pycom15g23400

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013971
Physical Location & Seq
Forward (+)
17473485 .. 17474549
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23400.1

Sequence Viewer

Length: 1065 bp
ATGCTCTCTTTCTTCATCAGCTTCATCTTCCTCTTTACGACCACCACCAATGCCGCCGGCACTACTTCTGAACGACTTAGGGAAGCGCTCGCCGCATCTACCACTCAACGATTCAAGGAAGCACCGAAATTCTACAACTCCCCCAGCTGCCCCGACCTCAACAACCGCGAGAACAAGGTGGCCGTGTGCTCGCATGAGGGGTTCCACGTGGCAATGACCCTCGACGCCGCCTACCTCCGCGGCTCAATGGCTGCCATTCTCTCCGTCCTCCAACACTCCTCCTGTCCGGAAAATGTTATCTTCCACTTCGTGTCCTCCTCCACCTCCAACTCCCAACTCCTCCAGCAAACCATCGCCAAGTCATTTCCCTACTTGAAATTCCGAGTCTACCCCTTCGATGACTCGGCCGTTGCGGGGCTCATCTCGACGTCGATCCGCTCCGCCCTCGACTGCCCGCTCAACTATGCCCGCAACTACCTCGCCAACATCCTACCGACATGTGTCCGCCGTGTCGTCTACCTGGACTCCGACATCATCCTTGTCGACGACATTTCCAAGCTGGCGTCGACCCCGCTGGGCCCCACCCAAGTCCTTGCCGCCCCGGAGTACTGCAACGCCAACTTCACATCCTACTTTACGCCGTCGTTTTGGTCGAACCCGACACTCTCCCTCACCTTCGAGAACCGCAAGGCTTGCTACTTCAACACCGGCGTCATGGTCATCGACTTGGACGAGTGGAGATCGGGCGGGTACACGGATCGGATCGCGGAGTGGATGGAGCTCCAGAAGCGGATGCGGATCTACGAGCTCGGGTCCCTGCCGCCGTTCCTATTGGTTTTCGCCGGAAACATCGCCGCCGTGGACCACCGATGGAACCAGCACGGACTGGGTGGAGATAACTTTCGTGGGTTGTGTCGGGATTTGCATCCGGGTCCGGTGAGCTTGCTGCATTGGAGCGGGAAGGGGAAGCCGTGGGTGAGACTGGACGCCAACCGGCCGTGCCCATTGGATGCTCTGTGGGCCCCATATGATCTGTTACAGACGCCCTTCGCGCTGGAGTCATGA

Protein Analysis

355

Amino Acids

39.6

Weight (kDa)

