Rh1CG427800
ERF Family

Major facilitator superfamily domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
68568259 .. 68572098
3840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG427800.1

Sequence Viewer

Length: 1230 bp
ATGGAGGCCTTCTACTACCTCGTCTTCGGAGTACTGGCCGTGGTGGTCGCCGGCGCCGAGCTCAGCAAAAGCAACAAGGACCGAATCAACACCTCCTCGGCTTTCAATTCCTTCAAGAACAATTACCTCGTCATTTACTCGCTCATGATGGCTGGGGACTGGTTGCAGGGTCCTTATGTCTACTACCTTTATACTACATATGGATTTGGAAAGGGGGAGATTGGACAGCTTTTCATTGCTGGCTTTGGCTCCTCCATGTTGTTTGGAACGATTGTTGGATCTCTGGCAGACAAACAGGGTCGAAAGAGGGCATGCATCACTTATTGTATTACTTACATACTGAGCTGCATCACCAAACATTCTCCTCACTATAATGTCTTGATGTTGGGCCGTATTTTGGGAGGTATCGCCACATCACTTCTCTTTTCAGCGTTTGAGTCATGGCTTGTTGCTGAACACAACAAGAGGGGTTTTGAACCACAATGGTTGTCAGTAACATTCTCAAAGGCAATATTTCTTGGTAATGGTGTTGTTGCTATCTTGGCTGGGTTGCTTGGAAATACACTTGTTGATACATTGGCTCTTGGGCCTGTTGCACCGTTCGATGCTGCTTCGTGCTTTCTTACAATTGGAATGTTCATCATTCTATTCACATGGTCTGAGAATTATGGTGATCCTTCAGAAAGCAAAGACTTGTTTACCCAATTCCGCGGTGCTGCTGTGGCTATTGCTTCTGATGAGAAAATTGCGTTACTGGGTGCGATACAGTCTCTGTTTGAAGGATCAATGTATACGTTTGTGTTCCTCTGGACTCCTGCTTTGAGCCCAAATGATGAAGACATTCCACATGGTTTTATCTTCTCAACATTCATGTTGTCTTCAATGCTTGGAAGTTCCCTTGCATCTCGGTTGATGGCTCGCCAATCACCTAGAGTAGAGAGCTATATGCAGATTGTCTTTGCCATTTCAGCTACCTCTCTCCTACTTCCCATTGTGACCAGCTTCTTGGTAACACCTGCCGGCACAAAAGGAGGGAGCATCTCGTTTGCAGGCTGTATCCAGCTTCTTGGATTCTGTGTCTTTGAGGCTTGTGTTGGACTATTCTGGCCATCAATTATGAAGATGAGGTCCCAATACATACCTGAGGAGGCCAGGAGCACCATCATGAACTTCTTCCGTATTCCACTTAATATTTTTGTCTGCATTGTGCTGTACAATGTATGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

44.86

Weight (kDa)

6.88

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_5 PF05631 4 - 358 5.9e-182 Sugar-tranasporters, 12 TM
MFS_1 PF07690 44 - 393 8.2e-17 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1024
Acc36I ACCTGC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 53
AccI GTMKAC 2 cut(s) 180, 791
AccII CGCG 1 cut(s) 711
AciI CCGC 2 cut(s) 709, 711
AclWI GGATC 3 cut(s) 286, 668, 790
AcoI YGGCCR 2 cut(s) 36, 1106
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 2 cut(s) 33, 1214
AfiI CCNNNNNNNGG 1 cut(s) 397
AgsI TTSAA 5 cut(s) 106, 115, 476, 779, 882
AjnI CCWGG 1 cut(s) 1151
AluBI AGCT 7 cut(s) 61, 229, 345, 942, 971, 1002, 1063
AluI AGCT 7 cut(s) 61, 229, 345, 942, 971, 1002, 1063
Alw21I GWGCWC 2 cut(s) 63, 1160
Alw26I GTCTC 1 cut(s) 774
AlwI GGATC 3 cut(s) 286, 668, 790
AlwNI CAGNNNCTG 1 cut(s) 772
AoxI GGCC 6 cut(s) 6, 36, 388, 587, 1106, 1149
ApeKI GCWGC 3 cut(s) 345, 608, 716
ArsI GACNNNNNNTTYG 2 cut(s) 802, 834
Asp700I GAANNNNTTC 2 cut(s) 840, 1172
