Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015117

Physical Location & Seq

Genomic Coordinates Reverse (-)

13567757 .. 13570930

Gene Structure 3174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG156300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGATGAGATCTGGGAGCGAGCCATTGAGACAGCGCTGGACGGCGAGACAGACCACGCGTCGGCTCGAACCCTGACTCTAGATGGTGCGGTGAAGTGTGTCCAGGGCCGGCTACCCCCTCCGGGTCTTCTAGAGAAGTTCCAGAACCTTCAGCATCTCTCGATTGCAAACGTCGGCGTTTCGTCCCTGGAGCAGTTCCCGAGGCTCCGAAGCCTCCACTCCCTGATTCTCTCCGACAATCGAATCGCAGGAGGGCTTGAATTTCTGGTAGAGGCCGGGCTGGACTCGCTGAGAGACCTGGACCTGTCCAACAACCGGATTCAGTATATTGAAGATCTTGCCCCGCTGGCGCAGCTGAAGCTGACCTCGCTTGATCTGTATGAGTGTCCGGTGACGCGTGTCAAGGATTACCGATCTAGGGTTTTCGGGTTGATTAGGTCGTTGAAGTATTTGGATAAGATGGATGCGGAGGAGAACGAACCGCCGGAGAGCGAGGATGAGGAGGAGGAGGATGAGGAGGATGAGGATGACCCTGGGAGCGGGGAAATCGATGGTGAGGATCGGCCTTCTAGGATGAGTAATGGGCACACTGAGGCGGCTGAAGGGGTTGTGGATGTTGATGAGGATGATGAGAGTGACGCCGATGAGGAGGAGACTTTGACTGCCACTAGGGTGAATGGACAGAATCACCCGACAGACAACGGGTTCCGGGTTGCTCCCGTGGCCGGAGAGAATGGAGGAGAGGATGAGGAGGATGATGATGATGAGAACTACTCTGCGGAGGAGATAGACGAGGAGGATAGTGAGGATGATGAGGTGGTGGAGGTGCATGAGATTGAGGATAGTGATGATGAGGAAGATGGGGTTGAGTATGATGAGGAGGATGATGACGATGACGACGACGATGAAGAAGATGAGGAGGAGGAAGTGGACAATGATGAGGGGGATTTGGCAGAGCCAGAGAGTACAGGAAGGTTAACAAGCACAGAGGGAGAGATTGATGGCCATGAGCAAGGAGAGGATGATGGAGATGAAGATGATAATGGAGAGACCGGGGAGGAGGAGCTGGGTGTTGAAGAAGAGGGACCGCTTGAAGTTGAAGTTGAAGATGAAGATGGCGAGGAAGAGGTGGCAAGTGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006810 GO:0006913 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0034622 GO:0034728 GO:0042393 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046907 GO:0051169 GO:0051179 GO:0051234 GO:0051276 GO:0051641 GO:0051649 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_9

Protein Analysis

381

Amino Acids

42.29

Weight (kDa)

