MD15G1265000.v1.1

Acidic leucine-rich nuclear phosphoprotein 32-related

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
22698114 .. 22701671
3558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1265000.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGACGAGATCTGGGAGCGAGCCGTTGAGACAGCGCTAGAGGGCCAGACTGACCACGCCGCGGCTCGAGCCCTAACCCTTGACGGCGCCGTTAAGTGTGTCCAGGGTCGCCTGCCCCCTCCGGGCCTTCTAGAGAAGTTCCAGAACCTTCAGCACCTCTCAATCGCAAACGTCGGCGTTTCGTCCCTGGAGCAGTTCCCGAGGCTCCGAAATCTCCAGAAGCTCATCCTTTCTGATAACAGAATCGCCGGCGGCCTCGAATTCCTCGTCGAAGCCGGACTCAACTCGCTGAGGGATCTCGACCTCTCAAACAATCGGATTCAGCAGGTCGAGGATCTCGCGCCGCTGGCGCAGCTGAGGCTCGTCTCGCTTGATCTGTATGAGTGTCCGGTCACGCACGTCAAGGATTATCGATCTAGGGTTTTTGGATTGATTAAATCGTTGAAGTATTTGGATAAGATGGACGCGGATGAGAACGAGAGGCCGGAATCTGACGATGAGGAGGAGGATGAAGAGGACGAGGAGGATGATCCTGGGAGTGGTGAAATTGACGGGGAGGAGCGGCCGTTTGAGATGACCAATGGGCACAGTGAGGCGGTTGAGGGAGTTGTGGATGTTGATGAGGATGAAGAGAGTGATGCGGATGAGGAGGAGACGGTGACTGCGGGCAGAGTGAACGGAGCGAATCACCCAGCTGAGAACGGGTTCCGGTTTGCTGCGGCTGGTGAAGATGGCGATGAGGATGAGGAGGAGCCCGATGAGGATGATGAGAATGATTCTGGTGAGGAAATCGATGAGGATGGCGAGGATGACGATGTGGTGGAAGTTCATGAGATTGAGGATAGTGATGATGAGGAAGATGGGGTTGAGTATGATGAGGATGATGATGATGACGACGACGATGAAGATGACGAGGAAGAGGAGGTTGACAATGATGAAGGGGATTTGGCAGAGCCGGAGAGTACAGGGCGGTTGACGAGCACGGAGGGAGAGATTGATGGGCATGAGCAAGGGGAGGATGATGATGCAGATGAAGATGATAATGGCGAGACGGGAGAGGAAGAGCAGTTAGTAGAGGAAGATGTAGAGTTTGAGGATGAGGATGGTGATGAAGAGGAGAGGAGAAACATGGCTGCTGTTCTAATTATGCCATAG

Protein Analysis

385

Amino Acids

42.78

Weight (kDa)

