrI | ACTGGG | 2 cut(s) | 838, 905 |
| BmsI | GCATC | 7 cut(s) | 465, 498, 703, 736, 1052, 1188, 1354 |
| BmuI | ACTGGG | 2 cut(s) | 838, 905 |
| BpiI | GAAGAC | 3 cut(s) | 18, 244, 1011 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 203 |
| BpuMI | CCSGG | 2 cut(s) | 851, 1048 |
| Bsa29I | ATCGAT | 1 cut(s) | 418 |
| BsaAI | YACGTR | 2 cut(s) | 71, 339 |
| BsaHI | GRCGYC | 1 cut(s) | 1435 |
| BsaJI | CCNNGG | 4 cut(s) | 192, 850, 1070, 1284 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 448, 849, 850, 1054, 1288 |
| Bse1I | ACTGG | 5 cut(s) | 305, 723, 844, 900, 1140 |
| Bse3DI | GCAATG | 3 cut(s) | 375, 670, 867 |
| BseBI | CCWGG | 1 cut(s) | 1294 |
| BseCI | ATCGAT | 1 cut(s) | 418 |
| BseDI | CCNNGG | 4 cut(s) | 192, 850, 1070, 1284 |
| BseGI | GGATG | 2 cut(s) | 1043, 1278 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 448, 849, 850, 1054, 1288 |
| BseMI | GCAATG | 3 cut(s) | 375, 670, 867 |
| BseMII | CTCAG | 6 cut(s) | 217, 473, 521, 953, 1122, 1286 |
| BseNI | ACTGG | 5 cut(s) | 305, 723, 844, 900, 1140 |
| BseRI | GAGGAG | 3 cut(s) | 95, 495, 1301 |
| BseSI | GKGCMC | 1 cut(s) | 794 |
| BseXI | GCAGC | 5 cut(s) | 26, 473, 736, 844, 1099 |
| BseYI | CCCAGC | 2 cut(s) | 293, 686 |
| BsgI | GTGCAG | 1 cut(s) | 149 |
| Bsh1236I | CGCG | 2 cut(s) | 194, 890 |
| BshFI | GGCC | 5 cut(s) | 191, 441, 730, 1249, 1292 |
| BshNI | GGYRCC | 3 cut(s) | 736, 899, 1434 |
| BshVI | ATCGAT | 1 cut(s) | 418 |
| BsiHKAI | GWGCWC | 4 cut(s) | 204, 794, 1301, 1400 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1283 |
| BsiSI | CCGG | 2 cut(s) | 850, 1048 |
| BsiWI | CGTACG | 1 cut(s) | 339 |
| BslFI | GGGAC | 2 cut(s) | 311, 1508 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 448, 849, 850, 1054, 1288 |
| BsmAI | GTCTC | 3 cut(s) | 122, 915, 1427 |
| BsmFI | GGGAC | 2 cut(s) | 311, 1508 |
| BsmI | GAATGC | 2 cut(s) | 499, 1320 |
| BsnI | GGCC | 5 cut(s) | 191, 441, 730, 1249, 1292 |
| BsoBI | CYCGRG | 1 cut(s) | 1283 |
| Bsp1286I | GDGCHC | 5 cut(s) | 204, 794, 968, 1301, 1400 |
| Bsp1407I | TGTACA | 1 cut(s) | 330 |
| Bsp143I | GATC | 6 cut(s) | 9, 415, 419, 814, 1268, 1401 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 203 |
| BspACI | CCGC | 7 cut(s) | 179, 182, 192, 194, 197, 543, 1318 |
| BspANI | GGCC | 5 cut(s) | 191, 441, 730, 1249, 1292 |
| BspCNI | CTCAG | 6 cut(s) | 216, 474, 520, 954, 1121, 1285 |
| BspDI | ATCGAT | 1 cut(s) | 418 |
| BspFNI | CGCG | 2 cut(s) | 194, 890 |
| BspHI | TCATGA | 3 cut(s) | 285, 1257, 1305 |
| BspLI | GGNNCC | 5 cut(s) | 312, 391, 738, 901, 1436 |
