Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007070

Physical Location & Seq

Genomic Coordinates Forward (+)

13830827 .. 13833814

Gene Structure 2988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGAGATTTTCTACTACTTGGTGTTTGGGGTTTTGGGTCTCGTCGTCGCGGCGTTGGAGCTTAGCAAGAACAACAAGGATCGAATCAACACTTCTTCAGCTTTCAATTCTTTCAAGAACAATTATCTCCTTGTCTATTCGCTCATGATGGCGGGTGATTGGTTGCAGGGTCCATATGTGTACTATCTTTATAGTACTTATGGATTTGGTAAAGGGGACATTGGACAGCTTTTCATTGCTGGTTTTGGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAGCCGACAAACAGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCTGCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTCTTGGGAGGCATTGCTACTTCCCTTCTGTTTTCGTCATTTGAATCATGGCTAGTTGCTGAGCACAATAAGAGGGGCTTTGAGCAGCAATGGCTGTCTGTGACATTTTCAAAGGCAGTGTTTTTTGGCAACGGTCTCGTTGCAATTATCGCTGGATTGTTTGGGAACCTGCTTGTTGATACCTTCTCTCTTGGGCCTGTTGCGCCATTTGACGCTGCTGCATGCTTTCTTACTATTGGAATGGCTGTCATTCTATCATCATGGACAGAAAACTATGGAGATCCATCAGAAAACAAGGACTTGCTTACCCAGTTCAGAGGTGCTGCAGTGGCCATTGCCTCTGATGAGAAGATAGCACTATTGGGTGCTATCCAGTCGCTCTTTGAAGGATCTATGTATACTTTTGTATTCCTCTGGACTCCTGCTCTAAGTCCGAACGATGAGGAGATTCCCCATGGTTTCATTTTTGCAACATTTATGCTAGCTTCGATGCTAGGCAGTTCCCTTGCATCTCGTCTGTTGTCTCGTTCAACTCCCAAAGTAGAGAGCTACATGCAGATTGTTTTCCTAGTTTCCGGTGCTGCACTATTGCTTCCAATATTAATGACTTTGTTCATAGCACCTTCCAAGGTGAAAGGTGGAGGAATCTCTTTCTCGGGTTGCTTTCAGCTCCTTGGGTTCTGTATATTCGAGGCGTGTGTAGGACTGTTTTGGCCATCCATAATGAAGATGAGATCCCAATACATCCCAGAAGAAGCCAGAAGCACAATAATGAACTTTTTCCGCATTCCTCTGAATATCTTTGTCTGCGTTGTATTGTACAATGTAAATGCATTCCCTATCACGGTCATGTTTGGAATGTGCTCGATCTTCCTCTTTGTTGCAAGTCTCCTACAAAGGCGGCTCATGATGATTGTTGACAAACCAAAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAGATCCCCTCAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

460

Amino Acids

50.89

Weight (kDa)

