Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013971

Physical Location & Seq

Genomic Coordinates Forward (+)

14848448 .. 14850227

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG158000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCCTCTGGAATCGCCACCGCCGCTAAAGCTGCTTTGGTTTCTCCTCTTCATCTTAACAACCACCAATGCCGCCGCCCTAACAACAACAATAAGAACAACAACTCATGTTTTCAAAGAAGCGCCAAAGTTTTACAACTCCCCCAGCTGCCCTTCGCTCCAAAACGACTCCACCGTCTGCTCCGACGTGGCAGTCCACGTAGCGATGACCCTCGACGCCGCCTACCTCCGCGGCTCAATGGCGGCGATCCTCTCGGTCCTTCAACACTCTTCATGCCCGGAAAATGTCATCTTCCATTTCGTCGCGGCGGCTTCTTCTTCGAACTCGATACTTCTAACCCAAACCCTGTCGAGGTCGTTCCCGTACTTGAAATTCCGAGTCTACCCCTTCGGCGACTCCGCCGTGGCCGGGCTCATCTCCACCTCTATCCGGTCAGCCCTCGACTGCCCGCTCAACTACGCGCGCAACTACTTGGCCACTCTCCTCCCGCCATGTGTCCGCCGCGTGGTCTACCTCGACTCCGACCTCGTACTCGTCGACGACATTGCCAAGCTGGCCGCCATCCCTCTCGGGCCCCACGCGGTCCTCGCCGCGCCGGAGTACTGCAACGCCAACTTCACCACCTACTTCACGCCGTCGTTTTGGGCCAACCCAACTCTCTCCTTAACCTTCGAGGGCCGTGACGCTTGCTACTTCAACACAGGCGTCATGGTCATCGACCTCGACCGGTGGCGGGCAGGCGGCTACACCAACCGGATCGTCGAGTGGATGGAGCTCCAGAAGCGAATGCGGATCTACGAACTCGGGTCATTGCCTCCTTTTCTCCTAGTCTTCGCTGGAAACATCGCCTCCGTGGACCACCGCTGGAACCAGCACGGCCTCGGAGGCGACAACTTCCGAGGGTTGTGTCGGGATTTGCATCCCGGTCCGGTCAGCCTGCTCCATTGGAGCGGCAAAGGGAAACCGTGGGTCCGGCTCGACTCGAACCGGCCTTGCCCTTTGGATGCTCTGTGGGCCCCTTATGATCTGTTACAGACACCTTTCGCGCTAGAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

352

Amino Acids

39.02

Weight (kDa)

