FvH4_1g14120

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013971
Physical Location & Seq
Forward (+)
7819965 .. 7821456
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14120.t1

Sequence Viewer

Length: 1047 bp
ATGCCTCTGGAATCGCCATCCCTTCTAAACCCGCTTTGGTTCCTCCTCTTCCTCCTAACCACCAATGCCGCCGCTCTAACAACAACAAAAACTCACGTCTTCAAAGAAGCACCCAAGTTCTACAACTCCCCTACCTGCCCTTCCCTCCACAACGACTCCACCGTCTGCTCCGACGTGGCCGTCCACGTCGCCATGACCCTCGACGCTGCCTACCTCCGCGGCTCAATGGCCGCCATCCTCTCCGTCCTCCAACACTCCTCATGCCCTGAAAACGTCATCTTCCATTTCGTCGCCGCAGCTTCTACCTCAAACTCTATACTTCTAACACAAACATTGACCACCTCTTTCCCATACTTGAAATTCCGAGTCTACCCCTTCGGCGACTCCGCCGTGGCGGGGCTGATCTCCACCTCTATAAGGTCCGCCCTAGACTGCCCTCTCAACTACGCGCGCAACTACTTAGCCACTCTCCTCCCGCCATGTGTCCGCCGCGTCGTCTACCTCGACTCCGACCTCGTACTCGTCGACGACATTGCCAAGCTCGCCGCCACACCTCTCGGCCCCTACGCCGTCCTCGCCGCGCCGGAGTACTGCAACGCCAACTTCACCACGTACTTCACACCGACGTTTTGGGCCAACCCGACTCTCTCCTTAACTTTCGAGGGCCGCGACGCTTGTTACTTCAACACCGGCGTCATGGTCATCGACCTCGACCGGTGGCGTGACGGCGGCTACACCAACAAGATCGTTGAGTGGATGGAGCTTCAGAAGCGAATGCGGATCTACGAGCTCGGTTCTTTACCTCCTTTTCTCCTAGTCTTCGCCGGAAACATCGCCTCCGTCGACCACCGGTGGAACCAGCACGGCCTCGGCGGCGACAACTTCCGGGGGCTTTGTCGGGATTTGCACCCCGGTCCGGTGAGCCTGCTTCATTGGAGCGGCAAAGGGAAACCGTGGGTCCGGCTCGACACAAACCGGCCTTGCCCTTTGGATGCGTTGTGGGCCCCGTATGATCTGTTACAGACACCTTTCGCGCTAGAGTCTTAG

Protein Analysis

349

Amino Acids

38.6

Weight (kDa)

