Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007070

Physical Location & Seq

Genomic Coordinates Reverse (-)

65306834 .. 65310684

Gene Structure 3851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG445200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGGCCTTCTACTACCTCGTCTTCGGAGTACTGGCGGTGGTGGTCGCCGGCGCCGAGCTCAGCAAAAGCAACAAGGACCGAATCAACACCTCCTCGGCTTTCAATTCCTTCAAGAACAATTACCTCGTCATTTACTCGCTCATGATGGCTGGAGACTGGTTGCAGGGTCCTTATGTCTACTACCTTTATACTACATATGGATTTGGAAAGGGCGAGATTGGACAGCTTTTCATTGCTGGCTTTGGCTCCTCCATGTTGTTTGGAACGATTGTTGGATCTCTGGCAGACAAACAGGGTCGAAAGAGGGCATGCATCACTTATTGTATTACTTACATACTGAGCTGCATCACCAAACATTCTCCTCACTATAATGTCTTGATGTTGGGCCGTATTTTGGGAGGTATCGCCACATCACTTCTCTTTTCAGCGTTTGAGTCATGGCTTGTTGCTGAACACAACAAGAGGGGTTTTGAACCACAATGGTTGTCAGTAACATTCTCAAAGGCAATATTTCTTGGTAATGGTGTTGTTGCTATCTTGGCTGGGTTGCTTGGAAATACACTTGTTGATACATTGGCTCTTGGGCCTGTTGCACCGTTCGATGCTGCTTCGTGCTTTCTTACAATTGGAATGTTCATCATTCTATTCACATGGTCCGAGAATTATGGAGATCCTTCAGAAAGCAAAGACTTGTTTACCCAATTCCGCGGTGCTGCTGTGGCTATTGCTTCTGATGAGAAAATTGCGTTACTGGGTGCGATACAGTCTCTGTTTGAAGGATCAATGTATACGTTTGTGTTCCTCTGGACTCCTGCTTTGAGCCCAAATGATGAAGACATTCCACATGGTTTTATCTTCTCAACATTCATGTTGTCTTCAATGCTTGGAAGTTCCCTTGCATCTCGGTTGATGGCTCGCCAATCACCTAGAGTAGAGAGCTATATGCAGATTGTCTTTGCCATTTCAGCTACCTCTCTCCTACTTCCCATTGTGACCAGCGTATGTCATGTTACACGGTTTCAGGGGATGTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

346

Amino Acids

37.87

Weight (kDa)