6.7

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 69 - 327 8.6e-50 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50760
fragaria_vesca FvH4_1g14120
malus_domestica MD02G1155400.v1.1 MD15G1269900.v1.1
prunus_persica Prupe.7G148000_v2.0.a1
pyrus_communis pycom02g12300 pycom15g23400
rosa_chinensis RchiOBHm_Chr2g0102811
rosa_laevigata RLG00000017180
rosa_multiflora Rmu_sc0006537.1_g000025
rosa_roxburghii Rroxscaffold_2G00140310
rosa_rugosa Rorug02G0109500
rosa_samantha Rh2AG158000 Rh2BG164500 Rh2CG164200 Rh2DG163300
rosa_wichuraiana Rw2G012280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 431
AccBSI CCGCTC 3 cut(s) 438, 457, 957
AccI GTMKAC 4 cut(s) 387, 516, 543, 566
AccII CGCG 4 cut(s) 168, 240, 767, 1052
AccIII TCCGGA 1 cut(s) 286
AclWI GGATC 4 cut(s) 427, 765, 770, 806
AcoI YGGCCR 3 cut(s) 180, 405, 995
AcsI RAATTY 2 cut(s) 128, 377
AcvI CACGTG 1 cut(s) 208
AcyI GRCGYC 6 cut(s) 225, 428, 563, 711, 987, 1043
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 2 cut(s) 608, 752
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 414
AflIII ACRYGT 1 cut(s) 497
AgsI TTSAA 3 cut(s) 115, 376, 703
AjnI CCWGG 1 cut(s) 519
AluBI AGCT 6 cut(s) 21, 147, 559, 781, 808, 942
AluI AGCT 6 cut(s) 21, 147, 559, 781, 808, 942
Alw21I GWGCWC 3 cut(s) 191, 783, 810
Alw26I GTCTC 1 cut(s) 973
AlwI GGATC 4 cut(s) 427, 765, 770, 806
Ama87I CYCGRG 1 cut(s) 809
Aor13HI TCCGGA 1 cut(s) 286
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 5 cut(s) 180, 405, 577, 995, 1020
ApaI GGGCCC 2 cut(s) 581, 1024
ApeKI GCWGC 3 cut(s) 147, 251, 946
ApoI RAATTY 2 cut(s) 128, 377
AspLEI GCGC 2 cut(s) 88, 1054
AspS9I GGNCC 7 cut(s) 577, 578, 813, 862, 932, 1020, 1021
AsuC2I CCSGG 2 cut(s) 602, 930
AsuHPI GGTGA 3 cut(s) 664, 949, 988
AvaI CYCGRG 1 cut(s) 809
AvaII GGWCC 3 cut(s) 813, 862, 932
BaeGI GKGCMC 3 cut(s) 581, 1004, 1024
BanII GRGCYC 5 cut(s) 420, 581, 783, 810, 1024
BbrPI CACGTG 1 cut(s) 208
Bbv12I GWGCWC 3 cut(s) 191, 783, 810
BbvI GCAGC 3 cut(s) 134, 238, 933
BccI CCATC 3 cut(s) 359, 769, 864
BceAI ACGGC 8 cut(s) 167, 392, 492, 625, 808, 842, 955, 982
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 521
BcnI CCSGG 2 cut(s) 602, 930
BcoDI GTCTC 1 cut(s) 973
BfoI RGCGCY 1 cut(s) 89
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 3 cut(s) 521, 602, 930
Bme18I GGWCC 3 cut(s) 813, 862, 932
BmeT110I CYCGRG 1 cut(s) 809
BmgT120I GGNCC 7 cut(s) 577, 578, 813, 862, 932, 1020, 1021
BmiI GGNNCC 9 cut(s) 203, 579, 580, 814, 815, 875, 933, 1022, 1023
BmrFI CCNGG 3 cut(s) 521, 602, 930
BmrI ACTGGG 1 cut(s) 896
BmsI GCATC 4 cut(s) 104, 783, 934, 1000
BmuI ACTGGG 1 cut(s) 896
BoxI GACNNNNGTC 1 cut(s) 500
BpmI CTGGAG 2 cut(s) 326, 767
BpuMI CCSGG 2 cut(s) 602, 930
BsaAI YACGTR 1 cut(s) 208
BsaBI GATNNNNATC 2 cut(s) 797, 924
BsaHI GRCGYC 6 cut(s) 225, 428, 563, 711, 987, 1043
BsaJI CCNNGG 4 cut(s) 238, 600, 858, 971
BsaWI WCCGGW 2 cut(s) 286, 934
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse118I RCCGGY 3 cut(s) 56, 707, 993
Bse1I ACTGG 2 cut(s) 891, 987
