AT3G50560

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014176
Physical Location & Seq
Reverse (-)
18761006 .. 18764056
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50560.1

Sequence Viewer

Length: 819 bp
ATGATGAGAAACGTAGGGAGTTCGAGCTCTGGCAGCAAAGGCATAGCGGCCGTAGTCGGCGTTGGTCCAAAGCTCGGTCGCTCCATCGCTCGGAAGTTTGCTCACGAAGGCTACACCGTCGCCATCCTCGCTCGTGATCTTGGTAGGTTATCTAGAGTAGCAGAAGAGATAGCAAGAGAAGAGAAAGCACAAGTGTTTGCTATAAGAATTGATTGTGCAGATCCAAGAAGTGTAAGAGAAGCCTTCGAAGGAGTATTGTCGTTAGGGTTCGTGGAGGTTTTAGTGTACAATGCTTATCATTCTTCTTACGCAAGTCACCATCCCACTTCTTTCACCCACATTCCTTTTCAATCTTTCCAAACATCTATCTCTGTCTCTGTCTTCGCTGCATTTCTTTGCGCTCAACAGGTTACTCCCGGGATGATGGAGAAAGGAAAAGGAACTATACTCTTCACCGGTTGCTCGGCGTCTTTGAATGGCATTGCTGGTTTCTCCGAACTATGCTGTGGGAAATTTGCGTTGAGGGCACTGTCTCAATGCTTAGCAAAAGAATATCAAGCTTTTGGAATACATGTGGCTCATGTTATCATCGACGGTGTGGTTGGACCTCCAAGAGAAACAAACATCCCTCCCCGAGGAATGGTCGCAGAGCAATCATTCAACGTAGGAGGCGAAGATGGAGAAGGAGAAGGAGAAAGCTCGGGAGTGATGGGAATGGATCCTGATGTATTGGCTCAAACTTATTGGTATCTCCATGTTCAAGACCGGAGAGCTTGGACACATGAACTCGATATCCGACCATCAAACCCAAATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

272

Amino Acids

29.35

Weight (kDa)