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 5 cut(s) 79, 170, 388, 587, 1128
AsuHPI GGTGA 3 cut(s) 343, 683, 918
AvaII GGWCC 3 cut(s) 79, 170, 1128
AxyI CCTNAGG 1 cut(s) 1143
BalI TGGCCA 1 cut(s) 1108
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 2 cut(s) 63, 827
BbsI GAAGAC 3 cut(s) 16, 843, 870
Bbv12I GWGCWC 2 cut(s) 63, 1160
BbvI GCAGC 3 cut(s) 332, 595, 703
BccI CCATC 4 cut(s) 142, 907, 1117, 1169
BceAI ACGGC 2 cut(s) 23, 375
BciT130I CCWGG 1 cut(s) 1153
BciVI GTATCC 1 cut(s) 1067
BcoDI GTCTC 1 cut(s) 774
BfaI CTAG 2 cut(s) 930, 1228
BfoI RGCGCY 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 1024
BfuI GTATCC 1 cut(s) 1067
BisI GCNGC 3 cut(s) 346, 609, 717
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 3 cut(s) 347, 610, 718
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 1153
Bme18I GGWCC 3 cut(s) 79, 170, 1128
BmgT120I GGNCC 5 cut(s) 79, 170, 388, 587, 1128
BmiI GGNNCC 4 cut(s) 55, 171, 250, 1130
BmrFI CCNGG 1 cut(s) 1153
BmrI ACTGGG 1 cut(s) 764
BmsI GCATC 5 cut(s) 324, 357, 595, 911, 1047
BmuI ACTGGG 1 cut(s) 764
BpiI GAAGAC 3 cut(s) 16, 843, 870
Bpu1102I GCTNAGC 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 39, 96, 709
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse118I RCCGGY 2 cut(s) 50, 1019
Bse1I ACTGG 3 cut(s) 39, 164, 759
Bse21I CCTNAGG 1 cut(s) 1143
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 1153
BseDI CCNNGG 3 cut(s) 39, 96, 709
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 4 cut(s) 76, 332, 651, 1134
BseNI ACTGG 3 cut(s) 39, 164, 759
BseRI GAGGAG 4 cut(s) 85, 241, 354, 1160
BseXI GCAGC 3 cut(s) 332, 595, 703
BseYI CCCAGC 2 cut(s) 152, 545
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 6 cut(s) 8, 38, 390, 589, 1108, 1151
BshNI GGYRCC 1 cut(s) 53
BsiHKAI GWGCWC 2 cut(s) 63, 1160
BsiSI CCGG 2 cut(s) 51, 1020
BslFI GGGAC 2 cut(s) 170, 1114
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 774
BsmFI GGGAC 2 cut(s) 170, 1114
BsnI GGCC 6 cut(s) 8, 38, 390, 589, 1108, 1151
Bsp1286I GDGCHC 3 cut(s) 63, 827, 1160
Bsp1407I TGTACA 1 cut(s) 1212
Bsp143I GATC 3 cut(s) 278, 673, 782
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 2 cut(s) 709, 711
BspANI GGCC 6 cut(s) 8, 38, 390, 589, 1108, 1151
BspCNI CTCAG 4 cut(s) 75, 333, 652, 1135
BspFNI CGCG 1 cut(s) 711
BspHI TCATGA 2 cut(s) 144, 1164
BspLI GGNNCC 4 cut(s) 55, 171, 250, 1130
BspMI ACCTGC 1 cut(s) 1024
BspPI GGATC 3 cut(s) 286, 668, 790
BspT107I GGYRCC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 2 cut(s) 50, 1019