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 2 cut(s) 797, 924
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 4 cut(s) 238, 600, 858, 971
BseGI GGATG 7 cut(s) 486, 534, 626, 780, 798, 925, 1015
BseJI GATNNNNATC 2 cut(s) 797, 924
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMI GCAATG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 891, 987
BseRI GAGGAG 3 cut(s) 268, 307, 329
BseSI GKGCMC 3 cut(s) 581, 1004, 1024
BseX3I CGGCCG 2 cut(s) 405, 995
BseXI GCAGC 3 cut(s) 134, 238, 933
BseYI CCCAGC 2 cut(s) 143, 574
Bsh1236I CGCG 4 cut(s) 168, 240, 767, 1052
Bsh1285I CGRYCG 2 cut(s) 408, 998
BshFI GGCC 5 cut(s) 182, 407, 579, 997, 1022
BsiEI CGRYCG 2 cut(s) 408, 998
BsiHKAI GWGCWC 3 cut(s) 191, 783, 810
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 8 cut(s) 57, 287, 602, 708, 843, 929, 935, 994
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 1 cut(s) 973
BsmFI GGGAC 1 cut(s) 799
BsnI GGCC 5 cut(s) 182, 407, 579, 997, 1022
BsoBI CYCGRG 1 cut(s) 809
Bsp120I GGGCCC 2 cut(s) 577, 1020
Bsp1286I GDGCHC 7 cut(s) 191, 420, 581, 783, 810, 1004, 1024
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 6 cut(s) 432, 740, 757, 762, 798, 1030
BspANI GGCC 5 cut(s) 182, 407, 579, 997, 1022
BspEI TCCGGA 1 cut(s) 286
BspFNI CGCG 4 cut(s) 168, 240, 767, 1052
BspHI TCATGA 1 cut(s) 1061
BspLI GGNNCC 9 cut(s) 203, 579, 580, 814, 815, 875, 933, 1022, 1023
BspPI GGATC 4 cut(s) 427, 765, 770, 806
BsrBI CCGCTC 3 cut(s) 438, 457, 957
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 3 cut(s) 56, 707, 993
BsrI ACTGG 2 cut(s) 891, 987
BssAI RCCGGY 3 cut(s) 56, 707, 993
BssECI CCNNGG 4 cut(s) 238, 600, 858, 971
BssMI GATC 6 cut(s) 432, 740, 757, 762, 798, 1030
BssNI GRCGYC 6 cut(s) 225, 428, 563, 711, 987, 1043
Bst2UI CCWGG 1 cut(s) 521
BstACI GRCGYC 6 cut(s) 225, 428, 563, 711, 987, 1043
BstAPI GCANNNNNTGC 1 cut(s) 693
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 8 cut(s) 58, 90, 191, 455, 469, 561, 694, 944
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 3 cut(s) 238, 858, 971
BstF5I GGATG 7 cut(s) 486, 534, 626, 780, 798, 925, 1015
BstFNI CGCG 4 cut(s) 168, 240, 767, 1052
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 2 cut(s) 88, 1054
BstKTI GATC 6 cut(s) 435, 743, 760, 765, 801, 1033
BstMAI GTCTC 1 cut(s) 973
BstMBI GATC 6 cut(s) 432, 740, 757, 762, 798, 1030
BstMCI CGRYCG 2 cut(s) 408, 998
BstMWI GCNNNNNNNGC 5 cut(s) 92, 693, 787, 1019, 1051
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 501
BstPAI GACNNNNGTC 1 cut(s) 500
BstSCI CCNGG 3 cut(s) 519, 600, 928
BstSLI GKGCMC 3 cut(s) 581, 1004, 1024
BstUI CGCG 4 cut(s) 168, 240, 767, 1052
BstV1I GCAGC 3 cut(s) 134, 238, 933
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
BstZI CGGCCG 2 cut(s) 405, 995
BsuRI GGCC 5 cut(s) 182, 407, 579, 997, 1022
BtgI CCRYGG 3 cut(s) 238, 858, 971
BtgZI GCGATG 2 cut(s) 337, 835
BtsCI GGATG 7 cut(s) 486, 534, 626, 780, 798, 925, 1015
Cac8I GCNNGC 8 cut(s) 58, 90, 191, 455, 469, 561, 694, 944
CciI TCATGA 1 cut(s) 1061