6.31

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 196 8.9e-31 short chain dehydrogenase
adh_short_C2 PF13561 25 - 201 4.6e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50560
fragaria_vesca FvH4_1g15680
malus_domestica MD02G1168700.v1.1
prunus_persica Prupe.7G136500_v2.0.a1 Prupe.7G136500_v2.0.a1
pyrus_communis pycom02g13560 pycom15g24410
rosa_chinensis RchiOBHm_Chr2g0104991
rosa_laevigata RLG00000017387
rosa_multiflora Rmu_sc0000641.1_g000031
rosa_roxburghii Rroxscaffold_2G00138600
rosa_rugosa Rorug02G0124800
rosa_samantha Rh2AG175200 Rh2BG183100 Rh2CG179800 Rh2DG181600
rosa_wichuraiana Rw2G013770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AclWI GGATC 3 cut(s) 215, 713, 726
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 2 cut(s) 512, 811
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 4 cut(s) 74, 90, 635, 640
AflIII ACRYGT 1 cut(s) 571
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 4 cut(s) 350, 475, 661, 761
AloI GAACNNNNNNTCC 2 cut(s) 777, 809
AluBI AGCT 5 cut(s) 27, 73, 560, 699, 773
AluI AGCT 5 cut(s) 27, 73, 560, 699, 773
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 379, 537
AlwI GGATC 3 cut(s) 215, 713, 726
Ama87I CYCGRG 3 cut(s) 416, 633, 700
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 33, 386
ApoI RAATTY 2 cut(s) 512, 811
AsiGI ACCGGT 1 cut(s) 455
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 2 cut(s) 65, 605
AsuC2I CCSGG 2 cut(s) 417, 418
AsuHPI GGTGA 3 cut(s) 308, 325, 445
AsuII TTCGAA 1 cut(s) 246
AvaI CYCGRG 3 cut(s) 416, 633, 700
AvaII GGWCC 2 cut(s) 65, 605
BaeGI GKGCMC 1 cut(s) 529
BamHI GGATCC 1 cut(s) 718
BanII GRGCYC 1 cut(s) 29
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 45, 373
BccI CCATC 7 cut(s) 92, 131, 327, 418, 671, 703, 808
BceAI ACGGC 1 cut(s) 35
BcnI CCSGG 2 cut(s) 417, 418
BcoDI GTCTC 2 cut(s) 379, 537
BfaI CTAG 2 cut(s) 153, 817
BisI GCNGC 3 cut(s) 34, 48, 387
BlpI GCTNAGC 1 cut(s) 541
BlsI GCNGC 3 cut(s) 35, 49, 388
Bme1390I CCNGG 2 cut(s) 417, 418
Bme18I GGWCC 2 cut(s) 65, 605
BmeT110I CYCGRG 3 cut(s) 416, 633, 700
BmgT120I GGNCC 2 cut(s) 65, 605
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 2 cut(s) 417, 418
BpiI GAAGAC 1 cut(s) 373
Bpu1102I GCTNAGC 1 cut(s) 541
Bpu14I TTCGAA 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 417, 418
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 416, 634
BsaWI WCCGGW 2 cut(s) 455, 765
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 90, 635, 640
Bse118I RCCGGY 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 416, 634
BseGI GGATG 4 cut(s) 123, 319, 426, 624
BseLI CCNNNNNNNGG 4 cut(s) 74, 90, 635, 640
BseMI GCAATG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 529
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 45, 373
BsgI GTGCAG 1 cut(s) 237
Bsh1285I CGRYCG 2 cut(s) 51, 79
BshFI GGCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 455
BsiEI CGRYCG 2 cut(s) 51, 79
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 3 cut(s) 416, 633, 700
BsiSI CCGG 3 cut(s) 417, 456, 766
BslI CCNNNNNNNGG 4 cut(s) 74, 90, 635, 640
BsmAI GTCTC 2 cut(s) 379, 537
BsnI GGCC 1 cut(s) 50
BsoBI CYCGRG 3 cut(s) 416, 633, 700
Bsp119I TTCGAA 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 29, 529
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 136, 220, 718
Bsp1720I GCTNAGC 1 cut(s) 541
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 720
BspPI GGATC 3 cut(s) 215, 713, 726
BspT104I TTCGAA 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 455
BsrGI TGTACA 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 2 cut(s) 416, 634
BssMI GATC 3 cut(s) 136, 220, 718
BssNI GRCGYC 1 cut(s) 467
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 118, 531, 596
Bst6I CTCTTC 3 cut(s) 159, 174, 455
BstACI GRCGYC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 541
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 4 cut(s) 123, 319, 426, 624
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 3 cut(s) 139, 223, 721
BstMAI GTCTC 2 cut(s) 379, 537
BstMBI GATC 3 cut(s) 136, 220, 718
BstMCI CGRYCG 2 cut(s) 51, 79
BstMWI GCNNNNNNNGC 4 cut(s) 33, 39, 128, 524
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 2 cut(s) 415, 416
BstSLI GKGCMC 1 cut(s) 529
BstV1I GCAGC 2 cut(s) 45, 373
BstV2I GAAGAC 1 cut(s) 373
BstX2I RGATCY 2 cut(s) 220, 718
BstYI RGATCY 2 cut(s) 220, 718