7.09

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	66 - 325	9.8e-48	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50760
fragaria_vesca	FvH4_1g14120
malus_domestica	MD02G1155400.v1.1 MD15G1269900.v1.1
prunus_persica	Prupe.7G148000_v2.0.a1
pyrus_communis	pycom02g12300 pycom15g23400
rosa_chinensis	RchiOBHm_Chr2g0102811
rosa_laevigata	RLG00000017180
rosa_multiflora	Rmu_sc0006537.1_g000025
rosa_roxburghii	Rroxscaffold_2G00140310
rosa_rugosa	Rorug02G0109500
rosa_samantha	Rh2AG158000 Rh2BG164500 Rh2CG164200 Rh2DG163300
rosa_wichuraiana	Rw2G012280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	173, 191
AccBSI	CCGCTC	2 cut(s)	451, 951
AccI	GTMKAC	3 cut(s)	381, 510, 537
AccII	CGCG	8 cut(s)	231, 305, 461, 463, 504, 581, 593, 1046
AclWI	GGATC	3 cut(s)	241, 764, 800
AcoI	YGGCCR	3 cut(s)	405, 474, 555
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	2 cut(s)	216, 705
AfaI	GTAC	3 cut(s)	365, 531, 602
AfiI	CCNNNNNNNGG	5 cut(s)	351, 408, 429, 505, 733
AgeI	ACCGGT	1 cut(s)	726
AgsI	TTSAA	4 cut(s)	115, 263, 370, 697
AjiI	CACGTC	1 cut(s)	187
AluBI	AGCT	4 cut(s)	31, 147, 553, 775
AluI	AGCT	4 cut(s)	31, 147, 553, 775
Alw21I	GWGCWC	1 cut(s)	777
AlwI	GGATC	3 cut(s)	241, 764, 800
Ama87I	CYCGRG	2 cut(s)	569, 803
AoxI	GGCC	9 cut(s)	405, 474, 555, 572, 645, 676, 877, 989, 1014
ApaI	GGGCCC	2 cut(s)	576, 1018
ApeKI	GCWGC	2 cut(s)	31, 147
ApoI	RAATTY	1 cut(s)	371
AsiGI	ACCGGT	1 cut(s)	726
AspLEI	GCGC	5 cut(s)	124, 463, 465, 595, 1048
AsuC2I	CCSGG	3 cut(s)	278, 409, 924
AsuHPI	GGTGA	1 cut(s)	610
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	2 cut(s)	569, 803
AvaII	GGWCC	5 cut(s)	256, 583, 856, 926, 970
BaeGI	GKGCMC	2 cut(s)	576, 1018
BalI	TGGCCA	1 cut(s)	476
BanII	GRGCYC	4 cut(s)	414, 576, 777, 1018
BbsI	GAAGAC	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	2 cut(s)	18, 134
BccI	CCATC	2 cut(s)	569, 763
BceAI	ACGGC	4 cut(s)	386, 619, 663, 892
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BcnI	CCSGG	3 cut(s)	278, 409, 924
BfaI	CTAG	2 cut(s)	827, 1049
BfoI	RGCGCY	1 cut(s)	125
BglI	GCCNNNNNGGC	2 cut(s)	554, 885
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	3 cut(s)	278, 409, 924
Bme18I	GGWCC	5 cut(s)	256, 583, 856, 926, 970
BmeT110I	CYCGRG	2 cut(s)	569, 803
BmgBI	CACGTC	1 cut(s)	187
BmiI	GGNNCC	6 cut(s)	574, 575, 869, 971, 1016, 1017
BmrFI	CCNGG	3 cut(s)	278, 409, 924
BmsI	GCATC	2 cut(s)	928, 994
BpiI	GAAGAC	1 cut(s)	823
BpmI	CTGGAG	1 cut(s)	761
Bpu14I	TTCGAA	1 cut(s)	320
BpuMI	CCSGG	3 cut(s)	278, 409, 924
BsaAI	YACGTR	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	2 cut(s)	216, 705
BsaJI	CCNNGG	6 cut(s)	229, 402, 852, 880, 898, 965
BsaWI	WCCGGW	4 cut(s)	429, 726, 753, 928
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 833, 863
Bsc4I	CCNNNNNNNGG	5 cut(s)	351, 408, 429, 505, 733
