AT3G50760

Galacturonosyltransferase-like 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013971
Physical Location & Seq
Forward (+)
18867834 .. 18869399
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50760.1

Sequence Viewer

Length: 1026 bp
ATGCACTCGAAGTTTATATTATATCTCAGCATCCTCGCCGTATTCACCGTCTCTTTCGCCGGCGGCGAGAGATTCAAAGAAGCTCCAAAGTTCTTCAACTCCCCGGAGTGTCTAACCATCGAAAACGATGAAGATTTCGTTTGTTCAGACAAAGCCATCCACGTGGCAATGACCTTAGACACAGCTTACCTCCGTGGCTCAATGGCCGTGATTCTCTCCGTCCTCCAACACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAAACAAAGCCACCGACTCCAAAACTACGTCGTTGCTTCTTTTCCCTACTTGAAATTCCGAATTTACCCTTACGACGTAGCCGCCATCTCCGGCCTCATCTCAACCTCCATCCGCTCCGCGCTAGACTCTCCGCTAAACTACGCAAGAAACTACCTCGCCGACATTCTTCCCACGTGCCTCTCACGTGTCGTATACCTAGACTCAGATCTCATACTCGTCGATGACATCTCCAAGCTCTTCTCCACTCACATCCCTACCGACGTCGTTTTAGCCGCGCCTGAGTACTGCAACGCAAACTTCACGACTTACTTTACTCCGACGTTTTGGTCAAACCCTTCTCTCTCCATCACACTATCCCTCAACCGCCGTGCTACACCGTGTTACTTCAACACCGGAGTGATGGTCATCGAGTTAAAGAAATGGCGAGAAGGAGATTACACGAGGAAGATCATAGAGTGGATGGAGTTACAAAAACGGATAAGAATCTACGAGTTAGGCTCTTTACCACCGTTTTTACTTGTCTTCGCCGGAAACATAGCTCCGGTAGATCACCGGTGGAACCAACACGGTTTAGGAGGAGATAATTTTAGAGGACTGTGTCGAGATTTGCATCCAGGTCCAGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGTAAGGTTAGATGATGGTCGACCTTGCCCGCTTGATGCACTTTGGGTTCCATATGATTTGTTAGAGTCACGGTTCGACCTTATCGAGAGTTAA

Protein Analysis

341

Amino Acids

38.77

Weight (kDa)