4.05

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_9 PF14580 56 - 165 2.3e-12 Leucine-rich repeat
LRR_8 PF13855 70 - 124 5.7e-06 Leucine rich repeat
LRR_4 PF12799 71 - 114 1.6e-08 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50690
fragaria_vesca FvH4_1g13531
malus_domestica MD02G1150500.v1.1 MD15G1265000.v1.1
prunus_persica Prupe.7G152600_v2.0.a1
pyrus_communis pycom02g11820 pycom15g23080
rosa_chinensis RchiOBHm_Chr2g0101911
rosa_laevigata RLG00000017115
rosa_multiflora Rmu_sc0010781.1_g000002
rosa_rugosa Rorug02G0103000
rosa_samantha Rh2AG151000 Rh2BG156500 Rh2CG156300 Rh2DG156600
rosa_wichuraiana Rw2G011780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 86
AccBSI CCGCTC 1 cut(s) 562
AccII CGCG 3 cut(s) 62, 341, 467
AclWI GGATC 3 cut(s) 303, 342, 524
AcoI YGGCCR 1 cut(s) 563
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 964
AfeI AGCGCT 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 61, 122, 539
AgsI TTSAA 1 cut(s) 445
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 3 cut(s) 102, 186, 532
AluBI AGCT 3 cut(s) 223, 355, 695
AluI AGCT 3 cut(s) 223, 355, 695
Alw21I GWGCWC 1 cut(s) 983
Alw26I GTCTC 4 cut(s) 23, 370, 647, 1043
AlwI GGATC 3 cut(s) 303, 342, 524
Ama87I CYCGRG 2 cut(s) 66, 199
Aor51HI AGCGCT 1 cut(s) 36
AoxI GGCC 5 cut(s) 43, 124, 253, 482, 563
ApeKI GCWGC 3 cut(s) 352, 716, 1133
ApoI RAATTY 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
Asp700I GAANNNNTTC 1 cut(s) 704
AspLEI GCGC 4 cut(s) 37, 89, 343, 352
AspS9I GGNCC 2 cut(s) 43, 124
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 6 cut(s) 554, 670, 680, 737, 794, 1118
AvaI CYCGRG 2 cut(s) 66, 199
BaeGI GKGCMC 1 cut(s) 588
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 2 cut(s) 73, 756
Bbv12I GWGCWC 1 cut(s) 983
BbvCI CCTCAGC 2 cut(s) 290, 356
BbvI GCAGC 3 cut(s) 364, 703, 1120
BccI CCATC 6 cut(s) 454, 725, 794, 854, 992, 1097
BceAI ACGGC 4 cut(s) 8, 74, 100, 550
BciT130I CCWGG 3 cut(s) 104, 188, 534
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 4 cut(s) 23, 370, 647, 1043
BfaI CTAG 3 cut(s) 38, 131, 417
BfoI RGCGCY 2 cut(s) 38, 90
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 9
BisI GCNGC 9 cut(s) 60, 63, 253, 344, 353, 563, 717, 720, 1134
BlsI GCNGC 9 cut(s) 61, 64, 254, 345, 354, 564, 718, 721, 1135
Bme1390I CCNGG 4 cut(s) 104, 123, 188, 534
BmeT110I CYCGRG 2 cut(s) 66, 199
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 43, 124
BmiI GGNNCC 4 cut(s) 88, 206, 707, 753
BmrFI CCNGG 4 cut(s) 104, 123, 188, 534
BmsI GCATC 2 cut(s) 628, 1015
BpmI CTGGAG 2 cut(s) 200, 209
Bpu10I CCTNAGC 2 cut(s) 290, 356
BpuMI CCSGG 1 cut(s) 123
Bsa29I ATCGAT 2 cut(s) 412, 792
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 5 cut(s) 60, 103, 186, 200, 533
BsaWI WCCGGW 2 cut(s) 388, 708
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 122, 539
Bse118I RCCGGY 1 cut(s) 248
BseBI CCWGG 3 cut(s) 104, 188, 534