BsrGI TGTACA 1 cut(s) 1212
BsrI ACTGG 3 cut(s) 39, 164, 759
BssAI RCCGGY 2 cut(s) 50, 1019
BssECI CCNNGG 3 cut(s) 39, 96, 709
BssMI GATC 3 cut(s) 278, 673, 782
BssNAI GTATAC 1 cut(s) 792
BssNI GRCGYC 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 1153
Bst4CI ACNGT 2 cut(s) 600, 768
BstACI GRCGYC 1 cut(s) 54
BstAUI TGTACA 1 cut(s) 1212
BstC8I GCNNGC 6 cut(s) 52, 241, 313, 919, 1021, 1051
BstDEI CTNAG 4 cut(s) 62, 341, 660, 1143
BstDSI CCRYGG 2 cut(s) 39, 709
BstFNI CGCG 1 cut(s) 711
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 3 cut(s) 281, 676, 785
BstMAI GTCTC 1 cut(s) 774
BstMBI GATC 3 cut(s) 278, 673, 782
BstMWI GCNNNNNNNGC 3 cut(s) 542, 722, 968
BstNI CCWGG 1 cut(s) 1153
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 1151
BstUI CGCG 1 cut(s) 711
BstV1I GCAGC 3 cut(s) 332, 595, 703
BstV2I GAAGAC 3 cut(s) 16, 843, 870
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 2 cut(s) 1006, 1067
BstYI RGATCY 1 cut(s) 278
BstZ17I GTATAC 1 cut(s) 792
Bsu36I CCTNAGG 1 cut(s) 1143
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 6 cut(s) 8, 38, 390, 589, 1108, 1151
BtgI CCRYGG 2 cut(s) 39, 709
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 6 cut(s) 52, 241, 313, 919, 1021, 1051
CaiI CAGNNNCTG 1 cut(s) 772
CciI TCATGA 2 cut(s) 144, 1164
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 2 cut(s) 50, 1019
Cfr13I GGNCC 5 cut(s) 79, 170, 388, 587, 1128
Cfr42I CCGCGG 1 cut(s) 712
Csp6I GTAC 2 cut(s) 32, 1213
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 8 cut(s) 145, 256, 312, 441, 654, 848, 871, 1165
CviQI GTAC 2 cut(s) 32, 1213
DdeI CTNAG 4 cut(s) 62, 341, 660, 1143
DinI GGCGCC 1 cut(s) 55
DpnI GATC 3 cut(s) 280, 675, 784
DpnII GATC 3 cut(s) 278, 673, 782
EaeI YGGCCR 2 cut(s) 36, 1106
Ecl136II GAGCTC 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 8
Eco24I GRGCYC 2 cut(s) 63, 827
Eco47I GGWCC 3 cut(s) 79, 170, 1128
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 1143
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 2 cut(s) 170, 1128
EcoRII CCWGG 1 cut(s) 1151
EcoT22I ATGCAT 1 cut(s) 317
EcoT38I GRGCYC 2 cut(s) 63, 827
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
FaeI CATG 8 cut(s) 148, 259, 315, 444, 657, 851, 874, 1168
FaqI GGGAC 2 cut(s) 170, 1114
FatI CATG 8 cut(s) 144, 255, 311, 440, 653, 847, 870, 1164
FauNDI CATATG 1 cut(s) 199
FblI GTMKAC 2 cut(s) 180, 791
Fnu4HI GCNGC 3 cut(s) 346, 609, 717
FriOI GRGCYC 2 cut(s) 63, 827
Fsp4HI GCNGC 3 cut(s) 346, 609, 717
FspBI CTAG 2 cut(s) 930, 1228
GlaI GCGC 1 cut(s) 55
