Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015117

Physical Location & Seq

Genomic Coordinates Reverse (-)

18834927 .. 18837395

Gene Structure 2469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGATGAGATTTGGGAAAGAGCTGTAGAAGCGGCTCTAGATGGTCAAACAGATAGGTTAGCTACACGAACGCTAACACTTGATGGTGCTGTGAAATGCGTTCAGGGACGTTTACCACCACCTAGTGTTCTCGAGAAGTTTCAGAATCTTCAGCATCTTTCTGTAGCTAACATCGGTGTTTCTTCTCTGGAACAGTTTCCTAGACTTGGTAATTTACAGAAGCTAATCTTATCTGATAATCGGATCACTGTTGGTTTAGAGTTTCTTGTTGAAGCTGGGCTTGATTCGTTCTGTGATTTGGATTTATCTAATAACCGGATCCAGTTTGTTGAGGATCTAGCTCCTTTGGCGGAGTTGAAGCTTGTGTCTCTTGATCTGTATGAGTGTCCTGTGACTAGGCTTAAGGATTATCGATCTAGGGTTTTTGGGTTGATTAAAACTTTGAAGTATTTAGATAAGACTGATGCTGAAGGGAATGAGAGGCCTGAGTCTGATGATGAAGATGATGAGGAAGATGAAGAGGATGAAGAAGAAGAAGAGGAAGGTGATGAGGAGGATCCTGGAAGTGGGGAGATTGATGGAGATGAAAGAGCAGAGGCTCCTCGGATGAGTAATGGCCATAGTGAAAGGGTAGATGGTGTTGTTGATGTTGATGAGGATGAAGAGAGTGATGCTGAGGATGATGAGTCAGAGCAGGCTACTGGAGTGAACGGGACGAGTTATCGGGCTAATGGATTCCGTCTTGAAGCTGTTAATGGGGAAGAAGTAAGGGAAGATGATGGGGATGATAGTGAGTCTGGTGAGGAGGAAGTAGGGGAAGATAATGATGTGGTTGAGGTTCATGAGATTGAAGATAGTGAGAATGAGGAAGATGGGGTTGATGATGAAGAAGATGATGAAGAGGATGAGGAGGAAGAGGAAGTTGATAATGCTGATCGTGGTCTTGGTGGGTCAGGGAGCACAAGCAGGTTGATGAACGCAGGAGAGATTGATGGGCATGAACAAGGAGATGACGATGAAGATGGTGATGGCGAGACTGGGGAAGATGACCAAGGGGTTGAGGATGATGGAGAGTTTGCGGATGAAGATGATGATGTTGAAGAGGAGGATGAAGAATCTGGTGAAGGGTACCTTGTTCAGCCAGTTTCTCAAGTGGAAGATCATGATGCTGTGGGTAATGACATCGAGCCGATCAATGAGGACAATGATCCAGATGAAGAAGAAGAAGTCGAAGATGACCTGCCAATTCCTGACCAGTCCTTGGCTTCATCATCTCGCCCAAAGAGAAAACGAGATGACGATGATGACGGTGAGGATGATGACGATGATGATGAGGAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006810 GO:0006913 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0034622 GO:0034728 GO:0042393 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046907 GO:0051169 GO:0051179 GO:0051234 GO:0051276 GO:0051641 GO:0051649 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_9

Protein Analysis

447

Amino Acids

49.56

Weight (kDa)