| BspPI | GGATC | 2 cut(s) | 17, 809 |
| BspT107I | GGYRCC | 3 cut(s) | 736, 899, 1434 |
| BsrDI | GCAATG | 3 cut(s) | 375, 670, 867 |
| BsrGI | TGTACA | 1 cut(s) | 330 |
| BsrI | ACTGG | 5 cut(s) | 305, 723, 844, 900, 1140 |
| BssECI | CCNNGG | 4 cut(s) | 192, 850, 1070, 1284 |
| BssMI | GATC | 6 cut(s) | 9, 415, 419, 814, 1268, 1401 |
| BssNAI | GTATAC | 1 cut(s) | 933 |
| BssNI | GRCGYC | 1 cut(s) | 1435 |
| BssT1I | CCWWGG | 1 cut(s) | 1070 |
| Bst1107I | GTATAC | 1 cut(s) | 933 |
| Bst2UI | CCWGG | 1 cut(s) | 1294 |
| Bst4CI | ACNGT | 5 cut(s) | 335, 624, 909, 1165, 1381 |
| Bst6I | CTCTTC | 1 cut(s) | 1415 |
| BstACI | GRCGYC | 1 cut(s) | 1435 |
| BstAUI | TGTACA | 1 cut(s) | 330 |
| BstBAI | YACGTR | 2 cut(s) | 71, 339 |
| BstC8I | GCNNGC | 2 cut(s) | 454, 1231 |
| BstDEI | CTNAG | 6 cut(s) | 203, 482, 507, 962, 1108, 1272 |
| BstDSI | CCRYGG | 1 cut(s) | 192 |
| BstF5I | GGATG | 2 cut(s) | 1043, 1278 |
| BstFNI | CGCG | 2 cut(s) | 194, 890 |
| BstH2I | RGCGCY | 1 cut(s) | 1438 |
| BstHHI | GCGC | 1 cut(s) | 1437 |
| BstKTI | GATC | 6 cut(s) | 12, 418, 422, 817, 1271, 1404 |
| BstMAI | GTCTC | 3 cut(s) | 122, 915, 1427 |
| BstMBI | GATC | 6 cut(s) | 9, 415, 419, 814, 1268, 1401 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 188, 683, 863, 1109, 1226 |
| BstNI | CCWGG | 1 cut(s) | 1294 |
| BstNSI | RCATGY | 1 cut(s) | 1422 |
| BstSCI | CCNGG | 3 cut(s) | 849, 1046, 1292 |
| BstSLI | GKGCMC | 1 cut(s) | 794 |
| BstSNI | TACGTA | 1 cut(s) | 339 |
| BstUI | CGCG | 2 cut(s) | 194, 890 |
| BstV1I | GCAGC | 5 cut(s) | 26, 473, 736, 844, 1099 |
| BstV2I | GAAGAC | 3 cut(s) | 18, 244, 1011 |
| BstX2I | RGATCY | 2 cut(s) | 814, 1268 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1147, 1208 |
| BstYI | RGATCY | 2 cut(s) | 814, 1268 |
| BstZ17I | GTATAC | 1 cut(s) | 933 |
| Bsu15I | ATCGAT | 1 cut(s) | 418 |
| BsuI | GTATCC | 2 cut(s) | 165, 338 |
| BsuRI | GGCC | 5 cut(s) | 191, 441, 730, 1249, 1292 |
| BsuTUI | ATCGAT | 1 cut(s) | 418 |
| BtgI | CCRYGG | 1 cut(s) | 192 |
| BtsCI | GGATG | 2 cut(s) | 1043, 1278 |
| BtsIMutI | CAGTG | 3 cut(s) | 629, 716, 1161 |
| Cac8I | GCNNGC | 2 cut(s) | 454, 1231 |
| CaiI | CAGNNNCTG | 2 cut(s) | 628, 913 |
| CciI | TCATGA | 3 cut(s) | 285, 1257, 1305 |
| CfoI | GCGC | 1 cut(s) | 1437 |
| Cfr13I | GGNCC | 4 cut(s) | 311, 390, 439, 728 |
| Cfr42I | CCGCGG | 1 cut(s) | 195 |
| ClaI | ATCGAT | 1 cut(s) | 418 |
| Csp6I | GTAC | 6 cut(s) | 72, 331, 336, 340, 511, 1276 |
| CviQI | GTAC | 6 cut(s) | 72, 331, 336, 340, 511, 1276 |
| DdeI | CTNAG | 6 cut(s) | 203, 482, 507, 962, 1108, 1272 |