6.55

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 54 - 313 4e-48 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50760
fragaria_vesca FvH4_1g14120
malus_domestica MD02G1155400.v1.1 MD15G1269900.v1.1
prunus_persica Prupe.7G148000_v2.0.a1
pyrus_communis pycom02g12300 pycom15g23400
rosa_chinensis RchiOBHm_Chr2g0102811
rosa_laevigata RLG00000017180
rosa_multiflora Rmu_sc0006537.1_g000025
rosa_roxburghii Rroxscaffold_2G00140310
rosa_rugosa Rorug02G0109500
rosa_samantha Rh2AG158000 Rh2BG164500 Rh2CG164200 Rh2DG163300
rosa_wichuraiana Rw2G012280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 598
AatII GACGTC 1 cut(s) 537
AccBSI CCGCTC 1 cut(s) 387
AccI GTMKAC 2 cut(s) 465, 952
AccII CGCG 2 cut(s) 392, 548
AciI CCGC 8 cut(s) 63, 354, 385, 390, 404, 546, 637, 962
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 2 cut(s) 326, 333
AcvI CACGTG 3 cut(s) 163, 447, 458
AcyI GRCGYC 1 cut(s) 534
AfaI GTAC 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 457
AgeI ACCGGT 1 cut(s) 825
AgsI TTSAA 5 cut(s) 76, 97, 273, 325, 661
AjnI CCWGG 1 cut(s) 886
AleI CACNNNNGTG 1 cut(s) 668
AluBI AGCT 4 cut(s) 83, 185, 508, 812
AluI AGCT 4 cut(s) 83, 185, 508, 812
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 2 cut(s) 204, 364
ApoI RAATTY 2 cut(s) 326, 333
AsiGI ACCGGT 1 cut(s) 825
AspLEI GCGC 2 cut(s) 394, 550
AspS9I GGNCC 1 cut(s) 890
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 37, 815
AvaII GGWCC 1 cut(s) 890
BauI CACGAG 1 cut(s) 712
BbrPI CACGTG 3 cut(s) 163, 447, 458
BbsI GAAGAC 1 cut(s) 787
BccI CCATC 8 cut(s) 125, 164, 365, 389, 626, 667, 727, 941
BceAI ACGGC 3 cut(s) 23, 191, 624
BciT130I CCWGG 1 cut(s) 888
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 395, 470
BglII AGATCT 1 cut(s) 478
BisI GCNGC 3 cut(s) 64, 354, 546
BlsI GCNGC 3 cut(s) 65, 355, 547
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 2 cut(s) 104, 888
Bme18I GGWCC 1 cut(s) 890
BmgT120I GGNCC 1 cut(s) 890
BmiI GGNNCC 2 cut(s) 833, 981
BmrFI CCNGG 2 cut(s) 104, 888
BmsI GCATC 3 cut(s) 39, 892, 958
BpiI GAAGAC 1 cut(s) 787
BplI GAGNNNNNCTC 2 cut(s) 755, 787
BpuMI CCSGG 1 cut(s) 104
BsaAI YACGTR 3 cut(s) 163, 447, 458
BsaBI GATNNNNATC 3 cut(s) 677, 755, 882
BsaHI GRCGYC 1 cut(s) 534
BsaJI CCNNGG 3 cut(s) 102, 193, 929
BsaWI WCCGGW 3 cut(s) 665, 814, 825
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bse118I RCCGGY 2 cut(s) 59, 825
Bse1I ACTGG 1 cut(s) 893
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 3 cut(s) 677, 755, 882
BseBI CCWGG 1 cut(s) 888
BseDI CCNNGG 3 cut(s) 102, 193, 929
BseGI GGATG 6 cut(s) 30, 156, 381, 522, 738, 883
BseJI GATNNNNATC 3 cut(s) 677, 755, 882
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 40, 489, 543
BseNI ACTGG 1 cut(s) 893
BseRI GAGGAG 1 cut(s) 864
Bsh1236I CGCG 2 cut(s) 392, 548
BshFI GGCC 2 cut(s) 206, 366
BshTI ACCGGT 1 cut(s) 825
BsiSI CCGG 7 cut(s) 60, 104, 363, 666, 801, 815, 826
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsnI GGCC 2 cut(s) 206, 366
Bsp143I GATC 3 cut(s) 478, 720, 820
Bsp19I CCATGG 1 cut(s) 929
BspACI CCGC 8 cut(s) 63, 354, 385, 390, 404, 546, 637, 962
BspANI GGCC 2 cut(s) 206, 366
BspCNI CTCAG 3 cut(s) 39, 488, 544
BspFNI CGCG 2 cut(s) 392, 548
BspLI GGNNCC 2 cut(s) 833, 981
BspQI GCTCTTC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 2 cut(s) 59, 825
