AT3G51560

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007766
Physical Location & Seq
Reverse (-)
19121687 .. 19125913
4227 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51560.1

Sequence Viewer

Length: 3762 bp
ATGGTGGATTGCAGCGATGTTTACATCAGCTTCGACAGAAGTGAGGATACGGTGCGGTACTCTTTTGTCAGCCACCTCTGCGCCGCTTTCCGCCGCAGAGGAATATCTTCGTTCATCAGAGAAAACGGCTCCGATTCGGAAAGCAATGGATTCTCCAAGTTGGAGACGTCTAGGGCTTCTGTAGTGGTTTTCTCTGAGAAATACTCGTCATCCAAGTCATGCATGGAGGAGCTGGTCAAGGTTTCCGAACGCCGGCGGAAAAACTGTCTCGCGGTGGTTCCGGTATTTTACCCAGTCACGAAATCGTTTATGAAGAAACAAATCTGGAATTTGGGCGATGTTAGAAGCGATTGGCCAAGTGCTCTATTGGAAACTGTAGACTTACCAGGCCACGAGTTATACGATACGCAAAGTGACTCTGACTTTGTGGAGGAGATTGTGGCTGATGTGCGTGAAAAGCTCAACATGTCAGACAATATTGGAATCTACTCAAAGTTGGGGAAGATAGAAACATTGATTTACAAGCAACCGTGGGGTGTCCGCAGCATAGGAATATGGGGAATGCCCGGCATAGGCAAGACAACTCTTGCTAAAGCTGCTTTTGACCAACTCTCTGGTGACTATGAGGCTTCTTGTTTCATCAAAGACTTTAACAAGGCGTTTCATGAGAAGGGACTTTATGGTTTGTTAGAGGCACACTTTGGGAAAATTCTTAGGGAAGAGCTTGGCATAAAAAGTTCGATTACAAGACCGATCCTCCTTAGAAATGTTTTACGCCATAAAAGAGTTCTTGTCGTTCTTGATGATGTGTGTAAGCCTCTAGATGCAGAGTCCTTTCTTGGAGGGTTTGATTGGTTTTGTCCGGGAAGCTTGATCATCATAACTTCAAGAGATAAACAAGTATTTTCTATATGTCGGGTCGATCAGATATATGAGGTTCCAGGTTTAAATGAGGAAGAGGCTCTGCAGCTATTCTCGCGGTGTGCATTCGGAAAGGAGATTATACATGAGAGTTTGCAGAAACTATCAAAGAAAGTGATTGATTATGCTAATGGAAATCCTTTAGCTCTGATTTTTTTTGGATGTATGTCAAGGAAGAATCCTAAACCTATAGAGATTGCATTCCCCAAAGTCAAGAAATATCTGGCACATGAGATTCATGATGCAGTCAAGAGTACATATGATTCGCTTAGTTCCAACGAGAAGAACATATTTCTTGATATTGCGTGTCTTTTCAGAGGAGAAAATGTCGACTGTGTAATACATCTGCTTGAGGGATGTGGTTTCTTTCCACGTGTTGAAATCAATGTTCTTGTTGAGAAGTGTTTGGTGAGTATGGCAGAAGGCAGGGTTGTGATGCATAATTTGATCCAATCCATAGGTCGCAAAATTATCAATGGAGGAAAGAGGCGTTCCAGACTGTGGAAACCTTTGATAATTAAGTATTTTCTAGAAGATAGACAAGTTTTGGGTAGTGAAGATATTGAAGCCATATTTCTGGACCCATCTGCCTTAAGCTTTGATGTCAATCCTATGGCGTTTGAGAATATGTATAATCTTAGATATCTGAAGATTTGCAGTTCCAATCCTGGAAACCATTATGCTCTACACCTTCCCAAGGGCGTCAAATCCCTACCGGAGGAGTTAAGGTTACTGCACTGGGAACATTTTCCATTGTTATCCTTACCACAAGATTTTAACACTAGAAATCTTGTTATACTCAACATGTGTTACAGTAAACTTCAGAGACTTTGGGAAGGAACCAAGGAACTTGGGATGCTGAAGAGGATCATGCTTTGTCATTCACAACAGCTAGTTGGTATTCAAGAACTCCAAATTGCTCTAAATATGGAGGTAATTGATCTCCAAGGTTGTGCAAGACTACAAAGATTTCTAGCAACAGGTCATTTCCAGCATCTTCGGGTGATAAATCTCTCTGGTTGCATAAAGATCAAAAGTTTCCCAGAGGTTCCACCTAATATTGAGGAGCTGTATCTCAAACAAACTGGCATAAGATCAATACCAACTGTGACCTTCTCTCCACAAGATAACTCATTTATTTATGATCATAAAGATCACAAATTCTTGAATCGGGAGGTCTCGTCTGATTCGCAAAGTCTGTCAATCATGGTTTATCTAGACAACCTCAAAGTTCTTGATCTTTCTCAATGCTTAGAGCTTGAGGATATTCAGGGTATACCAAAAAACCTAAGAAAGTTATATCTTGGTGGTACAGCCATAAAAGAACTGCCTTCGCTCATGCATCTTTCTGAACTGGTTGTATTAGATTTGGAGAACTGCAAACGCCTTCACAAGTTACCAATGGGAATAGGTAACTTGAGTTCTCTTGCGGTGTTAAATCTCTCTGGATGCTCAGAACTTGAGGATATTCAAGGTATCCCAAGAAACTTGGAAGAGTTATATCTTGCTGGCACCGCTATACAGGAAGTGACATCGTTAATCAAGCATCTCTCAGAACTTGTAGTTTTAGATTTACAGAATTGCAAAAGGCTTCAACATCTTCCAATGGAGATTAGTAACTTAAAATCTCTTGTCACACTTAAGCTAACGGATCCATCTGGGATGTCCATAAGAGAAGTATCAACATCAATTATCCAGAATGGTATATCAGAAATTGGCATCAGTAATTTGAATTATCTTCTCTTGACTTTCAATGAGAATGCAGAGCAGCGTAGAGAATATTTGCCTCGACCAAGGCTGCCATCTTCAAGTTTACATGGCTTGGTCCCAAGATTTTATGCCCTAGTATCTTTATCCCTCTTCAATGCATCCTTGATGCATATACCGGAAGAGATTTGTTCCTTGCCTTCAGTAGTGCTGTTGGATCTTGGTCGGAATGGTTTCAGCAAAATCCCTGAAAGCATAAAGCAGTTATCTAAACTACATAGCCTTAGATTAAGACATTGTAGAAACCTCATATTGCTTCCGGCGCTTCCCCAAAGCCTGAAACTGTTGAACGTGCATGGTTGTGTGTCTCTAGAGTCAGTTTCTTGGGGATTTGAGCAGTTTCCTAGTCATTACACCTTCAGCGATTGCTTCAATAAGTCTCCAAAAGTGGCTAGAAAACGAGTTGTAAAAGGCCTGGCTAAAGTAGCAAGCATTGGCAACGAACATCAGCAGGAACTCATCAAAGCACTTGCATTCAGCATTTGCGGGCCTGCAGGAGCAGATCAGGCAACCTCTTATAATTTGCGGGCAGGTTCATTTGCAACGATAGAGATAACTCCTTCCCTGCGAAAGACACTCTTGGGGTTTGCTATCTTCGTTGTAGTATCGTTTTCGGATGATAGTCACAACAACGCTGGGCTTGGCGTTAGGTGCGTAAGCAGATGGAAGACAAAGAAAAGGGTGGTCACTGGTAAAGCAGAGAAAGTGTTTAGGTGTTGGGCTCCGAGAGAAGCTCCTGAGGTTCAAAGGGATCACATGTTTGTGTTTTATGAGGATGCCGAAATGCATCGAGGTGGTGGTGAGGGAAACAAACCAAATATAATGGCTGATCACGTTGAATTTGAATTCCAAGCAGTAAATGGAAGAAACAAGGTCTTAGGCGGTAATTGCATGGTGACAGAATGTGATGTTTGTGTTATAACAGCTGCAACTGGTGCGGCGAGTCTGAGTGTAACAAATGCAAGTAAGGATATGAGTTTAAGTAAGAATCATTCTCCGAAGCTTTCAAGTGTGATTGGTAAGCTTCGATTTAAGCGAGTTGGTAGGTTTGGTGGTTGTGTTTGCCTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

1253

Amino Acids

140.81

Weight (kDa)

8.51

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 6 - 159 3e-19 TIR domain
TIR_2 PF13676 7 - 98 4.4e-06 TIR domain
NB-ARC PF00931 181 - 332 2.6e-17 NB-ARC domain
WHD_ROQ1 PF23282 399 - 465 3.2e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 570 - 589 1.5e-08 Leucine Rich Repeat