| DinI | GGCGCC | 1 cut(s) | 1436 |
| DpnI | GATC | 6 cut(s) | 11, 417, 421, 816, 1270, 1403 |
| DpnII | GATC | 6 cut(s) | 9, 415, 419, 814, 1268, 1401 |
| EaeI | YGGCCR | 2 cut(s) | 189, 1247 |
| Eam1104I | CTCTTC | 1 cut(s) | 1415 |
| EarI | CTCTTC | 1 cut(s) | 1415 |
| EciI | GGCGGA | 1 cut(s) | 212 |
| Ecl136II | GAGCTC | 1 cut(s) | 202 |
| Eco105I | TACGTA | 1 cut(s) | 339 |
| Eco130I | CCWWGG | 1 cut(s) | 1070 |
| Eco24I | GRGCYC | 2 cut(s) | 204, 968 |
| Eco47I | GGWCC | 2 cut(s) | 311, 390 |
| Eco53kI | GAGCTC | 1 cut(s) | 202 |
| Eco57I | CTGAAG | 1 cut(s) | 1488 |
| Eco88I | CYCGRG | 1 cut(s) | 1283 |
| EcoICRI | GAGCTC | 1 cut(s) | 202 |
| EcoO109I | RGGNCCY | 2 cut(s) | 311, 390 |
| EcoRII | CCWGG | 1 cut(s) | 1292 |
| EcoT14I | CCWWGG | 1 cut(s) | 1070 |
| EcoT38I | GRGCYC | 2 cut(s) | 204, 968 |
| EgeI | GGCGCC | 1 cut(s) | 1436 |
| EheI | GGCGCC | 1 cut(s) | 1436 |
| ErhI | CCWWGG | 1 cut(s) | 1070 |
| FaqI | GGGAC | 2 cut(s) | 311, 1508 |
| FblI | GTMKAC | 2 cut(s) | 321, 932 |
| Fnu4HI | GCNGC | 8 cut(s) | 15, 180, 192, 195, 487, 750, 858, 1113 |
| FokI | GGATG | 2 cut(s) | 1030, 1265 |
| FriOI | GRGCYC | 2 cut(s) | 204, 968 |
| Fsp4HI | GCNGC | 8 cut(s) | 15, 180, 192, 195, 487, 750, 858, 1113 |
| FspBI | CTAG | 3 cut(s) | 123, 176, 1071 |
| GlaI | GCGC | 1 cut(s) | 1436 |
| GluI | GCNGC | 8 cut(s) | 15, 180, 192, 195, 487, 750, 858, 1113 |
| GsaI | CCCAGC | 2 cut(s) | 297, 690 |
| HaeII | RGCGCY | 1 cut(s) | 1438 |
| HaeIII | GGCC | 5 cut(s) | 191, 441, 730, 1249, 1292 |
| HapII | CCGG | 2 cut(s) | 850, 1048 |
| HhaI | GCGC | 1 cut(s) | 1437 |
| Hin1I | GRCGYC | 1 cut(s) | 1435 |
| Hin6I | GCGC | 1 cut(s) | 1435 |
| HinP1I | GCGC | 1 cut(s) | 1435 |
| HinfI | GANTC | 4 cut(s) | 225, 578, 952, 1212 |
| HpaII | CCGG | 2 cut(s) | 850, 1048 |
| HphI | GGTGA | 2 cut(s) | 484, 1059 |
| Hpy166II | GTNNAC | 7 cut(s) | 240, 277, 322, 792, 840, 933, 951 |
| Hpy188I | TCNGA | 5 cut(s) | 365, 823, 877, 963, 1453 |
| Hpy188III | TCNNGA | 7 cut(s) | 123, 169, 256, 286, 1078, 1258, 1306 |
| Hpy8I | GTNNAC | 7 cut(s) | 240, 277, 322, 792, 840, 933, 951 |
| HpyAV | CCTTC | 5 cut(s) | 751, 828, 914, 1167, 1480 |
| HpyCH4III | ACNGT | 5 cut(s) | 335, 624, 909, 1165, 1381 |
| HpyCH4IV | ACGT | 3 cut(s) | 70, 249, 338 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 188, 683, 863, 1109, 1226 |
| HpyF3I | CTNAG | 6 cut(s) | 203, 482, 507, 962, 1108, 1272 |
| HpySE526I | ACGT | 3 cut(s) | 70, 249, 338 |
| Hsp92I | GRCGYC | 1 cut(s) | 1435 |
| HspAI | GCGC | 1 cut(s) | 1435 |
| KasI | GGCGCC | 1 cut(s) | 1434 |
