FvH4_1g15680

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014176
Physical Location & Seq
Reverse (-)
8896807 .. 8898907
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15680.t1

Sequence Viewer

Length: 783 bp
ATGATACGCAACATGGCAAGCTCCGGTACCAGCAGCCGGGGCATCGCGGCCATTGTGGGCGTTGGACCAAATCTAGGTCGGTCAATCGCCCGCAAGTTCGCCCACGAAGGCTACACGGTGGCCATTCTTTCCCGTGATCTTGGCAGACTGTCGAAATTTGCTGACGAAATAGCGAGGGAGGAGAAATCTCAAGTGTTTGCCATAAGAATCGACTGCTCTGAGTCTCGCAGCGTGAGGGAGGCCTTTGAGGGTGTTCTTTCTCTTGGCTTTGTTGAGGTGCTGGTCTATAATGCTTACCAGCCGGTTTCTTGGAACCCCTCAAAGTTCTCCGACATTCGGATCGACTCCCTAGAGAAGTCCCTTGCCGTTTCTTCTGTCGGAGCCTTTCACTGCGCTCAACAGGTTCTTCCTGGTATGATTGAAAGGGGAAGGGGGACGATTTTGTTCACCGGATGTTCGGCTTCACTTAAAGGCATTGCTGGCTACTCTGAACTATGCTGTGGGAAATTTGCACTGAGAGCGCTATCACAATGTTTGTCCATGGAGTTCCAACCTTATGGTGTACACATTGCCCATGTTATTGTTGACGGTATCGTCGGACCGCCTAGGGGCGGCACATCATCAAATTCGAGTTCAAGAATTGCCGGAGTAGGAAGTGGCGGAGATGGGTCATTGGACCCGGACGCGGTGGCTCAAACCTACTGGCACTTGCACATTCAAGACCGGAGCGCTTGGACCCAAGAAATCGACCTCCGTCCTTCAATACCTCCCAGATATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

261

Amino Acids

27.91

Weight (kDa)