LRR_13 PF23286 712 - 796 1.7e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 712 - 832 2.1e-08 Leucine-rich repeat region
LRR_14 PF23598 921 - 995 7e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3207, 3608
AatII GACGTC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 3209
AccB1I GGYRCC 1 cut(s) 2432
AccB7I CCANNNNNTGG 1 cut(s) 1422
AccI GTMKAC 3 cut(s) 378, 1251, 2197
AccII CGCG 2 cut(s) 272, 979
AclWI GGATC 7 cut(s) 748, 1363, 1796, 2567, 2580, 2853, 3447
AcoI YGGCCR 1 cut(s) 353
AcsI RAATTY 5 cut(s) 328, 708, 2081, 3527, 3533
AcuI CTGAAG 5 cut(s) 1589, 1727, 1802, 2814, 3031
AcvI CACGTG 1 cut(s) 1295
AcyI GRCGYC 2 cut(s) 167, 1623
AfaI GTAC 3 cut(s) 59, 1177, 2233
AfiI CCNNNNNNNGG 5 cut(s) 252, 572, 1422, 1618, 1639
AflII CTTAAG 2 cut(s) 1513, 2561
AflIII ACRYGT 4 cut(s) 465, 1294, 1725, 3444
AjnI CCWGG 4 cut(s) 385, 940, 1588, 3102
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 6 cut(s) 158, 272, 1741, 2104, 3000, 3072
AlwI GGATC 7 cut(s) 748, 1363, 1796, 2567, 2580, 2853, 3447
AoxI GGCC 4 cut(s) 353, 388, 3100, 3176
ApeKI GCWGC 7 cut(s) 12, 543, 596, 967, 2689, 2719, 3614
ApoI RAATTY 5 cut(s) 328, 708, 2081, 3527, 3533
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
Asp700I GAANNNNTTC 3 cut(s) 106, 1668, 2861
AspLEI GCGC 2 cut(s) 83, 2953
AspS9I GGNCC 3 cut(s) 1501, 2746, 3176
AsuC2I CCSGG 2 cut(s) 567, 864
AsuHPI GGTGA 5 cut(s) 629, 1342, 1936, 3500, 3595
AvaII GGWCC 2 cut(s) 1501, 2746
AxyI CCTNAGG 1 cut(s) 3426
BalI TGGCCA 1 cut(s) 355
BamHI GGATCC 1 cut(s) 2572
BanI GGYRCC 1 cut(s) 2432
BanII GRGCYC 1 cut(s) 3412
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
BauI CACGAG 1 cut(s) 392
BbrPI CACGTG 1 cut(s) 1295
BbsI GAAGAC 1 cut(s) 3362
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 7 cut(s) 24, 555, 583, 979, 2701, 2706, 3601
BccI CCATC 4 cut(s) 1513, 2584, 2731, 3345
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 4 cut(s) 387, 942, 1590, 3104
BciVI GTATCC 2 cut(s) 40, 2408
BclI TGATCA 3 cut(s) 873, 2065, 3517
BcnI CCSGG 2 cut(s) 567, 864
BcoDI GTCTC 6 cut(s) 158, 272, 1741, 2104, 3000, 3072
BfmI CTRYAG 5 cut(s) 180, 375, 965, 1110, 3180