4.05

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	56 - 154	1.8e-12	Leucine-rich repeat
LRR_4	PF12799	71 - 114	7.7e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50690
fragaria_vesca	FvH4_1g13531
malus_domestica	MD02G1150500.v1.1 MD15G1265000.v1.1
prunus_persica	Prupe.7G152600_v2.0.a1
pyrus_communis	pycom02g11820 pycom15g23080
rosa_chinensis	RchiOBHm_Chr2g0101911
rosa_laevigata	RLG00000017115
rosa_multiflora	Rmu_sc0010781.1_g000002
rosa_rugosa	Rorug02G0103000
rosa_samantha	Rh2AG151000 Rh2BG156500 Rh2CG156300 Rh2DG156600
rosa_wichuraiana	Rw2G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	540
AccII	CGCG	2 cut(s)	59, 397
AciI	CCGC	8 cut(s)	89, 344, 467, 482, 540, 596, 779, 1088
AclWI	GGATC	1 cut(s)	567
AcoI	YGGCCR	2 cut(s)	723, 1003
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	3 cut(s)	134, 377, 621
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	1 cut(s)	967
AfeI	AGCGCT	1 cut(s)	36
AfiI	CCNNNNNNNGG	6 cut(s)	61, 122, 315, 418, 539, 725
AflIII	ACRYGT	2 cut(s)	57, 395
AgsI	TTSAA	7 cut(s)	260, 332, 445, 1076, 1094, 1100, 1106
AhdI	GACNNNNNGTC	1 cut(s)	58
AjnI	CCWGG	4 cut(s)	102, 186, 297, 532
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	3 cut(s)	355, 361, 1066
AluI	AGCT	3 cut(s)	355, 361, 1066
Alw26I	GTCTC	5 cut(s)	23, 41, 288, 647, 1043
AlwI	GGATC	1 cut(s)	567
Ama87I	CYCGRG	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	36
AoxI	GGCC	5 cut(s)	106, 273, 563, 723, 1003
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	37, 352
AspS9I	GGNCC	3 cut(s)	106, 301, 1085
AsuC2I	CCSGG	4 cut(s)	123, 277, 710, 1054
AsuHPI	GGTGA	5 cut(s)	103, 403, 566, 680, 685
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	301, 1085
BaeGI	GKGCMC	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	1005
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	7 cut(s)	77, 454, 545, 854, 995, 1019, 1109
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	4 cut(s)	104, 188, 299, 534
BcnI	CCSGG	4 cut(s)	123, 277, 710, 1054
BcoDI	GTCTC	5 cut(s)	23, 41, 288, 647, 1043
BfaI	CTAG	5 cut(s)	80, 131, 417, 570, 669
BfoI	RGCGCY	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	347
BglII	AGATCT	2 cut(s)	9, 334
BisI	GCNGC	2 cut(s)	353, 597
BlsI	GCNGC	2 cut(s)	354, 598
Bme1390I	CCNGG	8 cut(s)	104, 123, 188, 277, 299, 534, 710, 1054
Bme18I	GGWCC	2 cut(s)	301, 1085
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	106, 301, 1085
BmiI	GGNNCC	3 cut(s)	206, 707, 1086
BmrFI	CCNGG	8 cut(s)	104, 123, 188, 277, 299, 534, 710, 1054
BmsI	GCATC	2 cut(s)	163, 454
BoxI	GACNNNNGTC	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	119
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
BpmI	CTGGAG	1 cut(s)	209
BpuMI	CCSGG	4 cut(s)	123, 277, 710, 1054
Bsa29I	ATCGAT	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	639
BsaI	GGTCTC	2 cut(s)	288, 1043
BsaJI	CCNNGG	7 cut(s)	103, 186, 200, 532, 533, 720, 1053
BsaWI	WCCGGW	2 cut(s)	315, 388
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 122, 315, 418, 539, 725
Bse118I	RCCGGY	1 cut(s)	108
BseBI	CCWGG	4 cut(s)	104, 188, 299, 534
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	7 cut(s)	103, 186, 200, 532, 533, 720, 1053
BseLI	CCNNNNNNNGG	6 cut(s)	61, 122, 315, 418, 539, 725
BseMII	CTCAG	2 cut(s)	281, 582
BseSI	GKGCMC	1 cut(s)	588
BseXI	GCAGC	1 cut(s)	364
BseYI	CCCAGC	1 cut(s)	1066
Bsh1236I	CGCG	2 cut(s)	59, 397
BshFI	GGCC	5 cut(s)	108, 275, 565, 725, 1005
BshVI	ATCGAT	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	9 cut(s)	109, 122, 276, 316, 389, 485, 709, 726, 1053
BslFI	GGGAC	2 cut(s)	169, 1098