6.29

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 62 - 321 1.7e-47 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50760
fragaria_vesca FvH4_1g14120
malus_domestica MD02G1155400.v1.1 MD15G1269900.v1.1
prunus_persica Prupe.7G148000_v2.0.a1
pyrus_communis pycom02g12300 pycom15g23400
rosa_chinensis RchiOBHm_Chr2g0102811
rosa_laevigata RLG00000017180
rosa_multiflora Rmu_sc0006537.1_g000025
rosa_roxburghii Rroxscaffold_2G00140310
rosa_rugosa Rorug02G0109500
rosa_samantha Rh2AG158000 Rh2BG164500 Rh2CG164200 Rh2DG163300
rosa_wichuraiana Rw2G012280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 161, 179
Acc36I ACCTGC 1 cut(s) 143
AccBSI CCGCTC 2 cut(s) 74, 939
AccI GTMKAC 4 cut(s) 369, 498, 525, 843
AccII CGCG 7 cut(s) 219, 449, 451, 492, 581, 669, 1034
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 2 cut(s) 177, 228
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 749
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 3 cut(s) 519, 590, 614
AfiI CCNNNNNNNGG 3 cut(s) 396, 417, 916
AgeI ACCGGT 2 cut(s) 714, 849
AgsI TTSAA 3 cut(s) 103, 358, 685
AjiI CACGTC 3 cut(s) 97, 175, 187
AluBI AGCT 4 cut(s) 299, 541, 763, 790
AluI AGCT 4 cut(s) 299, 541, 763, 790
Alw21I GWGCWC 1 cut(s) 792
AlwI GGATC 1 cut(s) 788
AoxI GGCC 8 cut(s) 177, 228, 559, 633, 664, 865, 977, 1002
ApaI GGGCCC 1 cut(s) 1006
ApeKI GCWGC 2 cut(s) 206, 296
ApoI RAATTY 1 cut(s) 359
AsiGI ACCGGT 2 cut(s) 714, 849
AspLEI GCGC 4 cut(s) 451, 453, 583, 1036
AspS9I GGNCC 8 cut(s) 420, 560, 633, 664, 914, 958, 1002, 1003
AsuC2I CCSGG 2 cut(s) 887, 912
AsuHPI GGTGA 2 cut(s) 598, 931
AvaII GGWCC 3 cut(s) 420, 914, 958
BaeGI GKGCMC 1 cut(s) 1006
BanII GRGCYC 2 cut(s) 792, 1006
BbsI GAAGAC 2 cut(s) 91, 811
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 2 cut(s) 193, 308
BccI CCATC 3 cut(s) 25, 242, 751
BceAI ACGGC 5 cut(s) 164, 374, 554, 742, 880
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BcnI CCSGG 2 cut(s) 887, 912
BfaI CTAG 3 cut(s) 428, 815, 1037
BfuAI ACCTGC 1 cut(s) 143
BglI GCCNNNNNGGC 1 cut(s) 873
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 2 cut(s) 887, 912
Bme18I GGWCC 3 cut(s) 420, 914, 958
BmgBI CACGTC 3 cut(s) 97, 175, 187
BmgT120I GGNCC 8 cut(s) 420, 560, 633, 664, 914, 958, 1002, 1003
BmiI GGNNCC 6 cut(s) 41, 562, 857, 959, 1004, 1005
BmrFI CCNGG 2 cut(s) 887, 912
BmsI GCATC 1 cut(s) 982
BpiI GAAGAC 2 cut(s) 91, 811
BpuMI CCSGG 2 cut(s) 887, 912
BsaAI YACGTR 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 693
BsaJI CCNNGG 6 cut(s) 217, 390, 868, 886, 910, 953
BsaWI WCCGGW 3 cut(s) 714, 849, 916
BsaXI ACNNNNNCTCC 6 cut(s) 140, 170, 491, 521, 821, 851
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 417, 916
Bse118I RCCGGY 4 cut(s) 689, 714, 849, 975
Bse3DI GCAATG 1 cut(s) 531
BseDI CCNNGG 6 cut(s) 217, 390, 868, 886, 910, 953
BseGI GGATG 4 cut(s) 17, 234, 762, 997
BseLI CCNNNNNNNGG 3 cut(s) 396, 417, 916
BseMI GCAATG 1 cut(s) 531
BsePI GCGCGC 1 cut(s) 449
BseRI GAGGAG 3 cut(s) 35, 247, 461
BseSI GKGCMC 1 cut(s) 1006
BseXI GCAGC 2 cut(s) 193, 308
Bsh1236I CGCG 7 cut(s) 219, 449, 451, 492, 581, 669, 1034
Bsh1285I CGRYCG 1 cut(s) 715
BshFI GGCC 8 cut(s) 179, 230, 561, 635, 666, 867, 979, 1004
BshTI ACCGGT 2 cut(s) 714, 849
BsiEI CGRYCG 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 792
BslI CCNNNNNNNGG 3 cut(s) 396, 417, 916
BsmI GAATGC 1 cut(s) 780
BsnI GGCC 8 cut(s) 179, 230, 561, 635, 666, 867, 979, 1004
Bsp120I GGGCCC 1 cut(s) 1002
Bsp1286I GDGCHC 2 cut(s) 792, 1006