6.51

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_5	PF05631	4 - 335	1.1e-172	Sugar-tranasporters, 12 TM
MFS_1	PF07690	44 - 334	2.4e-14	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49310 AT4G27720
fragaria_vesca	FvH4_7g32400 FvH4_7g32400 FvH4_7g32400 FvH4_7g32400
malus_domestica	MD01G1225400.v1.1 MD07G1295900.v1.1
prunus_persica	Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1 Prupe.2G315500_v2.0.a1
pyrus_communis	pycom01g23380 pycom07g26870
rosa_chinensis	RchiOBHm_Chr1g0381971
rosa_laevigata	RLG00000026197
rosa_multiflora	Rmu_sc0010238.1_g000001 Rmu_sc0017430.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278300
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455800 Rh1BG412900 Rh1CG427800 Rh1DG445200
rosa_wichuraiana	Rw1G041340 Rw1G041510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccI	GTMKAC	2 cut(s)	180, 791
AccII	CGCG	1 cut(s)	711
AciI	CCGC	3 cut(s)	38, 709, 711
AclWI	GGATC	3 cut(s)	286, 668, 790
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	5 cut(s)	106, 115, 476, 779, 882
AluBI	AGCT	5 cut(s)	61, 229, 345, 942, 971
AluI	AGCT	5 cut(s)	61, 229, 345, 942, 971
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	150, 774
AlwI	GGATC	3 cut(s)	286, 668, 790
AlwNI	CAGNNNCTG	1 cut(s)	772
AoxI	GGCC	3 cut(s)	6, 388, 587
ApeKI	GCWGC	3 cut(s)	345, 608, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
Asp700I	GAANNNNTTC	1 cut(s)	840
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	5 cut(s)	79, 170, 388, 587, 657
AsuHPI	GGTGA	2 cut(s)	343, 918
AvaII	GGWCC	3 cut(s)	79, 170, 657
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	63, 827
BbsI	GAAGAC	3 cut(s)	16, 843, 870
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	332, 595, 703
BccI	CCATC	2 cut(s)	142, 907
BceAI	ACGGC	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	150, 774
BfaI	CTAG	1 cut(s)	930
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	3 cut(s)	346, 609, 717
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	3 cut(s)	347, 610, 718
BmcAI	AGTACT	1 cut(s)	33
Bme18I	GGWCC	3 cut(s)	79, 170, 657
BmgT120I	GGNCC	5 cut(s)	79, 170, 388, 587, 657
BmiI	GGNNCC	3 cut(s)	55, 171, 250
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	4 cut(s)	324, 357, 595, 911
BmuI	ACTGGG	1 cut(s)	764
BpiI	GAAGAC	3 cut(s)	16, 843, 870
BpmI	CTGGAG	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	96, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	3 cut(s)	39, 164, 759
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	96, 709
BseGI	GGATG	1 cut(s)	1035
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	76, 332
BseNI	ACTGG	3 cut(s)	39, 164, 759
BseRI	GAGGAG	3 cut(s)	85, 241, 354
BseXI	GCAGC	3 cut(s)	332, 595, 703
BseYI	CCCAGC	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	3 cut(s)	8, 390, 589
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	2 cut(s)	150, 774
BsnI	GGCC	3 cut(s)	8, 390, 589
Bsp1286I	GDGCHC	2 cut(s)	63, 827
Bsp143I	GATC	3 cut(s)	278, 673, 782
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	3 cut(s)	38, 709, 711
BspANI	GGCC	3 cut(s)	8, 390, 589
BspCNI	CTCAG	2 cut(s)	75, 333
BspFNI	CGCG	1 cut(s)	711
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	55, 171, 250
BspPI	GGATC	3 cut(s)	286, 668, 790
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	39, 164, 759
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	96, 709
BssMI	GATC	3 cut(s)	278, 673, 782
BssNAI	GTATAC	1 cut(s)	792
BssNI	GRCGYC	1 cut(s)	54
Bst1107I	GTATAC	1 cut(s)	792
Bst4CI	ACNGT	3 cut(s)	600, 768, 1020
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	4 cut(s)	52, 241, 313, 919
BstDEI	CTNAG	2 cut(s)	62, 341
BstDSI	CCRYGG	1 cut(s)	709
BstF5I	GGATG	1 cut(s)	1035
BstFNI	CGCG	1 cut(s)	711
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	281, 676, 785
BstMAI	GTCTC	2 cut(s)	150, 774
BstMBI	GATC	3 cut(s)	278, 673, 782
BstMWI	GCNNNNNNNGC	3 cut(s)	542, 722, 968
BstNSI	RCATGY	1 cut(s)	315
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	3 cut(s)	332, 595, 703
BstV2I	GAAGAC	3 cut(s)	16, 843, 870
BstX2I	RGATCY	2 cut(s)	278, 673
BstYI	RGATCY	2 cut(s)	278, 673
BstZ17I	GTATAC	1 cut(s)	792
BsuRI	GGCC	3 cut(s)	8, 390, 589
BtgI	CCRYGG	1 cut(s)	709
BtsCI	GGATG	1 cut(s)	1035
Cac8I	GCNNGC	4 cut(s)	52, 241, 313, 919
CaiI	CAGNNNCTG	1 cut(s)	772
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	5 cut(s)	79, 170, 388, 587, 657
Cfr42I	CCGCGG	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	32
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	8 cut(s)	145, 256, 312, 441, 654, 848, 871, 1010
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	62, 341
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	3 cut(s)	280, 675, 784
DpnII	GATC	3 cut(s)	278, 673, 782
Ecl136II	GAGCTC	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	63, 827