4.05

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	58 - 164	3.6e-10	Leucine-rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0015117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50690
fragaria_vesca	FvH4_1g13531
malus_domestica	MD02G1150500.v1.1 MD15G1265000.v1.1
prunus_persica	Prupe.7G152600_v2.0.a1
pyrus_communis	pycom02g11820 pycom15g23080
rosa_chinensis	RchiOBHm_Chr2g0101911
rosa_laevigata	RLG00000017115
rosa_multiflora	Rmu_sc0010781.1_g000002
rosa_rugosa	Rorug02G0103000
rosa_samantha	Rh2AG151000 Rh2BG156500 Rh2CG156300 Rh2DG156600
rosa_wichuraiana	Rw2G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	957, 1248
Acc65I	GGTACC	1 cut(s)	1128
AccB1I	GGYRCC	1 cut(s)	1128
AccB7I	CCANNNNNTGG	1 cut(s)	1261
AciI	CCGC	3 cut(s)	32, 350, 1079
AclI	AACGTT	1 cut(s)	1339
AclWI	GGATC	7 cut(s)	251, 313, 326, 342, 551, 564, 1202
AcoI	YGGCCR	1 cut(s)	616
AcuI	CTGAAG	2 cut(s)	134, 489
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	1130
AfiI	CCNNNNNNNGG	3 cut(s)	206, 566, 1261
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	6 cut(s)	272, 358, 445, 746, 851, 1100
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	8 cut(s)	23, 62, 167, 223, 275, 341, 361, 749
AluI	AGCT	8 cut(s)	23, 62, 167, 223, 275, 341, 361, 749
Alw21I	GWGCWC	1 cut(s)	962
Alw26I	GTCTC	2 cut(s)	372, 1028
AlwI	GGATC	7 cut(s)	251, 313, 326, 342, 551, 564, 1202
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	482, 616
Asp700I	GAANNNNTTC	1 cut(s)	195
Asp718I	GGTACC	1 cut(s)	1128
AsuHPI	GGTGA	5 cut(s)	557, 812, 1037, 1133, 1322
AvaI	CYCGRG	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	618
BamHI	GGATCC	2 cut(s)	318, 556
BanI	GGYRCC	1 cut(s)	1128
Bbv12I	GWGCWC	1 cut(s)	962
BbvCI	CCTCAGC	1 cut(s)	675
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	372, 1028
BfaI	CTAG	6 cut(s)	38, 123, 201, 338, 396, 417
BfmI	CTRYAG	2 cut(s)	24, 162
BfrI	CTTAAG	1 cut(s)	401
BfuAI	ACCTGC	2 cut(s)	957, 1248
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	561
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	4 cut(s)	320, 558, 600, 1130
BmrFI	CCNGG	1 cut(s)	561
BmrI	ACTGGG	1 cut(s)	1047
BmsI	GCATC	4 cut(s)	163, 454, 661, 1156
BmuI	ACTGGG	1 cut(s)	1047
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	1134
Bsa29I	ATCGAT	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	602, 1051, 1260
BsaWI	WCCGGW	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 566, 1261
Bse1I	ACTGG	5 cut(s)	322, 706, 1042, 1142, 1255
BseBI	CCWGG	1 cut(s)	561
BseCI	ATCGAT	1 cut(s)	412
BseDI	CCNNGG	3 cut(s)	602, 1051, 1260
BseLI	CCNNNNNNNGG	3 cut(s)	206, 566, 1261
BseMII	CTCAG	2 cut(s)	477, 666
BseNI	ACTGG	5 cut(s)	322, 706, 1042, 1142, 1255
BseRI	GAGGAG	5 cut(s)	566, 591, 818, 923, 1118
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	484, 618
BshNI	GGYRCC	1 cut(s)	1128
BshVI	ATCGAT	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	962
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	316
BslFI	GGGAC	2 cut(s)	120, 727
BslI	CCNNNNNNNGG	3 cut(s)	206, 566, 1261
BsmAI	GTCTC	2 cut(s)	372, 1028
BsmFI	GGGAC	2 cut(s)	120, 727
BsnI	GGCC	2 cut(s)	484, 618
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	962
BspACI	CCGC	3 cut(s)	32, 350, 1079
BspANI	GGCC	2 cut(s)	484, 618
BspCNI	CTCAG	2 cut(s)	478, 667
BspDI	ATCGAT	1 cut(s)	412
BspHI	TCATGA	2 cut(s)	841, 1162
BspLI	GGNNCC	4 cut(s)	320, 558, 600, 1130
BspMI	ACCTGC	2 cut(s)	957, 1248
BspPI	GGATC	7 cut(s)	251, 313, 326, 342, 551, 564, 1202
BspT107I	GGYRCC	1 cut(s)	1128
BspTI	CTTAAG	1 cut(s)	401
BsrI	ACTGG	5 cut(s)	322, 706, 1042, 1142, 1255
BssECI	CCNNGG	3 cut(s)	602, 1051, 1260
BssT1I	CCWWGG	2 cut(s)	1051, 1260
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	195, 250, 1310
Bst6I	CTCTTC	6 cut(s)	513, 531, 657, 894, 909, 1095
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	2 cut(s)	486, 675
BstMAI	GTCTC	2 cut(s)	372, 1028
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 347
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	2 cut(s)	24, 162
BstX2I	RGATCY	3 cut(s)	318, 334, 556
BstYI	RGATCY	3 cut(s)	318, 334, 556
Bsu15I	ATCGAT	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	484, 618