BseCI ATCGAT 2 cut(s) 412, 792
BseDI CCNNGG 5 cut(s) 60, 103, 186, 200, 533
BseLI CCNNNNNNNGG 3 cut(s) 61, 122, 539
BseMII CTCAG 3 cut(s) 281, 347, 687
BseSI GKGCMC 1 cut(s) 588
BseX3I CGGCCG 1 cut(s) 563
BseXI GCAGC 3 cut(s) 364, 703, 1120
BseYI CCCAGC 1 cut(s) 691
Bsh1236I CGCG 3 cut(s) 62, 341, 467
Bsh1285I CGRYCG 1 cut(s) 566
BshFI GGCC 5 cut(s) 45, 126, 255, 484, 565
BshNI GGYRCC 1 cut(s) 86
BshVI ATCGAT 2 cut(s) 412, 792
BsiEI CGRYCG 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 983
BsiHKCI CYCGRG 2 cut(s) 66, 199
BsiSI CCGG 7 cut(s) 122, 249, 276, 389, 485, 709, 956
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 3 cut(s) 61, 122, 539
BsmAI GTCTC 4 cut(s) 23, 370, 647, 1043
BsmBI CGTCTC 3 cut(s) 370, 647, 1043
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 5 cut(s) 45, 126, 255, 484, 565
BsoBI CYCGRG 2 cut(s) 66, 199
Bsp1286I GDGCHC 4 cut(s) 73, 588, 756, 983
Bsp143I GATC 6 cut(s) 9, 295, 334, 373, 413, 529
BspANI GGCC 5 cut(s) 45, 126, 255, 484, 565
BspCNI CTCAG 3 cut(s) 282, 348, 688
BspDI ATCGAT 2 cut(s) 412, 792
BspFNI CGCG 3 cut(s) 62, 341, 467
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 4 cut(s) 88, 206, 707, 753
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 3 cut(s) 303, 342, 524
BspQI GCTCTTC 1 cut(s) 1056
BspT107I GGYRCC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 5 cut(s) 60, 103, 186, 200, 533
BssMI GATC 6 cut(s) 9, 295, 334, 373, 413, 529
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 3 cut(s) 104, 188, 534
Bst4CI ACNGT 2 cut(s) 590, 658
Bst6I CTCTTC 5 cut(s) 507, 624, 912, 1056, 1107
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 5 cut(s) 21, 113, 250, 348, 667
BstDEI CTNAG 3 cut(s) 290, 356, 696
BstDSI CCRYGG 1 cut(s) 60
BstFNI CGCG 3 cut(s) 62, 341, 467
BstH2I RGCGCY 2 cut(s) 38, 90
BstHHI GCGC 4 cut(s) 37, 89, 343, 352
BstKTI GATC 6 cut(s) 12, 298, 337, 376, 416, 532
BstMAI GTCTC 4 cut(s) 23, 370, 647, 1043
BstMBI GATC 6 cut(s) 9, 295, 334, 373, 413, 529
BstMCI CGRYCG 1 cut(s) 566
BstMWI GCNNNNNNNGC 6 cut(s) 68, 347, 349, 352, 358, 367
BstNI CCWGG 3 cut(s) 104, 188, 534
BstSCI CCNGG 4 cut(s) 102, 121, 186, 532
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 3 cut(s) 62, 341, 467
BstV1I GCAGC 3 cut(s) 364, 703, 1120
BstX2I RGATCY 3 cut(s) 9, 295, 334
BstYI RGATCY 3 cut(s) 9, 295, 334
BstZI CGGCCG 1 cut(s) 563
Bsu15I ATCGAT 2 cut(s) 412, 792
BsuRI GGCC 5 cut(s) 45, 126, 255, 484, 565
BsuTUI ATCGAT 2 cut(s) 412, 792
BtgI CCRYGG 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 750
BtrI CACGTC 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 595
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 5 cut(s) 21, 113, 250, 348, 667
CciI TCATGA 1 cut(s) 829
CfoI GCGC 4 cut(s) 37, 89, 343, 352
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 43, 124
Cfr42I CCGCGG 1 cut(s) 63
ClaI ATCGAT 2 cut(s) 412, 792