Bsp143I GATC 4 cut(s) 402, 744, 780, 1012
BspANI GGCC 8 cut(s) 179, 230, 561, 635, 666, 867, 979, 1004
BspFNI CGCG 7 cut(s) 219, 449, 451, 492, 581, 669, 1034
BspLI GGNNCC 6 cut(s) 41, 562, 857, 959, 1004, 1005
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 788
BsrBI CCGCTC 2 cut(s) 74, 939
BsrDI GCAATG 1 cut(s) 531
BsrFI RCCGGY 4 cut(s) 689, 714, 849, 975
BssAI RCCGGY 4 cut(s) 689, 714, 849, 975
BssECI CCNNGG 6 cut(s) 217, 390, 868, 886, 910, 953
BssHII GCGCGC 1 cut(s) 449
BssMI GATC 4 cut(s) 402, 744, 780, 1012
BssNI GRCGYC 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 163, 954
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 693
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 3 cut(s) 451, 543, 926
BstDEI CTNAG 2 cut(s) 460, 1044
BstDSI CCRYGG 3 cut(s) 217, 390, 953
BstENI CCTNNNNNAGG 1 cut(s) 415
BstF5I GGATG 4 cut(s) 17, 234, 762, 997
BstFNI CGCG 7 cut(s) 219, 449, 451, 492, 581, 669, 1034
BstHHI GCGC 4 cut(s) 451, 453, 583, 1036
BstKTI GATC 4 cut(s) 405, 747, 783, 1015
BstMBI GATC 4 cut(s) 402, 744, 780, 1012
BstMCI CGRYCG 1 cut(s) 715
BstMWI GCNNNNNNNGC 5 cut(s) 542, 575, 769, 873, 1001
BstSCI CCNGG 2 cut(s) 885, 910
BstSLI GKGCMC 1 cut(s) 1006
BstUI CGCG 7 cut(s) 219, 449, 451, 492, 581, 669, 1034
BstV1I GCAGC 2 cut(s) 193, 308
BstV2I GAAGAC 2 cut(s) 91, 811
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BsuRI GGCC 8 cut(s) 179, 230, 561, 635, 666, 867, 979, 1004
BtgI CCRYGG 3 cut(s) 217, 390, 953
BtgZI GCGATG 1 cut(s) 817
BtrI CACGTC 3 cut(s) 97, 175, 187
BtsCI GGATG 4 cut(s) 17, 234, 762, 997
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 3 cut(s) 451, 543, 926
CfoI GCGC 4 cut(s) 451, 453, 583, 1036
Cfr10I RCCGGY 4 cut(s) 689, 714, 849, 975
Cfr13I GGNCC 8 cut(s) 420, 560, 633, 664, 914, 958, 1002, 1003
Cfr42I CCGCGG 1 cut(s) 220
CpoI CGGWCCG 1 cut(s) 914
CseI GACGC 4 cut(s) 212, 481, 680, 682
Csp6I GTAC 3 cut(s) 518, 589, 613
CspAI ACCGGT 2 cut(s) 714, 849
CspI CGGWCCG 1 cut(s) 914
CviAII CATG 4 cut(s) 193, 261, 480, 697
CviQI GTAC 3 cut(s) 518, 589, 613
DdeI CTNAG 2 cut(s) 460, 1044
DpnI GATC 4 cut(s) 404, 746, 782, 1014
DpnII GATC 4 cut(s) 402, 744, 780, 1012
DrdI GACNNNNNNGTC 2 cut(s) 161, 179
DseDI GACNNNNNNGTC 2 cut(s) 161, 179
EaeI YGGCCR 2 cut(s) 177, 228
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 3 cut(s) 376, 412, 476
Ecl136II GAGCTC 1 cut(s) 790
Eco24I GRGCYC 2 cut(s) 792, 1006
Eco47I GGWCC 3 cut(s) 420, 914, 958
Eco53kI GAGCTC 1 cut(s) 790
Eco57I CTGAAG 1 cut(s) 749
EcoICRI GAGCTC 1 cut(s) 790
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 1003
EcoT38I GRGCYC 2 cut(s) 792, 1006
FaeI CATG 4 cut(s) 196, 264, 483, 700
FaiI YATR 8 cut(s) 194, 262, 317, 352, 416, 481, 698, 1011
FatI CATG 4 cut(s) 192, 260, 479, 696
FauI CCCGC 3 cut(s) 39, 388, 483
FblI GTMKAC 4 cut(s) 369, 498, 525, 843
FokI GGATG 4 cut(s) 4, 221, 769, 1004
FriOI GRGCYC 2 cut(s) 792, 1006
FspBI CTAG 3 cut(s) 428, 815, 1037
GlaI GCGC 4 cut(s) 450, 452, 582, 1035
HaeIII GGCC 8 cut(s) 179, 230, 561, 635, 666, 867, 979, 1004
HgaI GACGC 4 cut(s) 212, 481, 680, 682
HhaI GCGC 4 cut(s) 451, 453, 583, 1036
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 4 cut(s) 196, 264, 483, 700
Hin6I GCGC 4 cut(s) 449, 451, 581, 1034
HinP1I GCGC 4 cut(s) 449, 451, 581, 1034
HincII GTYRAC 2 cut(s) 526, 844
HindII GTYRAC 2 cut(s) 526, 844
HinfI GANTC 7 cut(s) 11, 155, 366, 383, 506, 643, 1040
HphI GGTGA 2 cut(s) 598, 931
Hpy166II GTNNAC 5 cut(s) 184, 370, 499, 526, 844
Hpy188I TCNGA 4 cut(s) 172, 365, 511, 768