8.17

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 194 1.5e-29 short chain dehydrogenase
adh_short_C2 PF13561 24 - 193 1.3e-19 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50560
fragaria_vesca FvH4_1g15680
malus_domestica MD02G1168700.v1.1
prunus_persica Prupe.7G136500_v2.0.a1 Prupe.7G136500_v2.0.a1
pyrus_communis pycom02g13560 pycom15g24410
rosa_chinensis RchiOBHm_Chr2g0104991
rosa_laevigata RLG00000017387
rosa_multiflora Rmu_sc0000641.1_g000031
rosa_roxburghii Rroxscaffold_2G00138600
rosa_rugosa Rorug02G0124800
rosa_samantha Rh2AG175200 Rh2BG183100 Rh2CG179800 Rh2DG181600
rosa_wichuraiana Rw2G013770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccII CGCG 2 cut(s) 47, 686
AciI CCGC 6 cut(s) 47, 91, 602, 612, 660, 686
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 2 cut(s) 48, 120
AcsI RAATTY 3 cut(s) 155, 506, 625
AfaI GTAC 2 cut(s) 28, 564
AfeI AGCGCT 2 cut(s) 522, 730
AfiI CCNNNNNNNGG 6 cut(s) 36, 74, 336, 608, 611, 685
AgsI TTSAA 4 cut(s) 422, 636, 719, 762
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 347
Aor51HI AGCGCT 2 cut(s) 522, 730
AoxI GGCC 3 cut(s) 48, 120, 240
ApeKI GCWGC 2 cut(s) 33, 228
ApoI RAATTY 3 cut(s) 155, 506, 625
Asp718I GGTACC 1 cut(s) 26
AspA2I CCTAGG 1 cut(s) 605
AspLEI GCGC 3 cut(s) 395, 523, 731
AspS9I GGNCC 4 cut(s) 65, 599, 676, 735
AsuC2I CCSGG 2 cut(s) 38, 680
AsuHPI GGTGA 1 cut(s) 439
AvaII GGWCC 4 cut(s) 65, 599, 676, 735
AvrII CCTAGG 1 cut(s) 605
BalI TGGCCA 1 cut(s) 122
BanI GGYRCC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 45, 240
BccI CCATC 1 cut(s) 659
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 411
BcnI CCSGG 2 cut(s) 38, 680
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 4 cut(s) 74, 350, 606, 781
BfoI RGCGCY 2 cut(s) 524, 732
BisI GCNGC 4 cut(s) 34, 48, 229, 613
BlnI CCTAGG 1 cut(s) 605
BlsI GCNGC 4 cut(s) 35, 49, 230, 614
Bme1390I CCNGG 3 cut(s) 38, 411, 680
Bme18I GGWCC 4 cut(s) 65, 599, 676, 735
BmgT120I GGNCC 4 cut(s) 65, 599, 676, 735
BmiI GGNNCC 5 cut(s) 28, 314, 382, 678, 737
BmrFI CCNGG 3 cut(s) 38, 411, 680
BmsI GCATC 1 cut(s) 51
BoxI GACNNNNGTC 1 cut(s) 753
BpuEI CTTGAG 1 cut(s) 174
BpuMI CCSGG 2 cut(s) 38, 680
BsaJI CCNNGG 3 cut(s) 37, 540, 605
BsaWI WCCGGW 3 cut(s) 23, 449, 723
Bsc4I CCNNNNNNNGG 6 cut(s) 36, 74, 336, 608, 611, 685
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 707
Bse3DI GCAATG 2 cut(s) 474, 567
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 37, 540, 605
BseGI GGATG 1 cut(s) 458
BseLI CCNNNNNNNGG 6 cut(s) 36, 74, 336, 608, 611, 685
BseMI GCAATG 2 cut(s) 474, 567
BseMII CTCAG 2 cut(s) 210, 506
BseNI ACTGG 1 cut(s) 707
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 45, 240
Bsh1236I CGCG 2 cut(s) 47, 686
BshFI GGCC 3 cut(s) 50, 122, 242
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 7 cut(s) 24, 37, 302, 450, 645, 680, 724
BslFI GGGAC 2 cut(s) 343, 448
BslI CCNNNNNNNGG 6 cut(s) 36, 74, 336, 608, 611, 685
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 2 cut(s) 343, 448
BsnI GGCC 3 cut(s) 50, 122, 242
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 2 cut(s) 136, 339
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 6 cut(s) 47, 91, 602, 612, 660, 686
BspANI GGCC 3 cut(s) 50, 122, 242
BspCNI CTCAG 2 cut(s) 211, 507
BspFNI CGCG 2 cut(s) 47, 686
BspLI GGNNCC 5 cut(s) 28, 314, 382, 678, 737
BspPI GGATC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 474, 567
BsrFI RCCGGY 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 562
BsrI ACTGG 1 cut(s) 707
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 3 cut(s) 37, 540, 605
BssMI GATC 2 cut(s) 136, 339
BssT1I CCWWGG 2 cut(s) 540, 605
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 118, 150, 590
BstAUI TGTACA 1 cut(s) 562
BstC8I GCNNGC 3 cut(s) 19, 91, 481
BstDEI CTNAG 2 cut(s) 219, 515
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 458
BstFNI CGCG 2 cut(s) 47, 686
BstH2I RGCGCY 2 cut(s) 524, 732
BstHHI GCGC 3 cut(s) 395, 523, 731
BstKTI GATC 2 cut(s) 139, 342
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 136, 339
BstMWI GCNNNNNNNGC 3 cut(s) 39, 480, 518
BstNI CCWGG 1 cut(s) 411
BstPAI GACNNNNGTC 1 cut(s) 753
BstSCI CCNGG 3 cut(s) 36, 409, 678
BstUI CGCG 2 cut(s) 47, 686
BstV1I GCAGC 2 cut(s) 45, 240
BstXI CCANNNNNNTGG 1 cut(s) 557
BsuRI GGCC 3 cut(s) 50, 122, 242
BtgI CCRYGG 1 cut(s) 540
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 458
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 388, 512
Cac8I GCNNGC 3 cut(s) 19, 91, 481
CfoI GCGC 3 cut(s) 395, 523, 731
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 4 cut(s) 65, 599, 676, 735