BfoI RGCGCY 1 cut(s) 2954
BfrI CTTAAG 2 cut(s) 1513, 2561
BfuAI ACCTGC 1 cut(s) 3209
BfuI GTATCC 2 cut(s) 40, 2408
Bme1390I CCNGG 6 cut(s) 387, 567, 864, 942, 1590, 3104
Bme18I GGWCC 2 cut(s) 1501, 2746
BmgT120I GGNCC 3 cut(s) 1501, 2746, 3176
BmrFI CCNGG 6 cut(s) 387, 567, 864, 942, 1590, 3104
BmrI ACTGGG 2 cut(s) 287, 1669
BmuI ACTGGG 2 cut(s) 287, 1669
BpiI GAAGAC 1 cut(s) 3362
BplI GAGNNNNNCTC 4 cut(s) 188, 220, 3406, 3438
BpuEI CTTGAG 4 cut(s) 1292, 2201, 2359, 2402
BpuMI CCSGG 2 cut(s) 567, 864
BsaAI YACGTR 1 cut(s) 1295
BsaBI GATNNNNATC 1 cut(s) 1527
BsaHI GRCGYC 2 cut(s) 167, 1623
BsaI GGTCTC 1 cut(s) 2104
BsaJI CCNNGG 5 cut(s) 530, 1617, 1764, 1867, 2714
BsaWI WCCGGW 3 cut(s) 280, 1636, 2806
Bsc4I CCNNNNNNNGG 5 cut(s) 252, 572, 1422, 1618, 1639
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 6 cut(s) 293, 1664, 2011, 2280, 3382, 3625
Bse21I CCTNAGG 1 cut(s) 3426
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 1527
BseBI CCWGG 4 cut(s) 387, 942, 1590, 3104
BseDI CCNNGG 5 cut(s) 530, 1617, 1764, 1867, 2714
BseGI GGATG 9 cut(s) 209, 1088, 1283, 1782, 2375, 2589, 2789, 3310, 3469
BseJI GATNNNNATC 1 cut(s) 1527
BseLI CCNNNNNNNGG 5 cut(s) 252, 572, 1422, 1618, 1639
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 5 cut(s) 186, 2388, 2487, 3417, 3626
BseNI ACTGG 6 cut(s) 293, 1664, 2011, 2280, 3382, 3625
BseRI GAGGAG 5 cut(s) 242, 446, 1254, 1655, 2000
BseXI GCAGC 7 cut(s) 24, 555, 583, 979, 2701, 2706, 3601
BseYI CCCAGC 1 cut(s) 3323
BsgI GTGCAG 1 cut(s) 1640
Bsh1236I CGCG 2 cut(s) 272, 979
BshFI GGCC 4 cut(s) 355, 390, 3102, 3178
BshNI GGYRCC 1 cut(s) 2432
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 7 cut(s) 253, 281, 567, 863, 1637, 2807, 2948
BslFI GGGAC 2 cut(s) 687, 2732
BslI CCNNNNNNNGG 5 cut(s) 252, 572, 1422, 1618, 1639
BsmAI GTCTC 6 cut(s) 158, 272, 1741, 2104, 3000, 3072
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 687, 2732
BsmI GAATGC 5 cut(s) 567, 986, 1121, 2686, 3161
BsnI GGCC 4 cut(s) 355, 390, 3102, 3178
Bso31I GGTCTC 1 cut(s) 2104
Bsp1286I GDGCHC 2 cut(s) 364, 3412
BspANI GGCC 4 cut(s) 355, 390, 3102, 3178
BspCNI CTCAG 5 cut(s) 187, 2387, 2486, 3418, 3627