Hpy188III TCNNGA 2 cut(s) 8, 899
Hpy8I GTNNAC 5 cut(s) 184, 370, 499, 526, 844
HpyAV CCTTC 3 cut(s) 32, 150, 385
HpyCH4III ACNGT 2 cut(s) 163, 954
HpyCH4IV ACGT 6 cut(s) 96, 174, 186, 273, 611, 626
HpyCH4V TGCA 2 cut(s) 594, 907
HpyF10VI GCNNNNNNNGC 5 cut(s) 542, 575, 769, 873, 1001
HpyF3I CTNAG 2 cut(s) 460, 1044
HpySE526I ACGT 6 cut(s) 96, 174, 186, 273, 611, 626
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 4 cut(s) 196, 264, 483, 700
HspAI GCGC 4 cut(s) 449, 451, 581, 1034
KspI CCGCGG 1 cut(s) 220
Kzo9I GATC 4 cut(s) 402, 744, 780, 1012
LmnI GCTCC 3 cut(s) 173, 760, 936
Lsp1109I GCAGC 2 cut(s) 193, 308
LweI GCATC 1 cut(s) 982
MaeI CTAG 3 cut(s) 428, 815, 1037
MaeII ACGT 6 cut(s) 96, 174, 186, 273, 611, 626
MaeIII GTNAC 3 cut(s) 677, 722, 1017
MalI GATC 4 cut(s) 404, 746, 782, 1014
MbiI CCGCTC 2 cut(s) 74, 939
MboI GATC 4 cut(s) 402, 744, 780, 1012
MboII GAAGA 4 cut(s) 40, 91, 271, 811
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 2 cut(s) 792, 1006
MluCI AATT 1 cut(s) 359
MlyI GAGTC 5 cut(s) 149, 375, 377, 500, 637
MmeI TCCRAC 3 cut(s) 195, 274, 534
MseI TTAA 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 219
MspR9I CCNGG 2 cut(s) 887, 912
Mva1269I GAATGC 1 cut(s) 780
MvnI CGCG 7 cut(s) 219, 449, 451, 492, 581, 669, 1034
MwoI GCNNNNNNNGC 5 cut(s) 542, 575, 769, 873, 1001
NciI CCSGG 2 cut(s) 887, 912
NdeII GATC 4 cut(s) 402, 744, 780, 1012
NlaIII CATG 4 cut(s) 196, 264, 483, 700
NlaIV GGNNCC 6 cut(s) 41, 562, 857, 959, 1004, 1005
NmeAIII GCCGAG 2 cut(s) 537, 849
NmuCI GTSAC 1 cut(s) 722
PauI GCGCGC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 5 cut(s) 159, 501, 522, 666, 840
PctI GAATGC 1 cut(s) 780
PfeI GAWTC 1 cut(s) 11
PinAI ACCGGT 2 cut(s) 714, 849
PleI GAGTC 5 cut(s) 149, 374, 377, 500, 637
PpsI GAGTC 5 cut(s) 149, 374, 377, 500, 637
Ppu21I YACGTR 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 792
PspN4I GGNNCC 6 cut(s) 41, 562, 857, 959, 1004, 1005
PspOMI GGGCCC 1 cut(s) 1002
PspPI GGNCC 8 cut(s) 420, 560, 633, 664, 914, 958, 1002, 1003
PsuI RGATCY 1 cut(s) 780
PteI GCGCGC 1 cut(s) 449
RsaI GTAC 3 cut(s) 519, 590, 614
RsaNI GTAC 3 cut(s) 518, 589, 613
Rsr2I CGGWCCG 1 cut(s) 914
RsrII CGGWCCG 1 cut(s) 914
SacI GAGCTC 1 cut(s) 792
SacII CCGCGG 1 cut(s) 220
SalI GTCGAC 2 cut(s) 524, 842
SaqAI TTAA 1 cut(s) 653
Sau3AI GATC 4 cut(s) 402, 744, 780, 1012
Sau96I GGNCC 8 cut(s) 420, 560, 633, 664, 914, 958, 1002, 1003
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 5 cut(s) 149, 375, 377, 500, 637
ScrFI CCNGG 2 cut(s) 887, 912
SduI GDGCHC 2 cut(s) 792, 1006
SfaNI GCATC 1 cut(s) 982
Sfr303I CCGCGG 1 cut(s) 220
SgrAI CRCCGGYG 2 cut(s) 689, 849
SgrBI CCGCGG 1 cut(s) 220
SgrDI CGTCGACG 1 cut(s) 524
SinI GGWCC 3 cut(s) 420, 914, 958
Sse9I AATT 1 cut(s) 359
SspMI CTAG 3 cut(s) 428, 815, 1037
SstI GAGCTC 1 cut(s) 792
StyD4I CCNGG 2 cut(s) 885, 910
TaaI ACNGT 2 cut(s) 163, 954
TaiI ACGT 6 cut(s) 99, 177, 189, 276, 614, 629
TaqI TCGA 8 cut(s) 201, 504, 525, 660, 705, 711, 843, 966
TasI AATT 1 cut(s) 359
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 653
Tru9I TTAA 1 cut(s) 653
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 2 cut(s) 206, 296
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 1 cut(s) 920
TspGWI ACGGA 2 cut(s) 232, 829
VpaK11BI GGWCC 3 cut(s) 420, 914, 958
XagI CCTNNNNNAGG 1 cut(s) 415
XapI RAATTY 1 cut(s) 359
XmiI GTMKAC 4 cut(s) 369, 498, 525, 843
XspI CTAG 3 cut(s) 428, 815, 1037
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.