Bse118I	RCCGGY	2 cut(s)	726, 987
Bse3DI	GCAATG	2 cut(s)	543, 809
Bse8I	GATNNNNATC	1 cut(s)	918
BseDI	CCNNGG	6 cut(s)	229, 402, 852, 880, 898, 965
BseGI	GGATG	4 cut(s)	561, 774, 919, 1009
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	5 cut(s)	351, 408, 429, 505, 733
BseMI	GCAATG	2 cut(s)	543, 809
BsePI	GCGCGC	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	35, 473
BseSI	GKGCMC	2 cut(s)	576, 1018
BseXI	GCAGC	2 cut(s)	18, 134
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	8 cut(s)	231, 305, 461, 463, 504, 581, 593, 1046
Bsh1285I	CGRYCG	1 cut(s)	727
BshFI	GGCC	9 cut(s)	407, 476, 557, 574, 647, 678, 879, 991, 1016
BshTI	ACCGGT	1 cut(s)	726
BsiEI	CGRYCG	1 cut(s)	727
BsiHKAI	GWGCWC	1 cut(s)	777
BsiHKCI	CYCGRG	2 cut(s)	569, 803
BslI	CCNNNNNNNGG	5 cut(s)	351, 408, 429, 505, 733
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	9 cut(s)	407, 476, 557, 574, 647, 678, 879, 991, 1016
BsoBI	CYCGRG	2 cut(s)	569, 803
Bsp119I	TTCGAA	1 cut(s)	320
Bsp120I	GGGCCC	2 cut(s)	572, 1014
Bsp1286I	GDGCHC	4 cut(s)	414, 576, 777, 1018
Bsp143I	GATC	4 cut(s)	246, 756, 792, 1024
BspANI	GGCC	9 cut(s)	407, 476, 557, 574, 647, 678, 879, 991, 1016
BspFNI	CGCG	8 cut(s)	231, 305, 461, 463, 504, 581, 593, 1046
BspLI	GGNNCC	6 cut(s)	574, 575, 869, 971, 1016, 1017
BspPI	GGATC	3 cut(s)	241, 764, 800
BspT104I	TTCGAA	1 cut(s)	320
BsrBI	CCGCTC	2 cut(s)	451, 951
BsrDI	GCAATG	2 cut(s)	543, 809
BsrFI	RCCGGY	2 cut(s)	726, 987
BssAI	RCCGGY	2 cut(s)	726, 987
BssECI	CCNNGG	6 cut(s)	229, 402, 852, 880, 898, 965
BssHII	GCGCGC	1 cut(s)	461
BssMI	GATC	4 cut(s)	246, 756, 792, 1024
BssNI	GRCGYC	2 cut(s)	216, 705
Bst4CI	ACNGT	2 cut(s)	175, 966
Bst6I	CTCTTC	2 cut(s)	53, 274
BstACI	GRCGYC	2 cut(s)	216, 705
BstBAI	YACGTR	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	7 cut(s)	449, 463, 555, 688, 735, 739, 938
BstDEI	CTNAG	1 cut(s)	1056
BstDSI	CCRYGG	4 cut(s)	229, 402, 852, 965
BstF5I	GGATG	4 cut(s)	561, 774, 919, 1009
BstFNI	CGCG	8 cut(s)	231, 305, 461, 463, 504, 581, 593, 1046
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	5 cut(s)	124, 463, 465, 595, 1048
BstKTI	GATC	4 cut(s)	249, 759, 795, 1027
BstMBI	GATC	4 cut(s)	246, 756, 792, 1024
BstMCI	CGRYCG	1 cut(s)	727
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 28, 31, 554, 587, 781, 885, 1013
BstSCI	CCNGG	3 cut(s)	276, 407, 922
BstSLI	GKGCMC	2 cut(s)	576, 1018
BstUI	CGCG	8 cut(s)	231, 305, 461, 463, 504, 581, 593, 1046
BstV1I	GCAGC	2 cut(s)	18, 134
BstV2I	GAAGAC	1 cut(s)	823
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
BsuRI	GGCC	9 cut(s)	407, 476, 557, 574, 647, 678, 879, 991, 1016
BtgI	CCRYGG	4 cut(s)	229, 402, 852, 965
BtgZI	GCGATG	2 cut(s)	218, 829
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	561, 774, 919, 1009
Cac8I	GCNNGC	7 cut(s)	449, 463, 555, 688, 735, 739, 938