6.82

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_5	PF05631	4 - 358	5e-183	Sugar-tranasporters, 12 TM
MFS_1	PF07690	43 - 393	4e-18	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49310 AT4G27720
fragaria_vesca	FvH4_7g32400 FvH4_7g32400 FvH4_7g32400 FvH4_7g32400
malus_domestica	MD01G1225400.v1.1 MD07G1295900.v1.1
prunus_persica	Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1
pyrus_communis	pycom01g23380 pycom07g26870
rosa_chinensis	RchiOBHm_Chr1g0381971
rosa_laevigata	RLG00000026197
rosa_multiflora	Rmu_sc0010238.1_g000001 Rmu_sc0017430.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278300
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455800 Rh1BG412900 Rh1CG427800 Rh1DG445200
rosa_wichuraiana	Rw1G041340 Rw1G041510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	570
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	791
AccII	CGCG	1 cut(s)	50
AciI	CCGC	4 cut(s)	50, 152, 1177, 1294
AclWI	GGATC	5 cut(s)	87, 668, 790, 1122, 1361
AcoI	YGGCCR	2 cut(s)	723, 1106
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	4 cut(s)	182, 196, 268, 1214
AfiI	CCNNNNNNNGG	3 cut(s)	276, 397, 1237
AgsI	TTSAA	7 cut(s)	106, 115, 437, 504, 779, 924, 1346
AluBI	AGCT	7 cut(s)	61, 101, 229, 345, 878, 942, 1063
AluI	AGCT	7 cut(s)	61, 101, 229, 345, 878, 942, 1063
Alw21I	GWGCWC	2 cut(s)	459, 1259
Alw26I	GTCTC	5 cut(s)	44, 285, 533, 921, 1286
AlwI	GGATC	5 cut(s)	87, 668, 790, 1122, 1361
Ama87I	CYCGRG	1 cut(s)	1048
AoxI	GGCC	4 cut(s)	388, 587, 723, 1106
ApeKI	GCWGC	6 cut(s)	345, 478, 608, 611, 716, 974
AseI	ATTAAT	1 cut(s)	995
Asp700I	GAANNNNTTC	1 cut(s)	1172
Asp718I	GGTACC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	2 cut(s)	170, 587
AsuHPI	GGTGA	3 cut(s)	167, 343, 1036
AsuNHI	GCTAGC	1 cut(s)	874
AvaI	CYCGRG	1 cut(s)	1048
AvaII	GGWCC	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BalI	TGGCCA	2 cut(s)	725, 1108
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	2 cut(s)	459, 1259
BbvI	GCAGC	6 cut(s)	332, 490, 595, 598, 703, 961
BccI	CCATC	5 cut(s)	142, 278, 376, 685, 1117
BceAI	ACGGC	1 cut(s)	375
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BcoDI	GTCTC	5 cut(s)	44, 285, 533, 921, 1286
BfaI	CTAG	5 cut(s)	284, 446, 875, 887, 962
BfmI	CTRYAG	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	570
BisI	GCNGC	8 cut(s)	51, 346, 479, 609, 612, 717, 975, 1295
BlpI	GCTNAGC	2 cut(s)	62, 453
BlsI	GCNGC	8 cut(s)	52, 347, 480, 610, 613, 718, 976, 1296
BmcAI	AGTACT	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	1048
BmgT120I	GGNCC	2 cut(s)	170, 587
BmiI	GGNNCC	4 cut(s)	171, 250, 268, 560
BmrI	ACTGGG	1 cut(s)	697
BmsI	GCATC	3 cut(s)	357, 873, 911
BmtI	GCTAGC	1 cut(s)	878
BmuI	ACTGGG	1 cut(s)	697
Bpu1102I	GCTNAGC	2 cut(s)	62, 453
BsaI	GGTCTC	3 cut(s)	44, 285, 533