Eco47I	GGWCC	3 cut(s)	79, 170, 657
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	663
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	170
EcoT22I	ATGCAT	1 cut(s)	317
EcoT38I	GRGCYC	2 cut(s)	63, 827
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
FaeI	CATG	8 cut(s)	148, 259, 315, 444, 657, 851, 874, 1013
FatI	CATG	8 cut(s)	144, 255, 311, 440, 653, 847, 870, 1009
FauNDI	CATATG	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	180, 791
Fnu4HI	GCNGC	3 cut(s)	346, 609, 717
FriOI	GRGCYC	2 cut(s)	63, 827
Fsp4HI	GCNGC	3 cut(s)	346, 609, 717
FspBI	CTAG	1 cut(s)	930
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	346, 609, 717
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	8, 390, 589
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	8 cut(s)	148, 259, 315, 444, 657, 851, 874, 1013
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	84, 437, 811
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	343, 918
Hpy166II	GTNNAC	3 cut(s)	181, 699, 792
Hpy188I	TCNGA	4 cut(s)	29, 661, 682, 736
Hpy188III	TCNNGA	4 cut(s)	115, 145, 379, 808
Hpy8I	GTNNAC	3 cut(s)	181, 699, 792
HpyAV	CCTTC	4 cut(s)	19, 121, 687, 773
HpyCH4III	ACNGT	3 cut(s)	600, 768, 1020
HpyCH4IV	ACGT	1 cut(s)	794
HpyCH4V	TGCA	6 cut(s)	166, 315, 348, 596, 902, 949
HpyF10VI	GCNNNNNNNGC	3 cut(s)	542, 722, 968
HpyF3I	CTNAG	2 cut(s)	62, 341
HpySE526I	ACGT	1 cut(s)	794
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	8 cut(s)	148, 259, 315, 444, 657, 851, 874, 1013
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
KspI	CCGCGG	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	278, 673, 782
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	3 cut(s)	332, 595, 703
LweI	GCATC	4 cut(s)	324, 357, 595, 911
MaeI	CTAG	1 cut(s)	930
MaeII	ACGT	1 cut(s)	794
MaeIII	GTNAC	4 cut(s)	493, 750, 994, 1012
MalI	GATC	3 cut(s)	280, 675, 784
MboI	GATC	3 cut(s)	278, 673, 782
MboII	GAAGA	4 cut(s)	16, 848, 850, 870
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	2 cut(s)	278, 673
MhlI	GDGCHC	2 cut(s)	63, 827
MluCI	AATT	6 cut(s)	106, 121, 627, 664, 704, 744
Mly113I	GGCGCC	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	446, 805
MmeI	TCCRAC	1 cut(s)	256
Mph1103I	ATGCAT	1 cut(s)	317
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	840
MseI	TTAA	1 cut(s)	1039
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	711
MspI	CCGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	3 cut(s)	542, 722, 968
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	54
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	3 cut(s)	278, 673, 782
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	8 cut(s)	148, 259, 315, 444, 657, 851, 874, 1013
NlaIV	GGNNCC	3 cut(s)	55, 171, 250
NmeAIII	GCCGAG	2 cut(s)	77, 82
NmuCI	GTSAC	1 cut(s)	994
NsiI	ATGCAT	1 cut(s)	317
NspI	RCATGY	1 cut(s)	315
PaeI	GCATGC	1 cut(s)	315
PagI	TCATGA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	347, 610, 718
PleI	GAGTC	2 cut(s)	445, 805
PluTI	GGCGCC	1 cut(s)	57
PpsI	GAGTC	2 cut(s)	445, 805
PpuMI	RGGWCCY	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	3 cut(s)	55, 171, 250
PspPI	GGNCC	5 cut(s)	79, 170, 388, 587, 657
PspPPI	RGGWCCY	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	772
PsuI	RGATCY	2 cut(s)	278, 673
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	372
SacI	GAGCTC	1 cut(s)	63
SacII	CCGCGG	1 cut(s)	712
SaqAI	TTAA	1 cut(s)	1039
SatI	GCNGC	3 cut(s)	346, 609, 717
Sau3AI	GATC	3 cut(s)	278, 673, 782
Sau96I	GGNCC	5 cut(s)	79, 170, 388, 587, 657
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	2 cut(s)	446, 805
SduI	GDGCHC	2 cut(s)	63, 827
SfaNI	GCATC	4 cut(s)	324, 357, 595, 911
SfoI	GGCGCC	1 cut(s)	55
Sfr303I	CCGCGG	1 cut(s)	712
SgrAI	CRCCGGYG	1 cut(s)	50
SgrBI	CCGCGG	1 cut(s)	712
SinI	GGWCC	3 cut(s)	79, 170, 657
SmiMI	CAYNNNNRTG	1 cut(s)	372
SphI	GCATGC	1 cut(s)	315
Sse9I	AATT	6 cut(s)	106, 121, 627, 664, 704, 744
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	38, 709, 711
SspDI	GGCGCC	1 cut(s)	53
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	1 cut(s)	930
SstI	GAGCTC	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	8
TaaI	ACNGT	3 cut(s)	600, 768, 1020
TaiI	ACGT	1 cut(s)	797
TaqI	TCGA	2 cut(s)	301, 603
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	6 cut(s)	106, 121, 627, 664, 704, 744
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	1039
Tru9I	TTAA	1 cut(s)	1039
TseFI	GTSAC	1 cut(s)	994
TseI	GCWGC	3 cut(s)	345, 608, 716
Tsp45I	GTSAC	1 cut(s)	994
TspDTI	ATGAA	4 cut(s)	223, 628, 849, 859
VpaK11BI	GGWCC	3 cut(s)	79, 170, 657
XceI	RCATGY	1 cut(s)	315
XmiI	GTMKAC	2 cut(s)	180, 791
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	1 cut(s)	930
ZrmI	AGTACT	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.