| KspI | CCGCGG | 1 cut(s) | 195 |
| Kzo9I | GATC | 6 cut(s) | 9, 415, 419, 814, 1268, 1401 |
| LmnI | GCTCC | 5 cut(s) | 22, 199, 1040, 1176, 1296 |
| Lsp1109I | GCAGC | 5 cut(s) | 26, 473, 736, 844, 1099 |
| LweI | GCATC | 7 cut(s) | 465, 498, 703, 736, 1052, 1188, 1354 |
| MaeI | CTAG | 3 cut(s) | 123, 176, 1071 |
| MaeII | ACGT | 3 cut(s) | 70, 249, 338 |
| MaeIII | GTNAC | 3 cut(s) | 136, 891, 1135 |
| MalI | GATC | 6 cut(s) | 11, 417, 421, 816, 1270, 1403 |
| MboI | GATC | 6 cut(s) | 9, 415, 419, 814, 1268, 1401 |
| MboII | GAAGA | 9 cut(s) | 18, 57, 244, 1011, 1273, 1306, 1396, 1402, 1481 |
| MfeI | CAATTG | 2 cut(s) | 411, 768 |
| MflI | RGATCY | 2 cut(s) | 814, 1268 |
| MhlI | GDGCHC | 5 cut(s) | 204, 794, 968, 1301, 1400 |
| MluCI | AATT | 5 cut(s) | 262, 411, 633, 768, 805 |
| Mly113I | GGCGCC | 1 cut(s) | 1435 |
| MlyI | GAGTC | 1 cut(s) | 946 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1313 |
| MseI | TTAA | 1 cut(s) | 1514 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1010, 1262, 1304 |
| MspA1I | CMGCKG | 2 cut(s) | 194, 1112 |
| MspI | CCGG | 2 cut(s) | 850, 1048 |
| MspR9I | CCNGG | 3 cut(s) | 851, 1048, 1294 |
| MunI | CAATTG | 2 cut(s) | 411, 768 |
| Mva1269I | GAATGC | 2 cut(s) | 499, 1320 |
| MvaI | CCWGG | 1 cut(s) | 1294 |
| MvnI | CGCG | 2 cut(s) | 194, 890 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 188, 683, 863, 1109, 1226 |
| NarI | GGCGCC | 1 cut(s) | 1435 |
| NciI | CCSGG | 2 cut(s) | 851, 1048 |
| NdeII | GATC | 6 cut(s) | 9, 415, 419, 814, 1268, 1401 |
| NlaIV | GGNNCC | 5 cut(s) | 312, 391, 738, 901, 1436 |
| NmuCI | GTSAC | 1 cut(s) | 1135 |
| NspI | RCATGY | 1 cut(s) | 1422 |
| PagI | TCATGA | 3 cut(s) | 285, 1257, 1305 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 354 |
| PctI | GAATGC | 2 cut(s) | 499, 1320 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1313 |
| PfeI | GAWTC | 3 cut(s) | 225, 578, 1212 |
| Pfl23II | CGTACG | 1 cut(s) | 339 |
| PkrI | GCNGC | 8 cut(s) | 16, 181, 193, 196, 488, 751, 859, 1114 |
| PleI | GAGTC | 1 cut(s) | 946 |
| PluTI | GGCGCC | 1 cut(s) | 1438 |
| PpsI | GAGTC | 1 cut(s) | 946 |
| Ppu21I | YACGTR | 2 cut(s) | 71, 339 |
| PpuMI | RGGWCCY | 2 cut(s) | 311, 390 |
| Psp124BI | GAGCTC | 1 cut(s) | 204 |
| Psp5II | RGGWCCY | 2 cut(s) | 311, 390 |
| Psp6I | CCWGG | 1 cut(s) | 1292 |
| PspFI | CCCAGC | 2 cut(s) | 293, 686 |
| PspGI | CCWGG | 1 cut(s) | 1292 |
| PspLI | CGTACG | 1 cut(s) | 339 |
| PspN4I | GGNNCC | 5 cut(s) | 312, 391, 738, 901, 1436 |
| PspPI | GGNCC | 4 cut(s) | 311, 390, 439, 728 |