BslI	CCNNNNNNNGG	6 cut(s)	61, 122, 315, 418, 539, 725
BsmAI	GTCTC	5 cut(s)	23, 41, 288, 647, 1043
BsmFI	GGGAC	2 cut(s)	169, 1098
BsnI	GGCC	5 cut(s)	108, 275, 565, 725, 1005
Bso31I	GGTCTC	2 cut(s)	288, 1043
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	9, 334, 373, 413, 559
BspACI	CCGC	8 cut(s)	89, 344, 467, 482, 540, 596, 779, 1088
BspANI	GGCC	5 cut(s)	108, 275, 565, 725, 1005
BspCNI	CTCAG	2 cut(s)	282, 583
BspDI	ATCGAT	1 cut(s)	549
BspFNI	CGCG	2 cut(s)	59, 397
BspLI	GGNNCC	3 cut(s)	206, 707, 1086
BspPI	GGATC	1 cut(s)	567
BspTNI	GGTCTC	2 cut(s)	288, 1043
BsrBI	CCGCTC	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	7 cut(s)	103, 186, 200, 532, 533, 720, 1053
BssMI	GATC	5 cut(s)	9, 334, 373, 413, 559
BssNI	GRCGYC	1 cut(s)	639
Bst2UI	CCWGG	4 cut(s)	104, 188, 299, 534
Bst6I	CTCTTC	2 cut(s)	1074, 1119
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	3 cut(s)	21, 110, 348
BstDEI	CTNAG	2 cut(s)	290, 591
BstDSI	CCRYGG	1 cut(s)	720
BstFNI	CGCG	2 cut(s)	59, 397
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	37, 352
BstKTI	GATC	5 cut(s)	12, 337, 376, 416, 562
BstMAI	GTCTC	5 cut(s)	23, 41, 288, 647, 1043
BstMBI	GATC	5 cut(s)	9, 334, 373, 413, 559
BstMWI	GCNNNNNNNGC	6 cut(s)	286, 347, 352, 358, 367, 722
BstNI	CCWGG	4 cut(s)	104, 188, 299, 534
BstPAI	GACNNNNGTC	1 cut(s)	398
BstSCI	CCNGG	8 cut(s)	102, 121, 186, 275, 297, 532, 708, 1052
BstSLI	GKGCMC	1 cut(s)	588
BstUI	CGCG	2 cut(s)	59, 397
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	9, 334
BstYI	RGATCY	2 cut(s)	9, 334
Bsu15I	ATCGAT	1 cut(s)	549
BsuRI	GGCC	5 cut(s)	108, 275, 565, 725, 1005
BsuTUI	ATCGAT	1 cut(s)	549
BtgI	CCRYGG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	3 cut(s)	21, 110, 348
CfoI	GCGC	2 cut(s)	37, 352
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	3 cut(s)	106, 301, 1085
ClaI	ATCGAT	1 cut(s)	549
CseI	GACGC	3 cut(s)	48, 403, 647
Csp6I	GTAC	1 cut(s)	966
CviAII	CATG	2 cut(s)	830, 1007
CviQI	GTAC	1 cut(s)	966
DdeI	CTNAG	2 cut(s)	290, 591
DpnI	GATC	5 cut(s)	11, 336, 375, 415, 561
DpnII	GATC	5 cut(s)	9, 334, 373, 413, 559
DriI	GACNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	2 cut(s)	723, 1003
Eam1104I	CTCTTC	2 cut(s)	1074, 1119
Eam1105I	GACNNNNNGTC	1 cut(s)	58
EarI	CTCTTC	2 cut(s)	1074, 1119
Eco31I	GGTCTC	2 cut(s)	288, 1043
Eco47I	GGWCC	2 cut(s)	301, 1085
Eco47III	AGCGCT	1 cut(s)	36
Eco57I	CTGAAG	3 cut(s)	134, 377, 621
Eco88I	CYCGRG	1 cut(s)	199
EcoRII	CCWGG	4 cut(s)	102, 186, 297, 532
FaeI	CATG	2 cut(s)	833, 1010
FaiI	YATR	5 cut(s)	327, 381, 831, 873, 1008
FaqI	GGGAC	2 cut(s)	169, 1098
FatI	CATG	2 cut(s)	829, 1006
FauI	CCCGC	2 cut(s)	351, 533
Fnu4HI	GCNGC	2 cut(s)	353, 597
Fsp4HI	GCNGC	2 cut(s)	353, 597
FspBI	CTAG	5 cut(s)	80, 131, 417, 570, 669
GlaI	GCGC	2 cut(s)	36, 351
GluI	GCNGC	2 cut(s)	353, 597
GsaI	CCCAGC	1 cut(s)	1070
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	5 cut(s)	108, 275, 565, 725, 1005
HapII	CCGG	9 cut(s)	109, 122, 276, 316, 389, 485, 709, 726, 1053
HgaI	GACGC	3 cut(s)	48, 403, 647
HhaI	GCGC	2 cut(s)	37, 352
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	2 cut(s)	833, 1010
Hin6I	GCGC	2 cut(s)	35, 350
HinP1I	GCGC	2 cut(s)	35, 350
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HinfI	GANTC	6 cut(s)	76, 226, 243, 284, 319, 685
HpaI	GTTAAC	1 cut(s)	978
HpaII	CCGG	9 cut(s)	109, 122, 276, 316, 389, 485, 709, 726, 1053
HphI	GGTGA	5 cut(s)	103, 403, 566, 680, 685
Hpy166II	GTNNAC	2 cut(s)	931, 978
Hpy188I	TCNGA	2 cut(s)	209, 235
Hpy188III	TCNNGA	5 cut(s)	80, 131, 142, 160, 199
Hpy8I	GTNNAC	2 cut(s)	931, 978