BsaJI	CCNNGG	3 cut(s)	847, 1020, 1066
BsaWI	WCCGGW	1 cut(s)	968
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 397, 1237
Bse1I	ACTGG	3 cut(s)	703, 766, 1337
Bse3DI	GCAATG	4 cut(s)	234, 405, 488, 726
BseDI	CCNNGG	3 cut(s)	847, 1020, 1066
BseGI	GGATG	2 cut(s)	1109, 1137
BseLI	CCNNNNNNNGG	3 cut(s)	276, 397, 1237
BseMI	GCAATG	4 cut(s)	234, 405, 488, 726
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	703, 766, 1337
BseRI	GAGGAG	2 cut(s)	354, 851
BseXI	GCAGC	6 cut(s)	332, 490, 595, 598, 703, 961
BsgI	GTGCAG	1 cut(s)	960
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	4 cut(s)	390, 589, 725, 1108
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	2 cut(s)	459, 1259
BsiHKCI	CYCGRG	1 cut(s)	1048
BsiSI	CCGG	1 cut(s)	969
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	276, 397, 1237
BsmAI	GTCTC	5 cut(s)	44, 285, 533, 921, 1286
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	3 cut(s)	358, 1179, 1226
BsnI	GGCC	4 cut(s)	390, 589, 725, 1108
Bso31I	GGTCTC	3 cut(s)	44, 285, 533
BsoBI	CYCGRG	1 cut(s)	1048
Bsp1286I	GDGCHC	2 cut(s)	459, 1259
Bsp1407I	TGTACA	1 cut(s)	1212
Bsp143I	GATC	6 cut(s)	79, 673, 782, 1127, 1260, 1366
Bsp1720I	GCTNAGC	2 cut(s)	62, 453
Bsp19I	CCATGG	1 cut(s)	847
BspACI	CCGC	4 cut(s)	50, 152, 1177, 1294
BspANI	GGCC	4 cut(s)	390, 589, 725, 1108
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	144, 1299
BspLI	GGNNCC	4 cut(s)	171, 250, 268, 560
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	570
BspOI	GCTAGC	1 cut(s)	878
BspPI	GGATC	5 cut(s)	87, 668, 790, 1122, 1361
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	3 cut(s)	44, 285, 533
BsrDI	GCAATG	4 cut(s)	234, 405, 488, 726
BsrGI	TGTACA	1 cut(s)	1212
BsrI	ACTGG	3 cut(s)	703, 766, 1337
BssECI	CCNNGG	3 cut(s)	847, 1020, 1066
BssMI	GATC	6 cut(s)	79, 673, 782, 1127, 1260, 1366
BssNAI	GTATAC	1 cut(s)	792
BssT1I	CCWWGG	3 cut(s)	847, 1020, 1066
Bst1107I	GTATAC	1 cut(s)	792
Bst4CI	ACNGT	3 cut(s)	527, 1101, 1240
BstAUI	TGTACA	1 cut(s)	1212
BstC8I	GCNNGC	2 cut(s)	616, 876
BstDEI	CTNAG	3 cut(s)	62, 453, 821
BstDSI	CCRYGG	1 cut(s)	847
BstF5I	GGATG	2 cut(s)	1109, 1137
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	6 cut(s)	82, 676, 785, 1130, 1263, 1369
BstMAI	GTCTC	5 cut(s)	44, 285, 533, 921, 1286
BstMBI	GATC	6 cut(s)	79, 673, 782, 1127, 1260, 1366
BstMWI	GCNNNNNNNGC	4 cut(s)	484, 542, 595, 722
BstNSI	RCATGY	3 cut(s)	315, 618, 949
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	6 cut(s)	332, 490, 595, 598, 703, 961
BstX2I	RGATCY	4 cut(s)	673, 782, 1127, 1366
BstYI	RGATCY	4 cut(s)	673, 782, 1127, 1366
BstZ17I	GTATAC	1 cut(s)	792
BsuRI	GGCC	4 cut(s)	390, 589, 725, 1108
BtgI	CCRYGG	1 cut(s)	847
BtsCI	GGATG	2 cut(s)	1109, 1137
BtsI	GCAGTG	2 cut(s)	516, 726