CfoI GCGC 2 cut(s) 88, 1054
Cfr10I RCCGGY 3 cut(s) 56, 707, 993
Cfr13I GGNCC 7 cut(s) 577, 578, 813, 862, 932, 1020, 1021
Cfr42I CCGCGG 1 cut(s) 241
CseI GACGC 5 cut(s) 233, 552, 700, 995, 1051
Csp6I GTAC 2 cut(s) 607, 751
CviAII CATG 4 cut(s) 194, 498, 715, 1062
CviQI GTAC 2 cut(s) 607, 751
DdeI CTNAG 1 cut(s) 77
DpnI GATC 6 cut(s) 434, 742, 759, 764, 800, 1032
DpnII GATC 6 cut(s) 432, 740, 757, 762, 798, 1030
DraIII CACNNNGTG 1 cut(s) 310
EaeI YGGCCR 3 cut(s) 180, 405, 995
EagI CGGCCG 2 cut(s) 405, 995
EciI GGCGGA 2 cut(s) 430, 494
Ecl136II GAGCTC 2 cut(s) 781, 808
EclXI CGGCCG 2 cut(s) 405, 995
Eco24I GRGCYC 5 cut(s) 420, 581, 783, 810, 1024
Eco47I GGWCC 3 cut(s) 813, 862, 932
Eco47III AGCGCT 1 cut(s) 87
Eco52I CGGCCG 2 cut(s) 405, 995
Eco53kI GAGCTC 2 cut(s) 781, 808
Eco72I CACGTG 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 809
EcoICRI GAGCTC 2 cut(s) 781, 808
EcoO109I RGGNCCY 3 cut(s) 578, 813, 1021
EcoRII CCWGG 1 cut(s) 519
EcoT38I GRGCYC 5 cut(s) 420, 581, 783, 810, 1024
FaeI CATG 4 cut(s) 197, 501, 718, 1065
FaiI YATR 7 cut(s) 195, 465, 499, 716, 1027, 1029, 1063
FaqI GGGAC 1 cut(s) 799
FatI CATG 4 cut(s) 193, 497, 714, 1061
FauI CCCGC 6 cut(s) 406, 462, 476, 579, 740, 950
FauNDI CATATG 1 cut(s) 1027
FblI GTMKAC 4 cut(s) 387, 516, 543, 566
FokI GGATG 7 cut(s) 473, 521, 613, 787, 805, 912, 1022
FriOI GRGCYC 5 cut(s) 420, 581, 783, 810, 1024
GlaI GCGC 2 cut(s) 87, 1053
GsaI CCCAGC 2 cut(s) 147, 578
GsuI CTGGAG 2 cut(s) 326, 767
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 5 cut(s) 182, 407, 579, 997, 1022
HapII CCGG 8 cut(s) 57, 287, 602, 708, 843, 929, 935, 994
HgaI GACGC 5 cut(s) 233, 552, 700, 995, 1051
HhaI GCGC 2 cut(s) 88, 1054
Hin1I GRCGYC 6 cut(s) 225, 428, 563, 711, 987, 1043
Hin1II CATG 4 cut(s) 197, 501, 718, 1065
Hin6I GCGC 2 cut(s) 86, 1052
HinP1I GCGC 2 cut(s) 86, 1052
HincII GTYRAC 2 cut(s) 544, 567
HindII GTYRAC 2 cut(s) 544, 567
HinfI GANTC 5 cut(s) 111, 384, 401, 524, 1058
HpaII CCGG 8 cut(s) 57, 287, 602, 708, 843, 929, 935, 994
HphI GGTGA 3 cut(s) 664, 949, 988
Hpy166II GTNNAC 6 cut(s) 388, 517, 544, 567, 753, 862
Hpy188I TCNGA 4 cut(s) 70, 383, 529, 762
Hpy188III TCNNGA 6 cut(s) 287, 424, 679, 784, 917, 1062
Hpy8I GTNNAC 6 cut(s) 388, 517, 544, 567, 753, 862
Hpy99I CGWCG 6 cut(s) 227, 430, 433, 548, 568, 646
HpyAV CCTTC 4 cut(s) 403, 685, 955, 1057
HpyCH4IV ACGT 2 cut(s) 207, 428
HpyCH4V TGCA 3 cut(s) 612, 925, 949
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 693, 787, 1019, 1051
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 207, 428
Hsp92I GRCGYC 6 cut(s) 225, 428, 563, 711, 987, 1043
Hsp92II CATG 4 cut(s) 197, 501, 718, 1065
HspAI GCGC 2 cut(s) 86, 1052
KflI GGGWCCC 1 cut(s) 813
Kpn2I TCCGGA 1 cut(s) 286
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
KspI CCGCGG 1 cut(s) 241
Kzo9I GATC 6 cut(s) 432, 740, 757, 762, 798, 1030
LmnI GCTCC 4 cut(s) 443, 778, 786, 954
Lsp1109I GCAGC 3 cut(s) 134, 238, 933
LweI GCATC 4 cut(s) 104, 783, 934, 1000
MaeII ACGT 2 cut(s) 207, 428
MaeIII GTNAC 1 cut(s) 1035