CseI GACGC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 963
CviAII CATG 3 cut(s) 830, 1004, 1129
CviQI GTAC 1 cut(s) 963
DdeI CTNAG 3 cut(s) 290, 356, 696
DinI GGCGCC 1 cut(s) 88
DpnI GATC 6 cut(s) 11, 297, 336, 375, 415, 531
DpnII GATC 6 cut(s) 9, 295, 334, 373, 413, 529
EaeI YGGCCR 1 cut(s) 563
EagI CGGCCG 1 cut(s) 563
Eam1104I CTCTTC 5 cut(s) 507, 624, 912, 1056, 1107
EarI CTCTTC 5 cut(s) 507, 624, 912, 1056, 1107
EclXI CGGCCG 1 cut(s) 563
Eco24I GRGCYC 2 cut(s) 73, 756
Eco47III AGCGCT 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 2 cut(s) 66, 199
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 102, 186, 532
EcoT38I GRGCYC 2 cut(s) 73, 756
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
Esp3I CGTCTC 3 cut(s) 370, 647, 1043
FaeI CATG 3 cut(s) 833, 1007, 1132
FaiI YATR 7 cut(s) 381, 831, 873, 1005, 1130, 1148, 1153
FaqI GGGAC 1 cut(s) 169
FatI CATG 3 cut(s) 829, 1003, 1128
FauI CCCGC 1 cut(s) 658
Fnu4HI GCNGC 9 cut(s) 60, 63, 253, 344, 353, 563, 717, 720, 1134
FriOI GRGCYC 2 cut(s) 73, 756
Fsp4HI GCNGC 9 cut(s) 60, 63, 253, 344, 353, 563, 717, 720, 1134
FspBI CTAG 3 cut(s) 38, 131, 417
GlaI GCGC 4 cut(s) 36, 88, 342, 351
GluI GCNGC 9 cut(s) 60, 63, 253, 344, 353, 563, 717, 720, 1134
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 2 cut(s) 200, 209
HaeII RGCGCY 2 cut(s) 38, 90
HaeIII GGCC 5 cut(s) 45, 126, 255, 484, 565
HapII CCGG 7 cut(s) 122, 249, 276, 389, 485, 709, 956
HgaI GACGC 1 cut(s) 473
HhaI GCGC 4 cut(s) 37, 89, 343, 352
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 3 cut(s) 833, 1007, 1132
Hin6I GCGC 4 cut(s) 35, 87, 341, 350
HinP1I GCGC 4 cut(s) 35, 87, 341, 350
HincII GTYRAC 2 cut(s) 928, 975
HindII GTYRAC 2 cut(s) 928, 975
HinfI GANTC 6 cut(s) 243, 279, 319, 488, 685, 776
HpaII CCGG 7 cut(s) 122, 249, 276, 389, 485, 709, 956
HphI GGTGA 6 cut(s) 554, 670, 680, 737, 794, 1118
Hpy166II GTNNAC 3 cut(s) 676, 928, 975
Hpy188I TCNGA 4 cut(s) 209, 235, 318, 493
Hpy188III TCNNGA 6 cut(s) 131, 142, 199, 217, 299, 830
Hpy8I GTNNAC 3 cut(s) 676, 928, 975
Hpy99I CGWCG 4 cut(s) 176, 272, 899, 902
HpyAV CCTTC 3 cut(s) 137, 158, 932
HpyCH4III ACNGT 2 cut(s) 590, 658
HpyCH4IV ACGT 2 cut(s) 171, 399
HpyCH4V TGCA 1 cut(s) 1028
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 347, 349, 352, 358, 367
HpyF3I CTNAG 3 cut(s) 290, 356, 696
HpySE526I ACGT 2 cut(s) 171, 399
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 3 cut(s) 833, 1007, 1132
HspAI GCGC 4 cut(s) 35, 87, 341, 350
KasI GGCGCC 1 cut(s) 86
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 6 cut(s) 9, 295, 334, 373, 413, 529
LguI GCTCTTC 1 cut(s) 1056
LmnI GCTCC 6 cut(s) 16, 190, 210, 559, 680, 751
Lsp1109I GCAGC 3 cut(s) 364, 703, 1120
LweI GCATC 2 cut(s) 628, 1015
MaeI CTAG 3 cut(s) 38, 131, 417
MaeII ACGT 2 cut(s) 171, 399
MaeIII GTNAC 2 cut(s) 391, 658
MalI GATC 6 cut(s) 11, 297, 336, 375, 415, 531
MbiI CCGCTC 1 cut(s) 562
MboI GATC 6 cut(s) 9, 295, 334, 373, 413, 529