BsrI ACTGG 1 cut(s) 893
BssAI RCCGGY 2 cut(s) 59, 825
BssECI CCNNGG 3 cut(s) 102, 193, 929
BssMI GATC 3 cut(s) 478, 720, 820
BssNAI GTATAC 1 cut(s) 466
BssNI GRCGYC 1 cut(s) 534
BssSI CACGAG 1 cut(s) 712
BssT1I CCWWGG 1 cut(s) 929
Bst1107I GTATAC 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 712
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 6 cut(s) 49, 651, 783, 842, 870, 1005
Bst6I CTCTTC 2 cut(s) 238, 515
BstACI GRCGYC 1 cut(s) 534
BstBAI YACGTR 3 cut(s) 163, 447, 458
BstC8I GCNNGC 2 cut(s) 61, 962
BstDEI CTNAG 4 cut(s) 26, 175, 475, 552
BstDSI CCRYGG 2 cut(s) 193, 929
BstF5I GGATG 6 cut(s) 30, 156, 381, 522, 738, 883
BstFNI CGCG 2 cut(s) 392, 548
BstHHI GCGC 2 cut(s) 394, 550
BstKTI GATC 3 cut(s) 481, 723, 823
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 3 cut(s) 478, 720, 820
BstNI CCWGG 1 cut(s) 888
BstSCI CCNGG 2 cut(s) 102, 886
BstUI CGCG 2 cut(s) 392, 548
BstV2I GAAGAC 1 cut(s) 787
BstX2I RGATCY 1 cut(s) 478
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 1 cut(s) 478
BstZ17I GTATAC 1 cut(s) 466
BsuRI GGCC 2 cut(s) 206, 366
BtgI CCRYGG 2 cut(s) 193, 929
BtsCI GGATG 6 cut(s) 30, 156, 381, 522, 738, 883
BtsIMutI CAGTG 1 cut(s) 900
Cac8I GCNNGC 2 cut(s) 61, 962
CfoI GCGC 2 cut(s) 394, 550
Cfr10I RCCGGY 2 cut(s) 59, 825
Cfr13I GGNCC 1 cut(s) 890
Csp6I GTAC 1 cut(s) 556
CspAI ACCGGT 1 cut(s) 825
CviAII CATG 1 cut(s) 930
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 4 cut(s) 26, 175, 475, 552
DpnI GATC 3 cut(s) 480, 722, 822
DpnII GATC 3 cut(s) 478, 720, 820
DrdI GACNNNNNNGTC 1 cut(s) 598
DseDI GACNNNNNNGTC 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 238, 515
EarI CTCTTC 2 cut(s) 238, 515
Eco130I CCWWGG 1 cut(s) 929
Eco47I GGWCC 1 cut(s) 890
Eco72I CACGTG 3 cut(s) 163, 447, 458
EcoRII CCWGG 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 929
ErhI CCWWGG 1 cut(s) 929
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 1 cut(s) 933
FaiI YATR 9 cut(s) 17, 22, 466, 485, 725, 809, 931, 985, 987
FatI CATG 1 cut(s) 929
FauI CCCGC 1 cut(s) 969
FauNDI CATATG 1 cut(s) 985
FblI GTMKAC 2 cut(s) 465, 952
Fnu4HI GCNGC 3 cut(s) 64, 354, 546
FokI GGATG 6 cut(s) 17, 143, 368, 509, 745, 870
Fsp4HI GCNGC 3 cut(s) 64, 354, 546
FspBI CTAG 2 cut(s) 395, 470
GlaI GCGC 2 cut(s) 393, 549
GluI GCNGC 3 cut(s) 64, 354, 546
HaeIII GGCC 2 cut(s) 206, 366
HapII CCGG 7 cut(s) 60, 104, 363, 666, 801, 815, 826
HhaI GCGC 2 cut(s) 394, 550
Hin1I GRCGYC 1 cut(s) 534
Hin1II CATG 1 cut(s) 933
Hin6I GCGC 2 cut(s) 392, 548
HinP1I GCGC 2 cut(s) 392, 548
HincII GTYRAC 1 cut(s) 953
HindII GTYRAC 1 cut(s) 953
HinfI GANTC 7 cut(s) 72, 211, 288, 398, 473, 756, 998
HpaII CCGG 7 cut(s) 60, 104, 363, 666, 801, 815, 826
HphI GGTGA 2 cut(s) 37, 815
Hpy166II GTNNAC 2 cut(s) 466, 953
Hpy188I TCNGA 4 cut(s) 148, 332, 478, 591
Hpy188III TCNNGA 3 cut(s) 574, 875, 1018
Hpy8I GTNNAC 2 cut(s) 466, 953
Hpy99I CGWCG 6 cut(s) 305, 350, 494, 536, 539, 595
HpyAV CCTTC 2 cut(s) 618, 695
HpyCH4III ACNGT 6 cut(s) 49, 651, 783, 842, 870, 1005
HpyCH4IV ACGT 7 cut(s) 162, 300, 348, 446, 457, 534, 593
HpyCH4V TGCA 5 cut(s) 4, 561, 883, 907, 971
HpyF3I CTNAG 4 cut(s) 26, 175, 475, 552
HpySE526I ACGT 7 cut(s) 162, 300, 348, 446, 457, 534, 593
Hsp92I GRCGYC 1 cut(s) 534
