Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015117

Physical Location & Seq

Genomic Coordinates Reverse (-)

17137617 .. 17139854

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGAACGAGAGGCCGGAATCTGATGATGAGGAGGAGGATGAAGAGGACGAGGAGGATCGATCCTGGGAGTGGTGAAATTGACGGGGAGGAGCGGCCGTTTGAGATGACCAATGGGCACAGTGAGGCGGTTGAGGGAGTTGTGGATGTTGATGAGGATGAAGAGAGTGATGCGGATGAGGAGGAGACGGTGACTGCGGGGAGAGTGAACGGAGTGAATCACCCTGCTGAGAACGGCTTCCGGTTTGCTGCGACTGGTGAAGATGGCGATGAGGATGAGGAGGAGCCCGACGAGGATGATGAGAATGATTCTGGTGAAGAAATCGATGAGGATGGCGAGGATGACGATGTGGTGGAAGTTCATGAGATTGAGGATAGTGATGATGAGGAAGATGGGGTTGAGTATGATGAGGATGATGATGACGACGATGATGATGAAGATGACGAGGAAGAGGAGGTGGACAATGATGAAGGGGATTTGGCAGAGCCGGAGAGTACAGGGCGGTTGACGAGCACGGAGGGAGAGATTGATGGGCATGAGCAAGGGGAGGATGATGATGCAGATGAAGATGATAATGGCGAGACCGGAGAGGAAGAGCAGTTAGTAGAGGAAGATGGAGAGTTTGAGGATGAGGATGGTGATGAAGAGGAAGAGGACTATGGAGCAGGTTACTTGGTTCAACCGGTAGCACAGGCGGAGGAAGAAGATGCTGGGGGCAGTGACATGGACCCTGGGAACGAAGAAGGAGATGGCGAAGAGGAAGAAGTGGAAGACGAAGAAGATGACGAAGTTGAGGTGCTACCCCCCTCGTCGTCATCGCAACTCAAGCGGAAGAGAGACGGAGATGCAGATTCAGACGACAATGGAGAGGACGACGAGGAAGATGATGACGTGGTTGAGTACAGCAAGTCTTCGAAGAAGCATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006810 GO:0006913 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0034622 GO:0034728 GO:0042393 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046907 GO:0051169 GO:0051179 GO:0051234 GO:0051276 GO:0051641 GO:0051649 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_9

Protein Analysis

310

Amino Acids

34.43

Weight (kDa)

4.05

Isoelectric Point (pI)