BsuTUI	ATCGAT	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	246
BveI	ACCTGC	2 cut(s)	957, 1248
Cac8I	GCNNGC	1 cut(s)	696
CciI	TCATGA	2 cut(s)	841, 1162
ClaI	ATCGAT	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	1129
CviAII	CATG	3 cut(s)	842, 998, 1163
CviQI	GTAC	1 cut(s)	1129
DdeI	CTNAG	2 cut(s)	486, 675
DraIII	CACNNNGTG	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	6 cut(s)	513, 531, 657, 894, 909, 1095
EarI	CTCTTC	6 cut(s)	513, 531, 657, 894, 909, 1095
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	1051, 1260
Eco147I	AGGCCT	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	134, 489
Eco88I	CYCGRG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	2 cut(s)	1051, 1260
ErhI	CCWWGG	2 cut(s)	1051, 1260
FaeI	CATG	3 cut(s)	845, 1001, 1166
FaiI	YATR	5 cut(s)	381, 621, 843, 999, 1164
FalI	AAGNNNNNCTT	6 cut(s)	212, 244, 264, 296, 1116, 1148
FaqI	GGGAC	2 cut(s)	120, 727
FatI	CATG	3 cut(s)	841, 997, 1162
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	6 cut(s)	38, 123, 201, 338, 396, 417
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	2 cut(s)	484, 618
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	3 cut(s)	845, 1001, 1166
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	7 cut(s)	145, 284, 488, 686, 735, 794, 1115
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	5 cut(s)	557, 812, 1037, 1133, 1322
Hpy166II	GTNNAC	2 cut(s)	113, 709
Hpy188I	TCNGA	6 cut(s)	144, 235, 243, 493, 606, 691
Hpy8I	GTNNAC	2 cut(s)	113, 709
HpyAV	CCTTC	3 cut(s)	464, 536, 1118
HpyCH4III	ACNGT	3 cut(s)	195, 250, 1310
HpyCH4IV	ACGT	2 cut(s)	109, 1339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 347
HpyF3I	CTNAG	2 cut(s)	486, 675
HpySE526I	ACGT	2 cut(s)	109, 1339
Hsp92II	CATG	3 cut(s)	845, 1001, 1166
KpnI	GGTACC	1 cut(s)	1132
LmnI	GCTCC	3 cut(s)	346, 604, 957
LweI	GCATC	4 cut(s)	163, 454, 661, 1156
MaeI	CTAG	6 cut(s)	38, 123, 201, 338, 396, 417
MaeII	ACGT	2 cut(s)	109, 1339
MaeIII	GTNAC	1 cut(s)	391
MflI	RGATCY	3 cut(s)	318, 334, 556
MhlI	GDGCHC	1 cut(s)	962
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	2 cut(s)	211, 1245
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	3 cut(s)	497, 695, 803
Mox20I	TGGCCA	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	3 cut(s)	402, 435, 753
Msp20I	TGGCCA	1 cut(s)	618
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	2 cut(s)	29, 347
NlaIII	CATG	3 cut(s)	845, 1001, 1166
NlaIV	GGNNCC	4 cut(s)	320, 558, 600, 1130
NmuCI	GTSAC	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	131
PagI	TCATGA	2 cut(s)	841, 1162
PceI	AGGCCT	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	4 cut(s)	145, 284, 735, 1115
PflMI	CCANNNNNTGG	1 cut(s)	1261
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	3 cut(s)	496, 694, 802
PpsI	GAGTC	3 cut(s)	496, 694, 802
Psp1406I	AACGTT	1 cut(s)	1339
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	4 cut(s)	320, 558, 600, 1130
PsuI	RGATCY	3 cut(s)	318, 334, 556
RsaI	GTAC	1 cut(s)	1130
RsaNI	GTAC	1 cut(s)	1129
SaqAI	TTAA	3 cut(s)	402, 435, 753
SatI	GCNGC	1 cut(s)	33
SchI	GAGTC	3 cut(s)	497, 695, 803
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	962
SfaNI	GCATC	4 cut(s)	163, 454, 661, 1156
SfcI	CTRYAG	2 cut(s)	24, 162
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	3 cut(s)	131, 401, 1149
SmoI	CTYRAG	3 cut(s)	131, 401, 1149
Sse9I	AATT	2 cut(s)	211, 1245
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	3 cut(s)	32, 350, 1079
SspMI	CTAG	6 cut(s)	38, 123, 201, 338, 396, 417
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	2 cut(s)	1051, 1260
TaaI	ACNGT	3 cut(s)	195, 250, 1310
TaiI	ACGT	2 cut(s)	112, 1342
TaqI	TCGA	4 cut(s)	132, 412, 1185, 1230
TasI	AATT	2 cut(s)	211, 1245
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	4 cut(s)	145, 284, 735, 1115
Tru1I	TTAA	3 cut(s)	402, 435, 753
Tru9I	TTAA	3 cut(s)	402, 435, 753
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	1261
Vha464I	CTTAAG	1 cut(s)	401
XbaI	TCTAGA	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	6 cut(s)	38, 123, 201, 338, 396, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.