GluI GCNGC 3 cut(s) 346, 609, 717
GsaI CCCAGC 2 cut(s) 156, 549
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 6 cut(s) 8, 38, 390, 589, 1108, 1151
HapII CCGG 2 cut(s) 51, 1020
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 8 cut(s) 148, 259, 315, 444, 657, 851, 874, 1168
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 4 cut(s) 84, 437, 811, 1071
HpaII CCGG 2 cut(s) 51, 1020
HphI GGTGA 3 cut(s) 343, 683, 918
Hpy166II GTNNAC 3 cut(s) 181, 699, 792
Hpy188I TCNGA 4 cut(s) 29, 661, 682, 736
Hpy188III TCNNGA 5 cut(s) 115, 145, 379, 808, 1165
Hpy8I GTNNAC 3 cut(s) 181, 699, 792
HpyAV CCTTC 4 cut(s) 19, 121, 687, 773
HpyCH4III ACNGT 2 cut(s) 600, 768
HpyCH4IV ACGT 1 cut(s) 794
HpyCH4V TGCA 8 cut(s) 166, 315, 348, 596, 902, 949, 1049, 1203
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 722, 968
HpyF3I CTNAG 4 cut(s) 62, 341, 660, 1143
HpySE526I ACGT 1 cut(s) 794
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 8 cut(s) 148, 259, 315, 444, 657, 851, 874, 1168
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
KroI GCCGGC 2 cut(s) 50, 1019
KroNI GCCGGC 2 cut(s) 52, 1021
KspI CCGCGG 1 cut(s) 712
Kzo9I GATC 3 cut(s) 278, 673, 782
LmnI GCTCC 3 cut(s) 254, 1035, 1155
Lsp1109I GCAGC 3 cut(s) 332, 595, 703
LweI GCATC 5 cut(s) 324, 357, 595, 911, 1047
MaeI CTAG 2 cut(s) 930, 1228
MaeII ACGT 1 cut(s) 794
MaeIII GTNAC 4 cut(s) 493, 750, 994, 1009
MalI GATC 3 cut(s) 280, 675, 784
MboI GATC 3 cut(s) 278, 673, 782
MboII GAAGA 6 cut(s) 16, 848, 850, 870, 1132, 1165
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 3 cut(s) 63, 827, 1160
MlsI TGGCCA 1 cut(s) 1108
MluCI AATT 7 cut(s) 106, 121, 627, 664, 704, 744, 1113
MluNI TGGCCA 1 cut(s) 1108
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 2 cut(s) 446, 805
MmeI TCCRAC 2 cut(s) 256, 1075
Mox20I TGGCCA 1 cut(s) 1108
Mph1103I ATGCAT 1 cut(s) 317
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 2 cut(s) 50, 1019
MroXI GAANNNNTTC 2 cut(s) 840, 1172
MscI TGGCCA 1 cut(s) 1108
MseI TTAA 1 cut(s) 1188
MslI CAYNNNNRTG 2 cut(s) 372, 1163
Msp20I TGGCCA 1 cut(s) 1108
MspA1I CMGCKG 1 cut(s) 711
MspI CCGG 2 cut(s) 51, 1020
MspR9I CCNGG 1 cut(s) 1153
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 1153
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 3 cut(s) 542, 722, 968
NaeI GCCGGC 2 cut(s) 52, 1021
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 1 cut(s) 199
NdeII GATC 3 cut(s) 278, 673, 782
NgoMIV GCCGGC 2 cut(s) 50, 1019
NlaIII CATG 8 cut(s) 148, 259, 315, 444, 657, 851, 874, 1168