Hpy99I	CGWCG	4 cut(s)	64, 176, 902, 905
HpyAV	CCTTC	4 cut(s)	158, 576, 596, 966
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	167, 829
HpyF10VI	GCNNNNNNNGC	6 cut(s)	286, 347, 352, 358, 367, 722
HpyF3I	CTNAG	2 cut(s)	290, 591
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	2 cut(s)	833, 1010
HspAI	GCGC	2 cut(s)	35, 350
KroI	GCCGGC	1 cut(s)	108
KroNI	GCCGGC	1 cut(s)	110
KspAI	GTTAAC	1 cut(s)	978
Kzo9I	GATC	5 cut(s)	9, 334, 373, 413, 559
LmnI	GCTCC	6 cut(s)	16, 190, 210, 537, 721, 1063
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	163, 454
MaeI	CTAG	5 cut(s)	80, 131, 417, 570, 669
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	391, 635
MalI	GATC	5 cut(s)	11, 336, 375, 415, 561
MbiI	CCGCTC	1 cut(s)	540
MboI	GATC	5 cut(s)	9, 334, 373, 413, 559
MflI	RGATCY	2 cut(s)	9, 334
MhlI	GDGCHC	1 cut(s)	588
MlsI	TGGCCA	1 cut(s)	1005
MluCI	AATT	1 cut(s)	260
MluI	ACGCGT	2 cut(s)	57, 395
MluNI	TGGCCA	1 cut(s)	1005
MlyI	GAGTC	2 cut(s)	70, 278
MmeI	TCCRAC	2 cut(s)	258, 333
Mox20I	TGGCCA	1 cut(s)	1005
MroNI	GCCGGC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	1005
MseI	TTAA	1 cut(s)	977
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	1005
MspA1I	CMGCKG	2 cut(s)	346, 355
MspI	CCGG	9 cut(s)	109, 122, 276, 316, 389, 485, 709, 726, 1053
MspR9I	CCNGG	8 cut(s)	104, 123, 188, 277, 299, 534, 710, 1054
MvaI	CCWGG	4 cut(s)	104, 188, 299, 534
MvnI	CGCG	2 cut(s)	59, 397
MwoI	GCNNNNNNNGC	6 cut(s)	286, 347, 352, 358, 367, 722
NaeI	GCCGGC	1 cut(s)	110
NciI	CCSGG	4 cut(s)	123, 277, 710, 1054
NdeII	GATC	5 cut(s)	9, 334, 373, 413, 559
NgoMIV	GCCGGC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	833, 1010
NlaIV	GGNNCC	3 cut(s)	206, 707, 1086
NmuCI	GTSAC	2 cut(s)	391, 635
OliI	CACNNNNGTG	1 cut(s)	671
PasI	CCCWGGG	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	897
PdiI	GCCGGC	1 cut(s)	110
PfeI	GAWTC	4 cut(s)	226, 243, 319, 685
PkrI	GCNGC	2 cut(s)	354, 598
PleI	GAGTC	2 cut(s)	70, 278
PpsI	GAGTC	2 cut(s)	70, 278
PshAI	GACNNNNGTC	1 cut(s)	398
Psp6I	CCWGG	4 cut(s)	102, 186, 297, 532
PspFI	CCCAGC	1 cut(s)	1066
PspGI	CCWGG	4 cut(s)	102, 186, 297, 532
PspN4I	GGNNCC	3 cut(s)	206, 707, 1086
PspPI	GGNCC	3 cut(s)	106, 301, 1085
PsuI	RGATCY	2 cut(s)	9, 334
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	967
RsaNI	GTAC	1 cut(s)	966
RseI	CAYNNNNRTG	1 cut(s)	671
SaqAI	TTAA	1 cut(s)	977
SatI	GCNGC	2 cut(s)	353, 597
Sau3AI	GATC	5 cut(s)	9, 334, 373, 413, 559
Sau96I	GGNCC	3 cut(s)	106, 301, 1085
SchI	GAGTC	2 cut(s)	70, 278
ScrFI	CCNGG	8 cut(s)	104, 123, 188, 277, 299, 534, 710, 1054
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	2 cut(s)	163, 454
SinI	GGWCC	2 cut(s)	301, 1085
SmiMI	CAYNNNNRTG	1 cut(s)	671
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	8 cut(s)	89, 344, 467, 482, 540, 596, 779, 1088
SspMI	CTAG	5 cut(s)	80, 131, 417, 570, 669
StyD4I	CCNGG	8 cut(s)	102, 121, 186, 275, 297, 532, 708, 1052
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	4 cut(s)	67, 161, 241, 549
TasI	AATT	1 cut(s)	260
TatI	WGTACW	1 cut(s)	965
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	4 cut(s)	226, 243, 319, 685
Tru1I	TTAA	1 cut(s)	977
Tru9I	TTAA	1 cut(s)	977
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	2 cut(s)	391, 635
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	2 cut(s)	391, 635
TspDTI	ATGAA	3 cut(s)	921, 1047, 1125
TspRI	CASTG	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	301, 1085
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	2 cut(s)	79, 130
XspI	CTAG	5 cut(s)	80, 131, 417, 570, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.