| PspPPI | RGGWCCY | 2 cut(s) | 311, 390 |
| PstNI | CAGNNNCTG | 2 cut(s) | 628, 913 |
| PsuI | RGATCY | 2 cut(s) | 814, 1268 |
| PvuII | CAGCTG | 1 cut(s) | 1112 |
| RsaI | GTAC | 6 cut(s) | 73, 332, 337, 341, 512, 1277 |
| RsaNI | GTAC | 6 cut(s) | 72, 331, 336, 340, 511, 1276 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1010, 1262, 1304 |
| SacI | GAGCTC | 1 cut(s) | 204 |
| SacII | CCGCGG | 1 cut(s) | 195 |
| SaqAI | TTAA | 1 cut(s) | 1514 |
| SatI | GCNGC | 8 cut(s) | 15, 180, 192, 195, 487, 750, 858, 1113 |
| Sau3AI | GATC | 6 cut(s) | 9, 415, 419, 814, 1268, 1401 |
| Sau96I | GGNCC | 4 cut(s) | 311, 390, 439, 728 |
| SchI | GAGTC | 1 cut(s) | 946 |
| ScrFI | CCNGG | 3 cut(s) | 851, 1048, 1294 |
| SduI | GDGCHC | 5 cut(s) | 204, 794, 968, 1301, 1400 |
| SfaNI | GCATC | 7 cut(s) | 465, 498, 703, 736, 1052, 1188, 1354 |
| SfoI | GGCGCC | 1 cut(s) | 1436 |
| Sfr303I | CCGCGG | 1 cut(s) | 195 |
| SgrBI | CCGCGG | 1 cut(s) | 195 |
| SinI | GGWCC | 2 cut(s) | 311, 390 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1010, 1262, 1304 |
| SnaBI | TACGTA | 1 cut(s) | 339 |
| Sse9I | AATT | 5 cut(s) | 262, 411, 633, 768, 805 |
| SsiI | CCGC | 7 cut(s) | 179, 182, 192, 194, 197, 543, 1318 |
| SspDI | GGCGCC | 1 cut(s) | 1434 |
| SspI | AATATT | 1 cut(s) | 654 |
| SspMI | CTAG | 3 cut(s) | 123, 176, 1071 |
| SstI | GAGCTC | 1 cut(s) | 204 |
| StyD4I | CCNGG | 3 cut(s) | 849, 1046, 1292 |
| StyI | CCWWGG | 1 cut(s) | 1070 |
| TaaI | ACNGT | 5 cut(s) | 335, 624, 909, 1165, 1381 |
| TaiI | ACGT | 3 cut(s) | 73, 252, 341 |
| TaqI | TCGA | 5 cut(s) | 418, 744, 1060, 1077, 1400 |
| TaqII | GACCGA | 1 cut(s) | 237 |
| TasI | AATT | 5 cut(s) | 262, 411, 633, 768, 805 |
| TatI | WGTACW | 3 cut(s) | 330, 510, 1275 |
| TauI | GCSGC | 3 cut(s) | 182, 194, 197 |
| TfiI | GAWTC | 3 cut(s) | 225, 578, 1212 |
| Tru1I | TTAA | 1 cut(s) | 1514 |
| Tru9I | TTAA | 1 cut(s) | 1514 |
| TscAI | CASTG | 3 cut(s) | 629, 723, 1168 |
| TseFI | GTSAC | 1 cut(s) | 1135 |
| TseI | GCWGC | 5 cut(s) | 14, 486, 749, 857, 1112 |
| Tsp45I | GTSAC | 1 cut(s) | 1135 |
| TspDTI | ATGAA | 6 cut(s) | 364, 744, 1000, 1274, 1322, 1499 |
| TspGWI | ACGGA | 2 cut(s) | 357, 363 |
| TspRI | CASTG | 3 cut(s) | 629, 723, 1168 |
| VneI | GTGCAC | 1 cut(s) | 790 |
| VpaK11BI | GGWCC | 2 cut(s) | 311, 390 |
| XbaI | TCTAGA | 1 cut(s) | 122 |
| XceI | RCATGY | 1 cut(s) | 1422 |
| XmaJI | CCTAGG | 1 cut(s) | 1070 |
| XmiI | GTMKAC | 2 cut(s) | 321, 932 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1313 |
| XspI | CTAG | 3 cut(s) | 123, 176, 1071 |