NlaIV GGNNCC 4 cut(s) 55, 171, 250, 1130
NmeAIII GCCGAG 2 cut(s) 77, 82
NmuCI GTSAC 1 cut(s) 994
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 1 cut(s) 315
PaeI GCATGC 1 cut(s) 315
PagI TCATGA 2 cut(s) 144, 1164
PaqCI CACCTGC 1 cut(s) 1024
PceI AGGCCT 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdiI GCCGGC 2 cut(s) 52, 1021
PdmI GAANNNNTTC 2 cut(s) 840, 1172
PfeI GAWTC 2 cut(s) 84, 1071
PkrI GCNGC 3 cut(s) 347, 610, 718
PleI GAGTC 2 cut(s) 445, 805
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 2 cut(s) 445, 805
PpuMI RGGWCCY 2 cut(s) 170, 1128
Psp124BI GAGCTC 1 cut(s) 63
Psp5II RGGWCCY 2 cut(s) 170, 1128
Psp6I CCWGG 1 cut(s) 1151
PspFI CCCAGC 2 cut(s) 152, 545
PspGI CCWGG 1 cut(s) 1151
PspN4I GGNNCC 4 cut(s) 55, 171, 250, 1130
PspPI GGNCC 5 cut(s) 79, 170, 388, 587, 1128
PspPPI RGGWCCY 2 cut(s) 170, 1128
PstNI CAGNNNCTG 1 cut(s) 772
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 2 cut(s) 33, 1214
RsaNI GTAC 2 cut(s) 32, 1213
RseI CAYNNNNRTG 2 cut(s) 372, 1163
SacI GAGCTC 1 cut(s) 63
SacII CCGCGG 1 cut(s) 712
SaqAI TTAA 1 cut(s) 1188
SatI GCNGC 3 cut(s) 346, 609, 717
Sau3AI GATC 3 cut(s) 278, 673, 782
Sau96I GGNCC 5 cut(s) 79, 170, 388, 587, 1128
ScaI AGTACT 1 cut(s) 33
SchI GAGTC 2 cut(s) 446, 805
ScrFI CCNGG 1 cut(s) 1153
SduI GDGCHC 3 cut(s) 63, 827, 1160
SfaNI GCATC 5 cut(s) 324, 357, 595, 911, 1047
SfoI GGCGCC 1 cut(s) 55
Sfr303I CCGCGG 1 cut(s) 712
SgrAI CRCCGGYG 1 cut(s) 50
SgrBI CCGCGG 1 cut(s) 712
SinI GGWCC 3 cut(s) 79, 170, 1128
SmiMI CAYNNNNRTG 2 cut(s) 372, 1163
SphI GCATGC 1 cut(s) 315
Sse9I AATT 7 cut(s) 106, 121, 627, 664, 704, 744, 1113
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 2 cut(s) 709, 711
SspDI GGCGCC 1 cut(s) 53
SspI AATATT 2 cut(s) 513, 1192
SspMI CTAG 2 cut(s) 930, 1228
SstI GAGCTC 1 cut(s) 63
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 1151
TaaI ACNGT 2 cut(s) 600, 768
TaiI ACGT 1 cut(s) 797
TaqI TCGA 2 cut(s) 301, 603
TaqII GACCGA 1 cut(s) 96
TasI AATT 7 cut(s) 106, 121, 627, 664, 704, 744, 1113
TatI WGTACW 2 cut(s) 31, 1212
TfiI GAWTC 2 cut(s) 84, 1071
Tru1I TTAA 1 cut(s) 1188
Tru9I TTAA 1 cut(s) 1188
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 3 cut(s) 345, 608, 716
Tsp45I GTSAC 1 cut(s) 994
TspDTI ATGAA 6 cut(s) 223, 628, 849, 859, 1133, 1181
TspGWI ACGGA 1 cut(s) 1166
VpaK11BI GGWCC 3 cut(s) 79, 170, 1128
XceI RCATGY 1 cut(s) 315
XmiI GTMKAC 2 cut(s) 180, 791
XmnI GAANNNNTTC 2 cut(s) 840, 1172
XspI CTAG 2 cut(s) 930, 1228
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.