MflI RGATCY 3 cut(s) 9, 295, 334
MhlI GDGCHC 4 cut(s) 73, 588, 756, 983
MluCI AATT 3 cut(s) 260, 546, 1143
Mly113I GGCGCC 1 cut(s) 87
MlyI GAGTC 1 cut(s) 273
MreI CGCCGGCG 1 cut(s) 248
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 2 cut(s) 93, 435
MspA1I CMGCKG 4 cut(s) 62, 346, 355, 695
MspI CCGG 7 cut(s) 122, 249, 276, 389, 485, 709, 956
MspR9I CCNGG 4 cut(s) 104, 123, 188, 534
MvaI CCWGG 3 cut(s) 104, 188, 534
MvnI CGCG 3 cut(s) 62, 341, 467
MwoI GCNNNNNNNGC 6 cut(s) 68, 347, 349, 352, 358, 367
NaeI GCCGGC 1 cut(s) 250
NarI GGCGCC 1 cut(s) 87
NciI CCSGG 1 cut(s) 123
NdeII GATC 6 cut(s) 9, 295, 334, 373, 413, 529
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 3 cut(s) 833, 1007, 1132
NlaIV GGNNCC 4 cut(s) 88, 206, 707, 753
NmuCI GTSAC 2 cut(s) 391, 658
PaeR7I CTCGAG 1 cut(s) 66
PagI TCATGA 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 1056
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 5 cut(s) 243, 319, 488, 685, 776
PkrI GCNGC 9 cut(s) 61, 64, 254, 345, 354, 564, 718, 721, 1135
PleI GAGTC 1 cut(s) 273
PluTI GGCGCC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 273
Psp6I CCWGG 3 cut(s) 102, 186, 532
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 3 cut(s) 102, 186, 532
PspN4I GGNNCC 4 cut(s) 88, 206, 707, 753
PspPI GGNCC 2 cut(s) 43, 124
PspXI VCTCGAGB 1 cut(s) 66
PsuI RGATCY 3 cut(s) 9, 295, 334
PvuII CAGCTG 2 cut(s) 355, 695
RsaI GTAC 1 cut(s) 964
RsaNI GTAC 1 cut(s) 963
SacII CCGCGG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 1056
SaqAI TTAA 2 cut(s) 93, 435
SatI GCNGC 9 cut(s) 60, 63, 253, 344, 353, 563, 717, 720, 1134
Sau3AI GATC 6 cut(s) 9, 295, 334, 373, 413, 529
Sau96I GGNCC 2 cut(s) 43, 124
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 4 cut(s) 104, 123, 188, 534
SduI GDGCHC 4 cut(s) 73, 588, 756, 983
SfaNI GCATC 2 cut(s) 628, 1015
SfoI GGCGCC 1 cut(s) 88
Sfr274I CTCGAG 1 cut(s) 66
Sfr303I CCGCGG 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 248
SgrBI CCGCGG 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 3 cut(s) 260, 546, 1143
SspDI GGCGCC 1 cut(s) 86
SspMI CTAG 3 cut(s) 38, 131, 417
StyD4I CCNGG 4 cut(s) 102, 121, 186, 532
TaaI ACNGT 2 cut(s) 590, 658
TaiI ACGT 2 cut(s) 174, 402
TaqI TCGA 7 cut(s) 67, 258, 270, 300, 330, 412, 792
TasI AATT 3 cut(s) 260, 546, 1143
TatI WGTACW 1 cut(s) 962
TauI GCSGC 6 cut(s) 62, 65, 255, 346, 565, 722
TfiI GAWTC 5 cut(s) 243, 319, 488, 685, 776
Tru1I TTAA 2 cut(s) 93, 435
Tru9I TTAA 2 cut(s) 93, 435
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 2 cut(s) 391, 658
TseI GCWGC 3 cut(s) 352, 716, 1133
Tsp45I GTSAC 2 cut(s) 391, 658
TspDTI ATGAA 7 cut(s) 525, 642, 818, 918, 951, 1047, 1125
TspGWI ACGGA 2 cut(s) 693, 998
TspRI CASTG 1 cut(s) 595
XapI RAATTY 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 704
XspI CTAG 3 cut(s) 38, 131, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.