BspFNI CGCG 2 cut(s) 272, 979
BspHI TCATGA 2 cut(s) 664, 1159
BspMAI CTGCAG 2 cut(s) 969, 3184
BspMI ACCTGC 1 cut(s) 3209
BspPI GGATC 7 cut(s) 748, 1363, 1796, 2567, 2580, 2853, 3447
BspQI GCTCTTC 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 2432
BspTI CTTAAG 2 cut(s) 1513, 2561
BspTNI GGTCTC 1 cut(s) 2104
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 6 cut(s) 293, 1664, 2011, 2280, 3382, 3625
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 5 cut(s) 530, 1617, 1764, 1867, 2714
BssNAI GTATAC 1 cut(s) 2198
BssNI GRCGYC 2 cut(s) 167, 1623
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 4 cut(s) 1617, 1764, 1867, 2714
Bst1107I GTATAC 1 cut(s) 2198
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 4 cut(s) 387, 942, 1590, 3104
Bst4CI ACNGT 9 cut(s) 52, 266, 376, 531, 1256, 1422, 1736, 2029, 2973
Bst6I CTCTTC 6 cut(s) 714, 951, 1778, 2409, 2786, 2805
BstACI GRCGYC 2 cut(s) 167, 1623
BstAFI CTTAAG 2 cut(s) 1513, 2561
BstAPI GCANNNNNTGC 1 cut(s) 3623
BstBAI YACGTR 1 cut(s) 1295
BstC8I GCNNGC 6 cut(s) 254, 2431, 3118, 3176, 3180, 3216
BstDSI CCRYGG 1 cut(s) 530
BstENI CCTNNNNNAGG 2 cut(s) 1616, 1637
BstF5I GGATG 9 cut(s) 209, 1088, 1283, 1782, 2375, 2589, 2789, 3310, 3469
BstFNI CGCG 2 cut(s) 272, 979
BstH2I RGCGCY 1 cut(s) 2954
BstHHI GCGC 2 cut(s) 83, 2953
BstMAI GTCTC 6 cut(s) 158, 272, 1741, 2104, 3000, 3072
BstNI CCWGG 4 cut(s) 387, 942, 1590, 3104
BstNSI RCATGY 3 cut(s) 469, 1729, 3448
BstSCI CCNGG 6 cut(s) 385, 565, 862, 940, 1588, 3102
BstSFI CTRYAG 5 cut(s) 180, 375, 965, 1110, 3180
BstUI CGCG 2 cut(s) 272, 979
BstV1I GCAGC 7 cut(s) 24, 555, 583, 979, 2701, 2706, 3601
BstV2I GAAGAC 1 cut(s) 3362
BstX2I RGATCY 2 cut(s) 2572, 2845
BstXI CCANNNNNNTGG 2 cut(s) 614, 1498
BstYI RGATCY 2 cut(s) 2572, 2845
BstZ17I GTATAC 1 cut(s) 2198
Bsu36I CCTNAGG 1 cut(s) 3426
BsuI GTATCC 2 cut(s) 40, 2408
BsuRI GGCC 4 cut(s) 355, 390, 3102, 3178
BtgI CCRYGG 1 cut(s) 530
BtgZI GCGATG 2 cut(s) 30, 351
BtsCI GGATG 9 cut(s) 209, 1088, 1283, 1782, 2375, 2589, 2789, 3310, 3469
BtsIMutI CAGTG 2 cut(s) 1657, 3375
BveI ACCTGC 1 cut(s) 3209
Cac8I GCNNGC 6 cut(s) 254, 2431, 3118, 3176, 3180, 3216
CciI TCATGA 2 cut(s) 664, 1159
