Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015117

Physical Location & Seq

Genomic Coordinates Reverse (-)

8783960 .. 8784820

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0103000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGTTTAGTTATCGATACATTCTCGTCTTCGGACCTGTTAGTCAGCGACGTCCTCTACAAGGCGGCCTTCGTAATCGCGCTGCTCAGATGGGCCTTCTACTGGGCCCTGAGACTCCGCCGGAGAATCTTGTCCGACGAGGATTCCGATCTGTTAGATGCGGAGCTTGACTATGAAGTAGTACAGTCTTCTTCCTGTACGACGTCTTCTCCTTTGTCGTCGACCCAGTTGATCAGAGACAGTCTGATACGGACGACGTTTGAGGAGGTGACCAGACGACAGGGAAACAGCTGTCGTTGGGACACCTGCGCCGTCTGCCTGAGCCAGTTGGAGATGGGGGACGAGGTCCGGGAGCTGAGGAACTGCTGCCACGTCTTCCACACCGAGTGCATCGACAGGTGGCTGGACTACAACGGCCATGATCATCACGATCACGCCGCCCATGACGACAACCACAAGACGTGCCCGCTCTGCAGGACGCCGCTGCTGACGTCATCGCAGATCCACAGCCTGAGCTGGGAGCAGAGGTCTCAGCCGAGCTGGGCTGTGGAGAGACTGCTCTATCTTTTTGGGGAGGATCTGGTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006810 GO:0006913 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0034622 GO:0034728 GO:0042393 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046907 GO:0051169 GO:0051179 GO:0051234 GO:0051276 GO:0051641 GO:0051649 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_9

Protein Analysis

196

Amino Acids

22.65

Weight (kDa)

5.06

Isoelectric Point (pI)