Hsp92II CATG 1 cut(s) 933
HspAI GCGC 2 cut(s) 392, 548
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 3 cut(s) 478, 720, 820
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 3 cut(s) 88, 392, 817
LweI GCATC 3 cut(s) 39, 892, 958
MaeI CTAG 2 cut(s) 395, 470
MaeII ACGT 7 cut(s) 162, 300, 348, 446, 457, 534, 593
MaeIII GTNAC 4 cut(s) 265, 653, 738, 999
MalI GATC 3 cut(s) 480, 722, 822
MbiI CCGCTC 1 cut(s) 387
MboI GATC 3 cut(s) 478, 720, 820
MboII GAAGA 7 cut(s) 85, 143, 225, 431, 502, 730, 787
MflI RGATCY 1 cut(s) 478
MluCI AATT 3 cut(s) 326, 333, 856
MlyI GAGTC 4 cut(s) 282, 392, 467, 1007
MmeI TCCRAC 2 cut(s) 250, 614
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 2 cut(s) 686, 1024
MslI CAYNNNNRTG 3 cut(s) 161, 668, 912
MspI CCGG 7 cut(s) 60, 104, 363, 666, 801, 815, 826
MspR9I CCNGG 2 cut(s) 104, 888
MvaI CCWGG 1 cut(s) 888
MvnI CGCG 2 cut(s) 392, 548
NaeI GCCGGC 1 cut(s) 61
NciI CCSGG 1 cut(s) 104
NcoI CCATGG 1 cut(s) 929
NdeI CATATG 1 cut(s) 985
NdeII GATC 3 cut(s) 478, 720, 820
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 1 cut(s) 933
NlaIV GGNNCC 2 cut(s) 833, 981
NmuCI GTSAC 2 cut(s) 265, 999
OliI CACNNNNGTG 1 cut(s) 668
PciSI GCTCTTC 1 cut(s) 515
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 1014
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 3 cut(s) 72, 211, 756
PflFI GACNNNGTC 1 cut(s) 870
PinAI ACCGGT 1 cut(s) 825
PkrI GCNGC 3 cut(s) 65, 355, 547
PleI GAGTC 4 cut(s) 282, 392, 467, 1006
PmaCI CACGTG 3 cut(s) 163, 447, 458
PmlI CACGTG 3 cut(s) 163, 447, 458
PpsI GAGTC 4 cut(s) 282, 392, 467, 1006
Ppu21I YACGTR 3 cut(s) 163, 447, 458
Psp6I CCWGG 1 cut(s) 886
PspCI CACGTG 3 cut(s) 163, 447, 458
PspGI CCWGG 1 cut(s) 886
PspN4I GGNNCC 2 cut(s) 833, 981
PspPI GGNCC 1 cut(s) 890
PsuI RGATCY 1 cut(s) 478
PsyI GACNNNGTC 1 cut(s) 870
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 3 cut(s) 161, 668, 912
SalI GTCGAC 1 cut(s) 951
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 2 cut(s) 686, 1024
SatI GCNGC 3 cut(s) 64, 354, 546
Sau3AI GATC 3 cut(s) 478, 720, 820
Sau96I GGNCC 1 cut(s) 890
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 4 cut(s) 282, 392, 467, 1007
ScrFI CCNGG 2 cut(s) 104, 888
SfaNI GCATC 3 cut(s) 39, 892, 958
SgrAI CRCCGGYG 2 cut(s) 59, 825
SinI GGWCC 1 cut(s) 890
SmiMI CAYNNNNRTG 3 cut(s) 161, 668, 912
Sse9I AATT 3 cut(s) 326, 333, 856
SsiI CCGC 8 cut(s) 63, 354, 385, 390, 404, 546, 637, 962
SspMI CTAG 2 cut(s) 395, 470
StyD4I CCNGG 2 cut(s) 102, 886
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 6 cut(s) 49, 651, 783, 842, 870, 1005
TaiI ACGT 7 cut(s) 165, 303, 351, 449, 460, 537, 596
TaqI TCGA 8 cut(s) 8, 120, 492, 681, 874, 952, 1008, 1017
TasI AATT 3 cut(s) 326, 333, 856
TatI WGTACW 1 cut(s) 555
TauI GCSGC 3 cut(s) 66, 356, 548
TfiI GAWTC 3 cut(s) 72, 211, 756
Tru1I TTAA 2 cut(s) 686, 1024
Tru9I TTAA 2 cut(s) 686, 1024
TscAI CASTG 1 cut(s) 900
TseFI GTSAC 2 cut(s) 265, 999
Tsp45I GTSAC 2 cut(s) 265, 999
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 3 cut(s) 182, 208, 763
TspRI CASTG 1 cut(s) 900
Tth111I GACNNNGTC 1 cut(s) 870
VpaK11BI GGWCC 1 cut(s) 890
XapI RAATTY 2 cut(s) 326, 333
XmiI GTMKAC 2 cut(s) 465, 952
XspI CTAG 2 cut(s) 395, 470
ZraI GACGTC 1 cut(s) 535
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.