CpoI CGGWCCG 1 cut(s) 599
CseI GACGC 1 cut(s) 692
Csp6I GTAC 2 cut(s) 27, 563
CspI CGGWCCG 1 cut(s) 599
CviAII CATG 3 cut(s) 13, 541, 575
CviQI GTAC 2 cut(s) 27, 563
DdeI CTNAG 2 cut(s) 219, 515
DpnI GATC 2 cut(s) 138, 341
DpnII GATC 2 cut(s) 136, 339
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 2 cut(s) 48, 120
EciI GGCGGA 1 cut(s) 675
Eco130I CCWWGG 2 cut(s) 540, 605
Eco147I AGGCCT 1 cut(s) 242
Eco47I GGWCC 4 cut(s) 65, 599, 676, 735
Eco47III AGCGCT 2 cut(s) 522, 730
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 540, 605
ErhI CCWWGG 2 cut(s) 540, 605
FaeI CATG 3 cut(s) 16, 544, 578
FaiI YATR 8 cut(s) 14, 203, 288, 416, 496, 542, 558, 576
FaqI GGGAC 2 cut(s) 343, 448
FatI CATG 3 cut(s) 12, 540, 574
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 4 cut(s) 34, 48, 229, 613
FokI GGATG 1 cut(s) 465
Fsp4HI GCNGC 4 cut(s) 34, 48, 229, 613
FspBI CTAG 4 cut(s) 74, 350, 606, 781
GlaI GCGC 3 cut(s) 394, 522, 730
GluI GCNGC 4 cut(s) 34, 48, 229, 613
HaeII RGCGCY 2 cut(s) 524, 732
HaeIII GGCC 3 cut(s) 50, 122, 242
HapII CCGG 7 cut(s) 24, 37, 302, 450, 645, 680, 724
HgaI GACGC 1 cut(s) 692
HhaI GCGC 3 cut(s) 395, 523, 731
Hin1II CATG 3 cut(s) 16, 544, 578
Hin6I GCGC 3 cut(s) 393, 521, 729
HinP1I GCGC 3 cut(s) 393, 521, 729
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 3 cut(s) 207, 221, 344
HpaII CCGG 7 cut(s) 24, 37, 302, 450, 645, 680, 724
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 4 cut(s) 447, 563, 565, 586
Hpy188I TCNGA 6 cut(s) 220, 331, 339, 380, 490, 599
Hpy188III TCNNGA 2 cut(s) 636, 719
Hpy8I GTNNAC 4 cut(s) 447, 563, 565, 586
Hpy99I CGWCG 1 cut(s) 599
HpyAV CCTTC 3 cut(s) 101, 423, 768
HpyCH4III ACNGT 3 cut(s) 118, 150, 590
HpyCH4V TGCA 2 cut(s) 512, 712
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 480, 518
HpyF3I CTNAG 2 cut(s) 219, 515
Hsp92II CATG 3 cut(s) 16, 544, 578
HspAI GCGC 3 cut(s) 393, 521, 729
KpnI GGTACC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 136, 339
LmnI GCTCC 3 cut(s) 26, 380, 726
Lsp1109I GCAGC 2 cut(s) 45, 240
LweI GCATC 1 cut(s) 51
MaeI CTAG 4 cut(s) 74, 350, 606, 781
MalI GATC 2 cut(s) 138, 341
MboI GATC 2 cut(s) 136, 339
MboII GAAGA 2 cut(s) 363, 398
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 4 cut(s) 155, 506, 625, 639
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 2 cut(s) 230, 338
MmeI TCCRAC 5 cut(s) 43, 354, 358, 574, 577
MnlI CCTC 9 cut(s) 168, 172, 228, 232, 241, 268, 328, 761, 777
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 1 cut(s) 468
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 7 cut(s) 24, 37, 302, 450, 645, 680, 724
MspR9I CCNGG 3 cut(s) 38, 411, 680
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 2 cut(s) 47, 686
MwoI GCNNNNNNNGC 3 cut(s) 39, 480, 518
NciI CCSGG 2 cut(s) 38, 680
NcoI CCATGG 1 cut(s) 540
NdeII GATC 2 cut(s) 136, 339
NlaIII CATG 3 cut(s) 16, 544, 578
NlaIV GGNNCC 5 cut(s) 28, 314, 382, 678, 737
PceI AGGCCT 1 cut(s) 242
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 4 cut(s) 35, 49, 230, 614
PleI GAGTC 2 cut(s) 229, 338
PpsI GAGTC 2 cut(s) 229, 338
PshAI GACNNNNGTC 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 5 cut(s) 28, 314, 382, 678, 737
PspPI GGNCC 4 cut(s) 65, 599, 676, 735
RsaI GTAC 2 cut(s) 28, 564
RsaNI GTAC 2 cut(s) 27, 563
Rsr2I CGGWCCG 1 cut(s) 599
RsrII CGGWCCG 1 cut(s) 599
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 4 cut(s) 34, 48, 229, 613
Sau3AI GATC 2 cut(s) 136, 339
Sau96I GGNCC 4 cut(s) 65, 599, 676, 735
SchI GAGTC 2 cut(s) 230, 338
ScrFI CCNGG 3 cut(s) 38, 411, 680
SetI ASST 8 cut(s) 23, 79, 279, 405, 556, 701, 753, 769
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 4 cut(s) 65, 599, 676, 735
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 4 cut(s) 155, 506, 625, 639
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 6 cut(s) 47, 91, 602, 612, 660, 686
SspMI CTAG 4 cut(s) 74, 350, 606, 781
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 36, 409, 678
StyI CCWWGG 2 cut(s) 540, 605
TaaI ACNGT 3 cut(s) 118, 150, 590
TaqI TCGA 5 cut(s) 152, 210, 342, 629, 747
TaqII GACCGA 1 cut(s) 69
TasI AATT 4 cut(s) 155, 506, 625, 639
TatI WGTACW 1 cut(s) 562
TauI GCSGC 2 cut(s) 50, 615
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 2 cut(s) 395, 519
TseI GCWGC 2 cut(s) 33, 228
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 2 cut(s) 395, 519
VpaK11BI GGWCC 4 cut(s) 65, 599, 676, 735
XapI RAATTY 3 cut(s) 155, 506, 625
XmaJI CCTAGG 1 cut(s) 605
XspI CTAG 4 cut(s) 74, 350, 606, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.