67.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	101 - 159	1.1e-08	Ring finger domain
zf-RING_11	PF17123	103 - 131	7e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50690
fragaria_vesca	FvH4_1g13531
malus_domestica	MD02G1150500.v1.1 MD15G1265000.v1.1
prunus_persica	Prupe.7G152600_v2.0.a1
pyrus_communis	pycom02g11820 pycom15g23080
rosa_chinensis	RchiOBHm_Chr2g0101911
rosa_laevigata	RLG00000017115
rosa_multiflora	Rmu_sc0010781.1_g000002
rosa_rugosa	Rorug02G0103000
rosa_samantha	Rh2AG151000 Rh2BG156500 Rh2CG156300 Rh2DG156600
rosa_wichuraiana	Rw2G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	314
AasI	GACNNNNNNGTC	1 cut(s)	41
AatII	GACGTC	3 cut(s)	54, 206, 494
Acc36I	ACCTGC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	221
AccII	CGCG	1 cut(s)	80
AciI	CCGC	6 cut(s)	65, 118, 161, 438, 467, 482
AclWI	GGATC	2 cut(s)	496, 585
AcoI	YGGCCR	1 cut(s)	415
AcyI	GRCGYC	4 cut(s)	51, 203, 479, 491
AdeI	CACNNNGTG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	183, 199
AfiI	CCNNNNNNNGG	3 cut(s)	61, 102, 517
AjiI	CACGTC	2 cut(s)	373, 462
AluBI	AGCT	5 cut(s)	166, 291, 355, 516, 540
AluI	AGCT	5 cut(s)	166, 291, 355, 516, 540
Alw26I	GTCTC	4 cut(s)	106, 231, 534, 547
AlwI	GGATC	2 cut(s)	496, 585
AoxI	GGCC	4 cut(s)	66, 93, 105, 415
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	82, 366, 484
AspLEI	GCGC	2 cut(s)	82, 311
AspS9I	GGNCC	5 cut(s)	34, 93, 105, 106, 346
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	34, 346
BaeGI	GKGCMC	2 cut(s)	109, 467
BanII	GRGCYC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
BbsI	GAAGAC	4 cut(s)	21, 180, 198, 367
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	69, 353, 471
BccI	CCATC	2 cut(s)	84, 328
BceAI	ACGGC	2 cut(s)	296, 430
BclI	TGATCA	2 cut(s)	231, 421
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	4 cut(s)	106, 231, 534, 547
BfmI	CTRYAG	2 cut(s)	472, 587
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	6 cut(s)	66, 83, 367, 438, 482, 485
BlsI	GCNGC	6 cut(s)	67, 84, 368, 439, 483, 486
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	34, 346
BmgBI	CACGTC	2 cut(s)	373, 462
BmgT120I	GGNCC	5 cut(s)	34, 93, 105, 106, 346
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	2 cut(s)	112, 220
BmsI	GCATC	2 cut(s)	148, 399
BmuI	ACTGGG	2 cut(s)	112, 220
BpiI	GAAGAC	4 cut(s)	21, 180, 198, 367
Bpu10I	CCTNAGC	3 cut(s)	320, 356, 512
BpuMI	CCSGG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	147
BsaHI	GRCGYC	4 cut(s)	51, 203, 479, 491
BsaI	GGTCTC	1 cut(s)	534
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 512, 542
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 102, 517
Bse1I	ACTGG	3 cut(s)	107, 226, 325
Bse8I	GATNNNNATC	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	15
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	61, 102, 517
BseMII	CTCAG	6 cut(s)	100, 101, 311, 347, 503, 545
BseNI	ACTGG	3 cut(s)	107, 226, 325
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	109, 467
BseXI	GCAGC	3 cut(s)	69, 353, 471
BseYI	CCCAGC	2 cut(s)	516, 540
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	4 cut(s)	68, 95, 107, 417
BshVI	ATCGAT	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	121, 349
BslFI	GGGAC	2 cut(s)	314, 353
BslI	CCNNNNNNNGG	3 cut(s)	61, 102, 517
BsmAI	GTCTC	4 cut(s)	106, 231, 534, 547
BsmFI	GGGAC	2 cut(s)	314, 353
BsnI	GGCC	4 cut(s)	68, 95, 107, 417
Bso31I	GGTCTC	1 cut(s)	534
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	109, 467
Bsp143I	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
BspACI	CCGC	6 cut(s)	65, 118, 161, 438, 467, 482
BspANI	GGCC	4 cut(s)	68, 95, 107, 417
BspCNI	CTCAG	6 cut(s)	99, 102, 312, 348, 504, 544
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	496, 585
BspTNI	GGTCTC	1 cut(s)	534
BsrBI	CCGCTC	1 cut(s)	469
BsrI	ACTGG	3 cut(s)	107, 226, 325
BssMI	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
BssNI	GRCGYC	4 cut(s)	51, 203, 479, 491
Bst4CI	ACNGT	2 cut(s)	186, 242
BstACI	GRCGYC	4 cut(s)	51, 203, 479, 491
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	6 cut(s)	86, 110, 320, 356, 512, 531
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	82, 311
BstKTI	GATC	6 cut(s)	151, 234, 424, 433, 504, 580
BstMAI	GTCTC	4 cut(s)	106, 231, 534, 547
BstMBI	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 471
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	472, 587
BstSLI	GKGCMC	2 cut(s)	109, 467
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	69, 353, 471
BstV2I	GAAGAC	4 cut(s)	21, 180, 198, 367
BstX2I	RGATCY	2 cut(s)	501, 577
BstYI	RGATCY	2 cut(s)	501, 577
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	68, 95, 107, 417