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 4 cut(s) 123, 319, 426, 624
BtsIMutI CAGTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 2 cut(s) 65, 605
Cfr9I CCCGGG 1 cut(s) 416
CseI GACGC 1 cut(s) 456
Csp6I GTAC 1 cut(s) 286
CspAI ACCGGT 1 cut(s) 455
CviAII CATG 4 cut(s) 572, 581, 755, 782
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 541
DpnI GATC 3 cut(s) 138, 222, 720
DpnII GATC 3 cut(s) 136, 220, 718
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 159, 174, 455
EarI CTCTTC 3 cut(s) 159, 174, 455
Ecl136II GAGCTC 1 cut(s) 27
EclXI CGGCCG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 65, 605
Eco52I CGGCCG 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 27
Eco88I CYCGRG 3 cut(s) 416, 633, 700
EcoICRI GAGCTC 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoRV GATATC 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 4 cut(s) 575, 584, 758, 785
FaiI YATR 8 cut(s) 44, 203, 446, 502, 573, 582, 756, 783
FatI CATG 4 cut(s) 571, 580, 754, 781
Fnu4HI GCNGC 3 cut(s) 34, 48, 387
FokI GGATG 4 cut(s) 110, 306, 433, 611
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 34, 48, 387
FspBI CTAG 2 cut(s) 153, 817
GlaI GCGC 1 cut(s) 400
GluI GCNGC 3 cut(s) 34, 48, 387
HaeIII GGCC 1 cut(s) 50
HapII CCGG 3 cut(s) 417, 456, 766
HgaI GACGC 1 cut(s) 456
HhaI GCGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 4 cut(s) 575, 584, 758, 785
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 558
HpaII CCGG 3 cut(s) 417, 456, 766
HphI GGTGA 3 cut(s) 308, 325, 445
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 93, 496, 797
Hpy188III TCNNGA 6 cut(s) 104, 134, 153, 702, 722, 761
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 122, 596
HpyAV CCTTC 5 cut(s) 101, 242, 253, 677, 683
HpyCH4III ACNGT 3 cut(s) 118, 531, 596
HpyCH4IV ACGT 2 cut(s) 12, 663
HpyCH4V TGCA 2 cut(s) 218, 389
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 39, 128, 524
HpyF3I CTNAG 1 cut(s) 541
HpySE526I ACGT 2 cut(s) 12, 663
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 4 cut(s) 575, 584, 758, 785
HspAI GCGC 1 cut(s) 399
Kzo9I GATC 3 cut(s) 136, 220, 718
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 7 cut(s) 15, 392, 430, 469, 471, 735, 779
Lsp1109I GCAGC 2 cut(s) 45, 373
MaeI CTAG 2 cut(s) 153, 817
MaeII ACGT 2 cut(s) 12, 663
MaeIII GTNAC 2 cut(s) 314, 409
MalI GATC 3 cut(s) 138, 222, 720
MboI GATC 3 cut(s) 136, 220, 718
MboII GAAGA 6 cut(s) 176, 191, 294, 373, 442, 686
MflI RGATCY 2 cut(s) 220, 718
MhlI GDGCHC 2 cut(s) 29, 529
MluCI AATT 3 cut(s) 207, 512, 811
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 7 cut(s) 137, 268, 516, 618, 629, 639, 662
MspI CCGG 3 cut(s) 417, 456, 766
MspR9I CCNGG 2 cut(s) 417, 418
MwoI GCNNNNNNNGC 4 cut(s) 33, 39, 128, 524
NciI CCSGG 2 cut(s) 417, 418
NdeII GATC 3 cut(s) 136, 220, 718
NlaIII CATG 4 cut(s) 575, 584, 758, 785
NlaIV GGNNCC 1 cut(s) 720
NmeAIII GCCGAG 1 cut(s) 443
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 575
NspV TTCGAA 1 cut(s) 246
PciI ACATGT 1 cut(s) 571
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PinAI ACCGGT 1 cut(s) 455
PkrI GCNGC 3 cut(s) 35, 49, 388
PscI ACATGT 1 cut(s) 571
Psp124BI GAGCTC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 720
PspPI GGNCC 2 cut(s) 65, 605
PsuI RGATCY 2 cut(s) 220, 718
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacI GAGCTC 1 cut(s) 29
SatI GCNGC 3 cut(s) 34, 48, 387
Sau3AI GATC 3 cut(s) 136, 220, 718
Sau96I GGNCC 2 cut(s) 65, 605
ScrFI CCNGG 2 cut(s) 417, 418
SduI GDGCHC 2 cut(s) 29, 529
SfuI TTCGAA 1 cut(s) 246
SinI GGWCC 2 cut(s) 65, 605
SmaI CCCGGG 1 cut(s) 418
Sse9I AATT 3 cut(s) 207, 512, 811
SsiI CCGC 1 cut(s) 47
SspMI CTAG 2 cut(s) 153, 817
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 415, 416
TaaI ACNGT 3 cut(s) 118, 531, 596
TaiI ACGT 2 cut(s) 15, 666
TaqI TCGA 4 cut(s) 23, 246, 591, 789
TaqII GACCGA 1 cut(s) 65
TasI AATT 3 cut(s) 207, 512, 811
TatI WGTACW 1 cut(s) 285
TauI GCSGC 1 cut(s) 50
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 33, 386
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 798
TspMI CCCGGG 1 cut(s) 416
TspRI CASTG 1 cut(s) 534
VpaK11BI GGWCC 2 cut(s) 65, 605
XagI CCTNNNNNAGG 1 cut(s) 633
XapI RAATTY 2 cut(s) 512, 811
XbaI TCTAGA 1 cut(s) 152
XceI RCATGY 1 cut(s) 575
XmaI CCCGGG 1 cut(s) 416
XspI CTAG 2 cut(s) 153, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.