67.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50690
fragaria_vesca	FvH4_1g13531
malus_domestica	MD02G1150500.v1.1 MD15G1265000.v1.1
prunus_persica	Prupe.7G152600_v2.0.a1
pyrus_communis	pycom02g11820 pycom15g23080
rosa_chinensis	RchiOBHm_Chr2g0101911
rosa_laevigata	RLG00000017115
rosa_multiflora	Rmu_sc0010781.1_g000002
rosa_rugosa	Rorug02G0103000
rosa_samantha	Rh2AG151000 Rh2BG156500 Rh2CG156300 Rh2DG156600
rosa_wichuraiana	Rw2G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	656
AccBSI	CCGCTC	1 cut(s)	94
AciI	CCGC	7 cut(s)	94, 128, 173, 197, 502, 695, 829
AclWI	GGATC	2 cut(s)	56, 65
AcoI	YGGCCR	1 cut(s)	95
AfaI	GTAC	2 cut(s)	496, 902
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgeI	ACCGGT	1 cut(s)	682
AgsI	TTSAA	1 cut(s)	680
AjiI	CACGTC	1 cut(s)	892
AjnI	CCWGG	2 cut(s)	64, 730
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	3 cut(s)	179, 575, 831
AlwI	GGATC	2 cut(s)	56, 65
AoxI	GGCC	2 cut(s)	13, 95
ApeKI	GCWGC	1 cut(s)	248
AsiGI	ACCGGT	1 cut(s)	682
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	727
AsuHPI	GGTGA	6 cut(s)	86, 202, 212, 269, 326, 650
AsuII	TTCGAA	1 cut(s)	914
AvaII	GGWCC	1 cut(s)	727
BaeGI	GKGCMC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	777, 903
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	7 cut(s)	257, 326, 386, 524, 608, 629, 743
BceAI	ACGGC	2 cut(s)	82, 250
BciT130I	CCWGG	2 cut(s)	66, 732
BcoDI	GTCTC	3 cut(s)	179, 575, 831
BfuAI	ACCTGC	1 cut(s)	656
BisI	GCNGC	2 cut(s)	95, 249
BlsI	GCNGC	2 cut(s)	96, 250
Bme1390I	CCNGG	2 cut(s)	66, 732
Bme18I	GGWCC	1 cut(s)	727
BmgBI	CACGTC	1 cut(s)	892
BmgT120I	GGNCC	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	285, 729
BmrFI	CCNGG	2 cut(s)	66, 732
BmsI	GCATC	4 cut(s)	160, 547, 697, 835
BpiI	GAAGAC	2 cut(s)	777, 903
Bpu14I	TTCGAA	1 cut(s)	914
BpuEI	CTTGAG	1 cut(s)	809
Bsa29I	ATCGAT	2 cut(s)	60, 324
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	65, 730, 731
BsaWI	WCCGGW	3 cut(s)	240, 584, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	66, 732
BseCI	ATCGAT	2 cut(s)	60, 324
BseDI	CCNNGG	3 cut(s)	65, 730, 731
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	9 cut(s)	46, 49, 67, 104, 194, 197, 293, 296, 467
BseSI	GKGCMC	1 cut(s)	120
BseX3I	CGGCCG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	710
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	15, 97
BshTI	ACCGGT	1 cut(s)	682
BshVI	ATCGAT	2 cut(s)	60, 324
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	5 cut(s)	16, 241, 488, 585, 683
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	3 cut(s)	179, 575, 831
BsmBI	CGTCTC	2 cut(s)	179, 831
BsnI	GGCC	2 cut(s)	15, 97
Bso31I	GGTCTC	1 cut(s)	575
Bsp119I	TTCGAA	1 cut(s)	914
Bsp1286I	GDGCHC	3 cut(s)	120, 288, 515
Bsp143I	GATC	2 cut(s)	57, 61
BspACI	CCGC	7 cut(s)	94, 128, 173, 197, 502, 695, 829
BspANI	GGCC	2 cut(s)	15, 97
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	2 cut(s)	60, 324
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	285, 729
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	2 cut(s)	56, 65
BspQI	GCTCTTC	1 cut(s)	588
BspT104I	TTCGAA	1 cut(s)	914
BspTNI	GGTCTC	1 cut(s)	575
BsrBI	CCGCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	682
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	3 cut(s)	65, 730, 731
BssMI	GATC	2 cut(s)	57, 61
Bst2UI	CCWGG	2 cut(s)	66, 732
Bst4CI	ACNGT	2 cut(s)	122, 190
Bst6I	CTCTTC	8 cut(s)	38, 156, 444, 588, 639, 645, 750, 827
BstBI	TTCGAA	1 cut(s)	914
BstDEI	CTNAG	1 cut(s)	228
BstKTI	GATC	2 cut(s)	60, 64
BstMAI	GTCTC	3 cut(s)	179, 575, 831
BstMBI	GATC	2 cut(s)	57, 61
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	826
BstNI	CCWGG	2 cut(s)	66, 732
BstSCI	CCNGG	2 cut(s)	64, 730
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	2 cut(s)	777, 903
BstZI	CGGCCG	1 cut(s)	95
Bsu15I	ATCGAT	2 cut(s)	60, 324
BsuRI	GGCC	2 cut(s)	15, 97
BsuTUI	ATCGAT	2 cut(s)	60, 324
BtgZI	GCGATG	2 cut(s)	282, 801
BtrI	CACGTC	1 cut(s)	892
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	2 cut(s)	127, 724