BsuTUI	ATCGAT	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	480
BtrI	CACGTC	2 cut(s)	373, 462
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	467
CfoI	GCGC	2 cut(s)	82, 311
Cfr13I	GGNCC	5 cut(s)	34, 93, 105, 106, 346
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	182, 198
CviAII	CATG	2 cut(s)	419, 443
CviQI	GTAC	2 cut(s)	182, 198
DdeI	CTNAG	6 cut(s)	86, 110, 320, 356, 512, 531
DpnI	GATC	6 cut(s)	150, 233, 423, 432, 503, 579
DpnII	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
DraIII	CACNNNGTG	1 cut(s)	387
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	415
EciI	GGCGGA	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	34, 346
Eco91I	GGTNACC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	2 cut(s)	422, 446
FaiI	YATR	4 cut(s)	174, 420, 444, 589
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	2 cut(s)	314, 353
FatI	CATG	2 cut(s)	418, 442
FauI	CCCGC	1 cut(s)	474
FbaI	TGATCA	2 cut(s)	231, 421
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	6 cut(s)	66, 83, 367, 438, 482, 485
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	6 cut(s)	66, 83, 367, 438, 482, 485
GlaI	GCGC	2 cut(s)	81, 310
GluI	GCNGC	6 cut(s)	66, 83, 367, 438, 482, 485
GsaI	CCCAGC	2 cut(s)	520, 544
HaeIII	GGCC	4 cut(s)	68, 95, 107, 417
HapII	CCGG	2 cut(s)	121, 349
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	2 cut(s)	82, 311
Hin1I	GRCGYC	4 cut(s)	51, 203, 479, 491
Hin1II	CATG	2 cut(s)	422, 446
Hin6I	GCGC	2 cut(s)	80, 309
HinP1I	GCGC	2 cut(s)	80, 309
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	3 cut(s)	114, 126, 143
HpaII	CCGG	2 cut(s)	121, 349
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	6 cut(s)	34, 89, 136, 148, 236, 246
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	5 cut(s)	53, 140, 205, 223, 259
HpyAV	CCTTC	2 cut(s)	79, 106
HpyCH4III	ACNGT	2 cut(s)	186, 242
HpyCH4IV	ACGT	6 cut(s)	51, 203, 257, 372, 461, 491
HpyCH4V	TGCA	2 cut(s)	390, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 471
HpyF3I	CTNAG	6 cut(s)	86, 110, 320, 356, 512, 531
HpySE526I	ACGT	6 cut(s)	51, 203, 257, 372, 461, 491
Hsp92I	GRCGYC	4 cut(s)	51, 203, 479, 491
Hsp92II	CATG	2 cut(s)	422, 446
HspAI	GCGC	2 cut(s)	80, 309
Ksp22I	TGATCA	2 cut(s)	231, 421
Kzo9I	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
LmnI	GCTCC	3 cut(s)	163, 352, 520
Lsp1109I	GCAGC	3 cut(s)	69, 353, 471
LweI	GCATC	2 cut(s)	148, 399
MaeII	ACGT	6 cut(s)	51, 203, 257, 372, 461, 491
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	6 cut(s)	150, 233, 423, 432, 503, 579
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
MboII	GAAGA	5 cut(s)	21, 180, 183, 198, 367
MflI	RGATCY	2 cut(s)	501, 577
MhlI	GDGCHC	2 cut(s)	109, 467
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	159, 309
MnlI	CCTC	8 cut(s)	65, 133, 256, 259, 337, 351, 519, 568
MspA1I	CMGCKG	2 cut(s)	291, 484
MspI	CCGG	2 cut(s)	121, 349
MspR9I	CCNGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	315, 471
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
NlaIII	CATG	2 cut(s)	422, 446
NlaIV	GGNNCC	1 cut(s)	107
NmeAIII	GCCGAG	1 cut(s)	561
NmuCI	GTSAC	1 cut(s)	268
PaqCI	CACCTGC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	126, 143
PflFI	GACNNNGTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	6 cut(s)	67, 84, 368, 439, 483, 486
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	516, 540
PspN4I	GGNNCC	1 cut(s)	107
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	5 cut(s)	34, 93, 105, 106, 346
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	2 cut(s)	501, 577
PsyI	GACNNNGTC	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	183, 199
RsaNI	GTAC	2 cut(s)	182, 198
SalI	GTCGAC	1 cut(s)	220
SatI	GCNGC	6 cut(s)	66, 83, 367, 438, 482, 485
Sau3AI	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
Sau96I	GGNCC	5 cut(s)	34, 93, 105, 106, 346
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	109, 467
SfaNI	GCATC	2 cut(s)	148, 399
SfcI	CTRYAG	2 cut(s)	472, 587
SinI	GGWCC	2 cut(s)	34, 346
SsiI	CCGC	6 cut(s)	65, 118, 161, 438, 467, 482
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	186, 242
TaiI	ACGT	6 cut(s)	54, 206, 260, 375, 464, 494
TaqI	TCGA	3 cut(s)	15, 221, 393
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	3 cut(s)	68, 440, 484
TfiI	GAWTC	2 cut(s)	126, 143
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	82, 366, 484
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	34, 346
XagI	CCTNNNNNAGG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	221
ZraI	GACGTC	3 cut(s)	52, 204, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.