MalI GATC 6 cut(s) 434, 742, 759, 764, 800, 1032
MbiI CCGCTC 3 cut(s) 438, 457, 957
MboI GATC 6 cut(s) 432, 740, 757, 762, 798, 1030
MboII GAAGA 3 cut(s) 4, 19, 292
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 7 cut(s) 191, 420, 581, 783, 810, 1004, 1024
MluCI AATT 2 cut(s) 128, 377
MlyI GAGTC 3 cut(s) 393, 395, 518
MmeI TCCRAC 3 cut(s) 295, 351, 552
MroI TCCGGA 1 cut(s) 286
MroNI GCCGGC 1 cut(s) 56
MspA1I CMGCKG 3 cut(s) 147, 240, 574
MspI CCGG 8 cut(s) 57, 287, 602, 708, 843, 929, 935, 994
MspR9I CCNGG 3 cut(s) 521, 602, 930
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 4 cut(s) 168, 240, 767, 1052
MwoI GCNNNNNNNGC 5 cut(s) 92, 693, 787, 1019, 1051
NaeI GCCGGC 1 cut(s) 58
NciI CCSGG 2 cut(s) 602, 930
NdeI CATATG 1 cut(s) 1027
NdeII GATC 6 cut(s) 432, 740, 757, 762, 798, 1030
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 4 cut(s) 197, 501, 718, 1065
NlaIV GGNNCC 9 cut(s) 203, 579, 580, 814, 815, 875, 933, 1022, 1023
NmeAIII GCCGAG 1 cut(s) 383
NspI RCATGY 1 cut(s) 501
PagI TCATGA 1 cut(s) 1061
PciI ACATGT 1 cut(s) 497
PcsI WCGNNNNNNNCGW 2 cut(s) 650, 729
PdiI GCCGGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 111
PleI GAGTC 3 cut(s) 392, 395, 518
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
PpsI GAGTC 3 cut(s) 392, 395, 518
Ppu21I YACGTR 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 813
PscI ACATGT 1 cut(s) 497
PshAI GACNNNNGTC 1 cut(s) 500
Psp124BI GAGCTC 2 cut(s) 783, 810
Psp5II RGGWCCY 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 519
PspCI CACGTG 1 cut(s) 208
PspFI CCCAGC 2 cut(s) 143, 574
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 9 cut(s) 203, 579, 580, 814, 815, 875, 933, 1022, 1023
PspOMI GGGCCC 2 cut(s) 577, 1020
PspPI GGNCC 7 cut(s) 577, 578, 813, 862, 932, 1020, 1021
PspPPI RGGWCCY 1 cut(s) 813
PsuI RGATCY 1 cut(s) 798
PvuII CAGCTG 1 cut(s) 147
RsaI GTAC 2 cut(s) 608, 752
RsaNI GTAC 2 cut(s) 607, 751
SacI GAGCTC 2 cut(s) 783, 810
SacII CCGCGG 1 cut(s) 241
SalI GTCGAC 2 cut(s) 542, 565
Sau3AI GATC 6 cut(s) 432, 740, 757, 762, 798, 1030
Sau96I GGNCC 7 cut(s) 577, 578, 813, 862, 932, 1020, 1021
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 3 cut(s) 393, 395, 518
ScrFI CCNGG 3 cut(s) 521, 602, 930
SduI GDGCHC 7 cut(s) 191, 420, 581, 783, 810, 1004, 1024
SfaNI GCATC 4 cut(s) 104, 783, 934, 1000
Sfr303I CCGCGG 1 cut(s) 241
SgrAI CRCCGGYG 1 cut(s) 707
SgrBI CCGCGG 1 cut(s) 241
SinI GGWCC 3 cut(s) 813, 862, 932
Sse9I AATT 2 cut(s) 128, 377
SstI GAGCTC 2 cut(s) 783, 810
StyD4I CCNGG 3 cut(s) 519, 600, 928
TaiI ACGT 2 cut(s) 210, 431
TasI AATT 2 cut(s) 128, 377
TatI WGTACW 1 cut(s) 606
TauI GCSGC 7 cut(s) 56, 95, 230, 243, 599, 823, 857
TfiI GAWTC 1 cut(s) 111
TseI GCWGC 3 cut(s) 147, 251, 946
TspDTI ATGAA 2 cut(s) 4, 13
TspGWI ACGGA 3 cut(s) 253, 770, 897
VpaK11BI GGWCC 3 cut(s) 813, 862, 932
XapI RAATTY 2 cut(s) 128, 377
XceI RCATGY 1 cut(s) 501
XmiI GTMKAC 4 cut(s) 387, 516, 543, 566
ZraI GACGTC 1 cut(s) 429
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.