BtsIMutI	CAGTG	2 cut(s)	516, 726
BveI	ACCTGC	1 cut(s)	570
Cac8I	GCNNGC	2 cut(s)	616, 876
CciI	TCATGA	2 cut(s)	144, 1299
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	170, 587
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	4 cut(s)	181, 195, 267, 1213
CviAII	CATG	9 cut(s)	145, 312, 441, 615, 654, 848, 946, 1243, 1300
CviQI	GTAC	4 cut(s)	181, 195, 267, 1213
DdeI	CTNAG	3 cut(s)	62, 453, 821
DpnI	GATC	6 cut(s)	81, 675, 784, 1129, 1262, 1368
DpnII	GATC	6 cut(s)	79, 673, 782, 1127, 1260, 1366
EaeI	YGGCCR	2 cut(s)	723, 1106
Eco130I	CCWWGG	3 cut(s)	847, 1020, 1066
Eco31I	GGTCTC	3 cut(s)	44, 285, 533
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	1048
EcoT14I	CCWWGG	3 cut(s)	847, 1020, 1066
EcoT22I	ATGCAT	1 cut(s)	1228
ErhI	CCWWGG	3 cut(s)	847, 1020, 1066
FaeI	CATG	9 cut(s)	148, 315, 444, 618, 657, 851, 949, 1246, 1303
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	9 cut(s)	144, 311, 440, 614, 653, 847, 945, 1242, 1299
FauI	CCCGC	1 cut(s)	145
FauNDI	CATATG	2 cut(s)	175, 1379
FblI	GTMKAC	1 cut(s)	791
Fnu4HI	GCNGC	8 cut(s)	51, 346, 479, 609, 612, 717, 975, 1295
FokI	GGATG	2 cut(s)	1096, 1124
Fsp4HI	GCNGC	8 cut(s)	51, 346, 479, 609, 612, 717, 975, 1295
FspBI	CTAG	5 cut(s)	284, 446, 875, 887, 962
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	8 cut(s)	51, 346, 479, 609, 612, 717, 975, 1295
HaeIII	GGCC	4 cut(s)	390, 589, 725, 1108
HapII	CCGG	1 cut(s)	969
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	9 cut(s)	148, 315, 444, 618, 657, 851, 949, 1246, 1303
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	1312
HindII	GTYRAC	1 cut(s)	1312
HinfI	GANTC	5 cut(s)	84, 437, 811, 841, 1038
HpaII	CCGG	1 cut(s)	969
HphI	GGTGA	3 cut(s)	167, 343, 1036
Hpy166II	GTNNAC	3 cut(s)	181, 792, 1312
Hpy188I	TCNGA	5 cut(s)	682, 710, 736, 828, 1188
Hpy188III	TCNNGA	4 cut(s)	115, 145, 808, 1300
Hpy8I	GTNNAC	3 cut(s)	181, 792, 1312
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	4 cut(s)	428, 586, 773, 1026
HpyCH4III	ACNGT	3 cut(s)	527, 1101, 1240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	484, 542, 595, 722
HpyF3I	CTNAG	3 cut(s)	62, 453, 821
Hsp92II	CATG	9 cut(s)	148, 315, 444, 618, 657, 851, 949, 1246, 1303
HspAI	GCGC	1 cut(s)	596
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	6 cut(s)	79, 673, 782, 1127, 1260, 1366
LmnI	GCTCC	2 cut(s)	58, 1068
Lsp1109I	GCAGC	6 cut(s)	332, 490, 595, 598, 703, 961
LweI	GCATC	3 cut(s)	357, 873, 911
MaeI	CTAG	5 cut(s)	284, 446, 875, 887, 962
MaeIII	GTNAC	2 cut(s)	316, 493
MalI	GATC	6 cut(s)	81, 675, 784, 1129, 1262, 1368
MboI	GATC	6 cut(s)	79, 673, 782, 1127, 1260, 1366
MboII	GAAGA	8 cut(s)	87, 754, 1132, 1157, 1255, 1358, 1373, 1376
MflI	RGATCY	4 cut(s)	673, 782, 1127, 1366
MhlI	GDGCHC	2 cut(s)	459, 1259
MlsI	TGGCCA	2 cut(s)	725, 1108