CfoI GCGC 2 cut(s) 83, 2953
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 3 cut(s) 1501, 2746, 3176
CseI GACGC 1 cut(s) 1612
Csp6I GTAC 3 cut(s) 58, 1176, 2232
CviQI GTAC 3 cut(s) 58, 1176, 2232
DraI TTTAAA 1 cut(s) 948
EaeI YGGCCR 1 cut(s) 353
Eam1104I CTCTTC 6 cut(s) 714, 951, 1778, 2409, 2786, 2805
EarI CTCTTC 6 cut(s) 714, 951, 1778, 2409, 2786, 2805
EciI GGCGGA 2 cut(s) 80, 271
Eco130I CCWWGG 4 cut(s) 1617, 1764, 1867, 2714
Eco147I AGGCCT 1 cut(s) 3102
Eco24I GRGCYC 1 cut(s) 3412
Eco31I GGTCTC 1 cut(s) 2104
Eco32I GATATC 1 cut(s) 1565
Eco47I GGWCC 2 cut(s) 1501, 2746
Eco57I CTGAAG 5 cut(s) 1589, 1727, 1802, 2814, 3031
Eco72I CACGTG 1 cut(s) 1295
Eco81I CCTNAGG 1 cut(s) 3426
EcoNI CCTNNNNNAGG 2 cut(s) 1616, 1637
EcoRI GAATTC 1 cut(s) 3533
EcoRII CCWGG 4 cut(s) 385, 940, 1588, 3102
EcoRV GATATC 1 cut(s) 1565
EcoT14I CCWWGG 4 cut(s) 1617, 1764, 1867, 2714
EcoT22I ATGCAT 6 cut(s) 224, 1362, 2265, 2791, 2802, 3477
EcoT38I GRGCYC 1 cut(s) 3412
ErhI CCWWGG 4 cut(s) 1617, 1764, 1867, 2714
Esp3I CGTCTC 1 cut(s) 158
FalI AAGNNNNNCTT 2 cut(s) 3251, 3283
FaqI GGGAC 2 cut(s) 687, 2732
FauI CCCGC 2 cut(s) 3167, 3207
FauNDI CATATG 1 cut(s) 1180
FbaI TGATCA 3 cut(s) 873, 2065, 3517
FblI GTMKAC 3 cut(s) 378, 1251, 2197
FokI GGATG 9 cut(s) 196, 1095, 1290, 1789, 2382, 2596, 2776, 3317, 3476
FriOI GRGCYC 1 cut(s) 3412
GlaI GCGC 2 cut(s) 82, 2952
GsaI CCCAGC 1 cut(s) 3327
HaeII RGCGCY 1 cut(s) 2954
HaeIII GGCC 4 cut(s) 355, 390, 3102, 3178
HapII CCGG 7 cut(s) 253, 281, 567, 863, 1637, 2807, 2948
HgaI GACGC 1 cut(s) 1612
HhaI GCGC 2 cut(s) 83, 2953
Hin1I GRCGYC 2 cut(s) 167, 1623
Hin6I GCGC 2 cut(s) 81, 2951
HinP1I GCGC 2 cut(s) 81, 2951
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HindIII AAGCTT 4 cut(s) 868, 1516, 3689, 3710
HpaII CCGG 7 cut(s) 253, 281, 567, 863, 1637, 2807, 2948
HphI GGTGA 5 cut(s) 629, 1342, 1936, 3500, 3595
Hpy166II GTNNAC 6 cut(s) 22, 379, 1252, 1739, 2198, 2735
Hpy8I GTNNAC 6 cut(s) 22, 379, 1252, 1739, 2198, 2735
HpyCH4III ACNGT 9 cut(s) 52, 266, 376, 531, 1256, 1422, 1736, 2029, 2973
HpyCH4IV ACGT 4 cut(s) 167, 1294, 2979, 3522
HpySE526I ACGT 4 cut(s) 167, 1294, 2979, 3522
Hsp92I GRCGYC 2 cut(s) 167, 1623