CfoI	GCGC	5 cut(s)	124, 463, 465, 595, 1048
Cfr10I	RCCGGY	2 cut(s)	726, 987
Cfr42I	CCGCGG	1 cut(s)	232
CpoI	CGGWCCG	1 cut(s)	926
CseI	GACGC	3 cut(s)	224, 692, 694
Csp6I	GTAC	3 cut(s)	364, 530, 601
CspAI	ACCGGT	1 cut(s)	726
CspI	CGGWCCG	1 cut(s)	926
CviAII	CATG	4 cut(s)	107, 273, 492, 709
CviQI	GTAC	3 cut(s)	364, 530, 601
DdeI	CTNAG	1 cut(s)	1056
DpnI	GATC	4 cut(s)	248, 758, 794, 1026
DpnII	GATC	4 cut(s)	246, 756, 792, 1024
DrdI	GACNNNNNNGTC	2 cut(s)	173, 191
DseDI	GACNNNNNNGTC	2 cut(s)	173, 191
EaeI	YGGCCR	3 cut(s)	405, 474, 555
Eam1104I	CTCTTC	2 cut(s)	53, 274
EarI	CTCTTC	2 cut(s)	53, 274
EciI	GGCGGA	2 cut(s)	388, 488
Ecl136II	GAGCTC	1 cut(s)	775
Eco24I	GRGCYC	4 cut(s)	414, 576, 777, 1018
Eco47I	GGWCC	5 cut(s)	256, 583, 856, 926, 970
Eco53kI	GAGCTC	1 cut(s)	775
Eco88I	CYCGRG	2 cut(s)	569, 803
EcoICRI	GAGCTC	1 cut(s)	775
EcoO109I	RGGNCCY	2 cut(s)	573, 1015
EcoT38I	GRGCYC	4 cut(s)	414, 576, 777, 1018
FaeI	CATG	4 cut(s)	110, 276, 495, 712
FaiI	YATR	5 cut(s)	108, 274, 493, 710, 1023
FatI	CATG	4 cut(s)	106, 272, 491, 708
FauI	CCCGC	3 cut(s)	456, 495, 726
FblI	GTMKAC	3 cut(s)	381, 510, 537
FokI	GGATG	4 cut(s)	548, 781, 906, 1016
FriOI	GRGCYC	4 cut(s)	414, 576, 777, 1018
FspBI	CTAG	2 cut(s)	827, 1049
GlaI	GCGC	5 cut(s)	123, 462, 464, 594, 1047
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	761
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	9 cut(s)	407, 476, 557, 574, 647, 678, 879, 991, 1016
HgaI	GACGC	3 cut(s)	224, 692, 694
HhaI	GCGC	5 cut(s)	124, 463, 465, 595, 1048
Hin1I	GRCGYC	2 cut(s)	216, 705
Hin1II	CATG	4 cut(s)	110, 276, 495, 712
Hin6I	GCGC	5 cut(s)	122, 461, 463, 593, 1046
HinP1I	GCGC	5 cut(s)	122, 461, 463, 593, 1046
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	7 cut(s)	11, 167, 378, 395, 518, 980, 1052
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	5 cut(s)	196, 382, 511, 538, 856
Hpy188I	TCNGA	5 cut(s)	184, 377, 523, 884, 899
Hpy188III	TCNNGA	3 cut(s)	8, 778, 911
Hpy8I	GTNNAC	5 cut(s)	196, 382, 511, 538, 856
Hpy99I	CGWCG	7 cut(s)	188, 218, 305, 539, 542, 640, 764
HpyAV	CCTTC	4 cut(s)	162, 269, 397, 679
HpyCH4III	ACNGT	2 cut(s)	175, 966
HpyCH4IV	ACGT	2 cut(s)	186, 198
HpyCH4V	TGCA	2 cut(s)	606, 919
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 28, 31, 554, 587, 781, 885, 1013
HpyF3I	CTNAG	1 cut(s)	1056
HpySE526I	ACGT	2 cut(s)	186, 198
Hsp92I	GRCGYC	2 cut(s)	216, 705
Hsp92II	CATG	4 cut(s)	110, 276, 495, 712
HspAI	GCGC	5 cut(s)	122, 461, 463, 593, 1046
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	246, 756, 792, 1024
LmnI	GCTCC	6 cut(s)	162, 185, 772, 780, 945, 948
Lsp1109I	GCAGC	2 cut(s)	18, 134
LweI	GCATC	2 cut(s)	928, 994
MaeI	CTAG	2 cut(s)	827, 1049
MaeII	ACGT	2 cut(s)	186, 198
MaeIII	GTNAC	2 cut(s)	680, 1029
MalI	GATC	4 cut(s)	248, 758, 794, 1026