BveI	ACCTGC	1 cut(s)	656
CciI	TCATGA	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	1 cut(s)	727
ClaI	ATCGAT	2 cut(s)	60, 324
Csp6I	GTAC	2 cut(s)	495, 901
CspAI	ACCGGT	1 cut(s)	682
CviAII	CATG	3 cut(s)	362, 536, 724
CviJI	RGCY	5 cut(s)	15, 97, 237, 286, 487
CviKI_1	RGCY	5 cut(s)	15, 97, 237, 286, 487
CviQI	GTAC	2 cut(s)	495, 901
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	2 cut(s)	59, 63
DpnII	GATC	2 cut(s)	57, 61
EaeI	YGGCCR	1 cut(s)	95
EagI	CGGCCG	1 cut(s)	95
Eam1104I	CTCTTC	8 cut(s)	38, 156, 444, 588, 639, 645, 750, 827
EarI	CTCTTC	8 cut(s)	38, 156, 444, 588, 639, 645, 750, 827
EciI	GGCGGA	1 cut(s)	710
EclXI	CGGCCG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	727
Eco52I	CGGCCG	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	64, 730
EcoT38I	GRGCYC	1 cut(s)	288
Esp3I	CGTCTC	2 cut(s)	179, 831
FaeI	CATG	3 cut(s)	365, 539, 727
FaiI	YATR	5 cut(s)	363, 405, 537, 660, 725
FatI	CATG	3 cut(s)	361, 535, 723
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	95, 249
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	95, 249
GluI	GCNGC	2 cut(s)	95, 249
GsaI	CCCAGC	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	15, 97
HapII	CCGG	5 cut(s)	16, 241, 488, 585, 683
Hin1II	CATG	3 cut(s)	365, 539, 727
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	4 cut(s)	19, 217, 308, 851
HpaII	CCGG	5 cut(s)	16, 241, 488, 585, 683
HphI	GGTGA	6 cut(s)	86, 202, 212, 269, 326, 650
Hpy166II	GTNNAC	3 cut(s)	208, 460, 507
Hpy188I	TCNGA	2 cut(s)	24, 856
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	3 cut(s)	208, 460, 507
Hpy99I	CGWCG	4 cut(s)	293, 428, 814, 878
HpyAV	CCTTC	2 cut(s)	464, 737
HpyCH4III	ACNGT	2 cut(s)	122, 190
HpyCH4IV	ACGT	1 cut(s)	891
HpyCH4V	TGCA	2 cut(s)	560, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	826
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	891
Hsp92II	CATG	3 cut(s)	365, 539, 727
Kzo9I	GATC	2 cut(s)	57, 61
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	3 cut(s)	91, 283, 662
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	4 cut(s)	160, 547, 697, 835
MaeII	ACGT	1 cut(s)	891
MaeIII	GTNAC	3 cut(s)	190, 668, 719
MalI	GATC	2 cut(s)	59, 63
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	2 cut(s)	57, 61
MhlI	GDGCHC	3 cut(s)	120, 288, 515
MluCI	AATT	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	236
MspI	CCGG	5 cut(s)	16, 241, 488, 585, 683
MspR9I	CCNGG	2 cut(s)	66, 732
MvaI	CCWGG	2 cut(s)	66, 732
MwoI	GCNNNNNNNGC	1 cut(s)	826
NdeII	GATC	2 cut(s)	57, 61
NlaIII	CATG	3 cut(s)	365, 539, 727
NlaIV	GGNNCC	2 cut(s)	285, 729
NmuCI	GTSAC	2 cut(s)	190, 719
NspV	TTCGAA	1 cut(s)	914
PagI	TCATGA	1 cut(s)	361
PasI	CCCWGGG	1 cut(s)	731
PciSI	GCTCTTC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	4 cut(s)	19, 217, 308, 851
PinAI	ACCGGT	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	96, 250
Psp6I	CCWGG	2 cut(s)	64, 730
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	2 cut(s)	64, 730
PspN4I	GGNNCC	2 cut(s)	285, 729
PspPI	GGNCC	1 cut(s)	727
RsaI	GTAC	2 cut(s)	496, 902
RsaNI	GTAC	2 cut(s)	495, 901
SapI	GCTCTTC	1 cut(s)	588
SatI	GCNGC	2 cut(s)	95, 249
Sau3AI	GATC	2 cut(s)	57, 61
Sau96I	GGNCC	1 cut(s)	727
ScrFI	CCNGG	2 cut(s)	66, 732
SduI	GDGCHC	3 cut(s)	120, 288, 515
SetI	ASST	4 cut(s)	459, 670, 798, 894
SfaNI	GCATC	4 cut(s)	160, 547, 697, 835
SfuI	TTCGAA	1 cut(s)	914
SinI	GGWCC	1 cut(s)	727
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	7 cut(s)	94, 128, 173, 197, 502, 695, 829
StyD4I	CCNGG	2 cut(s)	64, 730
TaaI	ACNGT	2 cut(s)	122, 190
TaiI	ACGT	1 cut(s)	894
TaqI	TCGA	3 cut(s)	60, 324, 914
TasI	AATT	1 cut(s)	78
TatI	WGTACW	2 cut(s)	494, 900
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	4 cut(s)	19, 217, 308, 851
TscAI	CASTG	2 cut(s)	127, 724
TseFI	GTSAC	2 cut(s)	190, 719
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	190, 719
TspDTI	ATGAA	7 cut(s)	56, 174, 350, 450, 483, 579, 657
TspGWI	ACGGA	3 cut(s)	225, 530, 855
TspRI	CASTG	2 cut(s)	127, 724
VpaK11BI	GGWCC	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.