HspAI GCGC 2 cut(s) 81, 2951
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
Ksp22I TGATCA 3 cut(s) 873, 2065, 3517
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 6 cut(s) 134, 229, 1987, 3185, 3415, 3427
Lsp1109I GCAGC 7 cut(s) 24, 555, 583, 979, 2701, 2706, 3601
MaeII ACGT 4 cut(s) 167, 1294, 2979, 3522
MflI RGATCY 2 cut(s) 2572, 2845
MhlI GDGCHC 2 cut(s) 364, 3412
MlsI TGGCCA 1 cut(s) 355
MluNI TGGCCA 1 cut(s) 355
MlyI GAGTC 4 cut(s) 410, 839, 3011, 3640
MmeI TCCRAC 4 cut(s) 141, 1221, 2823, 2834
Mox20I TGGCCA 1 cut(s) 355
Mph1103I ATGCAT 6 cut(s) 224, 1362, 2265, 2791, 2802, 3477
MreI CGCCGGCG 1 cut(s) 252
MroNI GCCGGC 1 cut(s) 252
MroXI GAANNNNTTC 3 cut(s) 106, 1668, 2861
MscI TGGCCA 1 cut(s) 355
MslI CAYNNNNRTG 3 cut(s) 2988, 3449, 3480
Msp20I TGGCCA 1 cut(s) 355
MspA1I CMGCKG 1 cut(s) 3614
MspCI CTTAAG 2 cut(s) 1513, 2561
MspI CCGG 7 cut(s) 253, 281, 567, 863, 1637, 2807, 2948
MspR9I CCNGG 6 cut(s) 387, 567, 864, 942, 1590, 3104
Mva1269I GAATGC 5 cut(s) 567, 986, 1121, 2686, 3161
MvaI CCWGG 4 cut(s) 387, 942, 1590, 3104
MvnI CGCG 2 cut(s) 272, 979
NaeI GCCGGC 1 cut(s) 254
NciI CCSGG 2 cut(s) 567, 864
NdeI CATATG 1 cut(s) 1180
NgoMIV GCCGGC 1 cut(s) 252
NmuCI GTSAC 9 cut(s) 295, 413, 617, 2029, 2449, 2554, 3311, 3373, 3583
NsiI ATGCAT 6 cut(s) 224, 1362, 2265, 2791, 2802, 3477
NspI RCATGY 3 cut(s) 469, 1729, 3448
PagI TCATGA 2 cut(s) 664, 1159
PceI AGGCCT 1 cut(s) 3102
PciI ACATGT 3 cut(s) 465, 1725, 3444
PciSI GCTCTTC 1 cut(s) 714
PcsI WCGNNNNNNNCGW 2 cut(s) 399, 3721
PctI GAATGC 5 cut(s) 567, 986, 1121, 2686, 3161
PdiI GCCGGC 1 cut(s) 254
PdmI GAANNNNTTC 3 cut(s) 106, 1668, 2861
PfeI GAWTC 9 cut(s) 134, 150, 483, 1099, 1156, 1184, 2089, 2108, 3676
PflMI CCANNNNNTGG 1 cut(s) 1422
PfoI TCCNGGA 2 cut(s) 862, 1588
PleI GAGTC 4 cut(s) 410, 838, 3010, 3639
PmaCI CACGTG 1 cut(s) 1295
PmlI CACGTG 1 cut(s) 1295
PpsI GAGTC 4 cut(s) 410, 838, 3010, 3639
Ppu21I YACGTR 1 cut(s) 1295
PscI ACATGT 3 cut(s) 465, 1725, 3444
PsiI TTATAA 2 cut(s) 3207, 3608
Psp6I CCWGG 4 cut(s) 385, 940, 1588, 3102
PspCI CACGTG 1 cut(s) 1295
PspFI CCCAGC 1 cut(s) 3323
PspGI CCWGG 4 cut(s) 385, 940, 1588, 3102
PspPI GGNCC 3 cut(s) 1501, 2746, 3176