MluCI	AATT	3 cut(s)	106, 121, 537
MluNI	TGGCCA	2 cut(s)	725, 1108
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	36
Mox20I	TGGCCA	2 cut(s)	725, 1108
Mph1103I	ATGCAT	1 cut(s)	1228
MroXI	GAANNNNTTC	1 cut(s)	1172
MscI	TGGCCA	2 cut(s)	725, 1108
MseI	TTAA	1 cut(s)	995
MslI	CAYNNNNRTG	2 cut(s)	1163, 1241
Msp20I	TGGCCA	2 cut(s)	725, 1108
MspI	CCGG	1 cut(s)	969
Mva1269I	GAATGC	3 cut(s)	358, 1179, 1226
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	4 cut(s)	484, 542, 595, 722
NcoI	CCATGG	1 cut(s)	847
NdeI	CATATG	2 cut(s)	175, 1379
NdeII	GATC	6 cut(s)	79, 673, 782, 1127, 1260, 1366
NheI	GCTAGC	1 cut(s)	874
NlaIII	CATG	9 cut(s)	148, 315, 444, 618, 657, 851, 949, 1246, 1303
NlaIV	GGNNCC	4 cut(s)	171, 250, 268, 560
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	1228
NspI	RCATGY	3 cut(s)	315, 618, 949
PaeI	GCATGC	1 cut(s)	618
PagI	TCATGA	2 cut(s)	144, 1299
PctI	GAATGC	3 cut(s)	358, 1179, 1226
PdmI	GAANNNNTTC	1 cut(s)	1172
PfeI	GAWTC	4 cut(s)	84, 437, 841, 1038
PkrI	GCNGC	8 cut(s)	52, 347, 480, 610, 613, 718, 976, 1296
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
PshBI	ATTAAT	1 cut(s)	995
PspN4I	GGNNCC	4 cut(s)	171, 250, 268, 560
PspPI	GGNCC	2 cut(s)	170, 587
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	4 cut(s)	673, 782, 1127, 1366
RsaI	GTAC	4 cut(s)	182, 196, 268, 1214
RsaNI	GTAC	4 cut(s)	181, 195, 267, 1213
RseI	CAYNNNNRTG	2 cut(s)	1163, 1241
SaqAI	TTAA	1 cut(s)	995
SatI	GCNGC	8 cut(s)	51, 346, 479, 609, 612, 717, 975, 1295
Sau3AI	GATC	6 cut(s)	79, 673, 782, 1127, 1260, 1366
Sau96I	GGNCC	2 cut(s)	170, 587
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	1 cut(s)	805
SduI	GDGCHC	2 cut(s)	459, 1259
SfaNI	GCATC	3 cut(s)	357, 873, 911
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	1163, 1241
SphI	GCATGC	1 cut(s)	618
Sse9I	AATT	3 cut(s)	106, 121, 537
SsiI	CCGC	4 cut(s)	50, 152, 1177, 1294
SspI	AATATT	1 cut(s)	993
SspMI	CTAG	5 cut(s)	284, 446, 875, 887, 962
StyI	CCWWGG	3 cut(s)	847, 1020, 1066
TaaI	ACNGT	3 cut(s)	527, 1101, 1240
TaqI	TCGA	4 cut(s)	82, 881, 1083, 1259
TasI	AATT	3 cut(s)	106, 121, 537
TatI	WGTACW	3 cut(s)	180, 194, 1212
TauI	GCSGC	2 cut(s)	53, 1297
TfiI	GAWTC	4 cut(s)	84, 437, 841, 1038
Tru1I	TTAA	1 cut(s)	995
Tru9I	TTAA	1 cut(s)	995
TscAI	CASTG	2 cut(s)	516, 726
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	6 cut(s)	345, 478, 608, 611, 716, 974
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	5 cut(s)	223, 844, 997, 1133, 1181
TspRI	CASTG	2 cut(s)	516, 726
VpaK11BI	GGWCC	1 cut(s)	170
VspI	ATTAAT	1 cut(s)	995
XceI	RCATGY	3 cut(s)	315, 618, 949
XmiI	GTMKAC	1 cut(s)	791
XmnI	GAANNNNTTC	1 cut(s)	1172
XspI	CTAG	5 cut(s)	284, 446, 875, 887, 962
ZrmI	AGTACT	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.