MbiI	CCGCTC	2 cut(s)	451, 951
MboI	GATC	4 cut(s)	246, 756, 792, 1024
MboII	GAAGA	6 cut(s)	40, 261, 283, 306, 309, 823
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	4 cut(s)	414, 576, 777, 1018
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	1 cut(s)	371
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	5 cut(s)	161, 387, 389, 512, 974
MmeI	TCCRAC	2 cut(s)	207, 546
Mox20I	TGGCCA	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	2 cut(s)	56, 665
Msp20I	TGGCCA	1 cut(s)	476
MspA1I	CMGCKG	3 cut(s)	147, 231, 864
MspR9I	CCNGG	3 cut(s)	278, 409, 924
Mva1269I	GAATGC	1 cut(s)	792
MvnI	CGCG	8 cut(s)	231, 305, 461, 463, 504, 581, 593, 1046
MwoI	GCNNNNNNNGC	8 cut(s)	22, 28, 31, 554, 587, 781, 885, 1013
NciI	CCSGG	3 cut(s)	278, 409, 924
NdeII	GATC	4 cut(s)	246, 756, 792, 1024
NlaIII	CATG	4 cut(s)	110, 276, 495, 712
NlaIV	GGNNCC	6 cut(s)	574, 575, 869, 971, 1016, 1017
NmuCI	GTSAC	1 cut(s)	680
NspV	TTCGAA	1 cut(s)	320
PauI	GCGCGC	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 534
PctI	GAATGC	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	726
PleI	GAGTC	5 cut(s)	161, 386, 389, 512, 974
PpsI	GAGTC	5 cut(s)	161, 386, 389, 512, 974
Ppu21I	YACGTR	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	6 cut(s)	574, 575, 869, 971, 1016, 1017
PspOMI	GGGCCC	2 cut(s)	572, 1014
PsuI	RGATCY	1 cut(s)	792
PteI	GCGCGC	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	147
RsaI	GTAC	3 cut(s)	365, 531, 602
RsaNI	GTAC	3 cut(s)	364, 530, 601
Rsr2I	CGGWCCG	1 cut(s)	926
RsrII	CGGWCCG	1 cut(s)	926
SacI	GAGCTC	1 cut(s)	777
SacII	CCGCGG	1 cut(s)	232
SalI	GTCGAC	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	56, 665
Sau3AI	GATC	4 cut(s)	246, 756, 792, 1024
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	5 cut(s)	161, 387, 389, 512, 974
ScrFI	CCNGG	3 cut(s)	278, 409, 924
SduI	GDGCHC	4 cut(s)	414, 576, 777, 1018
SfaNI	GCATC	2 cut(s)	928, 994
Sfr303I	CCGCGG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	320
SgrBI	CCGCGG	1 cut(s)	232
SgrDI	CGTCGACG	1 cut(s)	536
SinI	GGWCC	5 cut(s)	256, 583, 856, 926, 970
Sse9I	AATT	1 cut(s)	371
SspMI	CTAG	2 cut(s)	827, 1049
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	3 cut(s)	276, 407, 922
TaaI	ACNGT	2 cut(s)	175, 966
TaiI	ACGT	2 cut(s)	189, 201
TaqII	GACCGA	1 cut(s)	244
TasI	AATT	1 cut(s)	371
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	56, 665
Tru9I	TTAA	2 cut(s)	56, 665
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	2 cut(s)	31, 147
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	2 cut(s)	40, 261
TspGWI	ACGGA	1 cut(s)	841
VpaK11BI	GGWCC	5 cut(s)	256, 583, 856, 926, 970
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	3 cut(s)	381, 510, 537
XspI	CTAG	2 cut(s)	827, 1049
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.