PsrI GAACNNNNNNTAC 2 cut(s) 2326, 2358
PstI CTGCAG 2 cut(s) 969, 3184
PsuI RGATCY 2 cut(s) 2572, 2845
PvuII CAGCTG 1 cut(s) 3614
RsaI GTAC 3 cut(s) 59, 1177, 2233
RsaNI GTAC 3 cut(s) 58, 1176, 2232
RseI CAYNNNNRTG 3 cut(s) 2988, 3449, 3480
SalI GTCGAC 1 cut(s) 1250
SapI GCTCTTC 1 cut(s) 714
Sau96I GGNCC 3 cut(s) 1501, 2746, 3176
SbfI CCTGCAGG 1 cut(s) 3184
SchI GAGTC 4 cut(s) 410, 839, 3011, 3640
ScrFI CCNGG 6 cut(s) 387, 567, 864, 942, 1590, 3104
SdaI CCTGCAGG 1 cut(s) 3184
SduI GDGCHC 2 cut(s) 364, 3412
SfcI CTRYAG 5 cut(s) 180, 375, 965, 1110, 3180
SgrAI CRCCGGYG 1 cut(s) 252
SinI GGWCC 2 cut(s) 1501, 2746
SmiMI CAYNNNNRTG 3 cut(s) 2988, 3449, 3480
SmlI CTYRAG 6 cut(s) 1271, 1513, 2180, 2338, 2381, 2561
SmoI CTYRAG 6 cut(s) 1271, 1513, 2180, 2338, 2381, 2561
Sse8387I CCTGCAGG 1 cut(s) 3184
SseBI AGGCCT 1 cut(s) 3102
SspI AATATT 3 cut(s) 478, 1981, 2702
StuI AGGCCT 1 cut(s) 3102
StyD4I CCNGG 6 cut(s) 385, 565, 862, 940, 1588, 3102
StyI CCWWGG 4 cut(s) 1617, 1764, 1867, 2714
TaaI ACNGT 9 cut(s) 52, 266, 376, 531, 1256, 1422, 1736, 2029, 2973
TaiI ACGT 4 cut(s) 170, 1297, 2982, 3525
TaqI TCGA 7 cut(s) 33, 740, 921, 1251, 2710, 3478, 3715
TaqII GACCGA 1 cut(s) 766
TatI WGTACW 1 cut(s) 1175
TauI GCSGC 3 cut(s) 86, 96, 3629
TfiI GAWTC 9 cut(s) 134, 150, 483, 1099, 1156, 1184, 2089, 2108, 3676
TscAI CASTG 2 cut(s) 1664, 3382
TseFI GTSAC 9 cut(s) 295, 413, 617, 2029, 2449, 2554, 3311, 3373, 3583
TseI GCWGC 7 cut(s) 12, 543, 596, 967, 2689, 2719, 3614
Tsp45I GTSAC 9 cut(s) 295, 413, 617, 2029, 2449, 2554, 3311, 3373, 3583
TspDTI ATGAA 6 cut(s) 103, 326, 628, 653, 1148, 3213
TspGWI ACGGA 1 cut(s) 2585
TspRI CASTG 2 cut(s) 1664, 3382
Van91I CCANNNNNTGG 1 cut(s) 1422
Vha464I CTTAAG 2 cut(s) 1513, 2561
VpaK11BI GGWCC 2 cut(s) 1501, 2746
XagI CCTNNNNNAGG 2 cut(s) 1616, 1637
XapI RAATTY 5 cut(s) 328, 708, 2081, 3527, 3533
XbaI TCTAGA 4 cut(s) 820, 1450, 2137, 2998
XceI RCATGY 3 cut(s) 469, 1729, 3448
XcmI CCANNNNNNNNNTGG 2 cut(s) 220, 3545
XmiI GTMKAC 3 cut(s) 378, 1251, 2197
XmnI GAANNNNTTC 3 cut(s) 106, 1668, 2861
ZraI GACGTC 1 cut(s) 168
Zsp2I ATGCAT 6 cut(s) 224, 1362, 2265, 2791, 2802, 3477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.