AT5G17890

actinin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007766
Physical Location & Seq
Forward (+)
5916862 .. 5923494
6633 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17890.1

Sequence Viewer

Length: 4842 bp
ATGGAACCACCAGCTGCTCGTGTAACGCCGTCGATTAAGGCCGACTGTAGTCACAGCGTCAACATCATCTGCGAGGAAACAGTACTGCACTCCCTTGTCAGCCACCTCTCGGCCGCTTTACGCCGGGAAGGCATATCTGTGTTTGTGGATGCGTGCGGATTGCAGGAAACCAAGTTCTTCTCCATTAAACAGAATCAGCCGTTGACAGATGGGGCTAGGGTTTTGGTGGTGGTTATTTCCGACGAGGTGGAGTTCTACGATCCTTGGTTTCCTAAGTTCTTAAAGGTTATCCAGGGTTGGCAAAACAACGGCCACGTGGTGGTTCCAGTCTTCTACGGCGTCGATTCGTTGACCCGAGTTTACGGGTGGGCCAATAGTTGGCTGGAGGCCGAAAAATTAACCAGCCACCAATCAAAGATCTTAAGCAATAATGTACTCACGGACTCCGAACTAGTGGAAGAGATCGTCAGAGATGTTTATGGGAAGCTTTATCCTGCAGAACGAGTTGGAATTTACGCGAGGCTACTAGAGATAGAAAAGTTGCTTTACAAGCAACATAGGGACATCCGAAGCATAGGAATTTGGGGTATGCCTGGCATAGGCAAGACGACGCTTGCTAAAGCAGTCTTTAATCACATGTCCACTGATTATGATGCTTCTTGCTTCATCGAGAACTTTGATGAAGCTTTTCATAAGGAGGGACTCCACCGTTTGCTCAAAGAAAGAATTGGTAAAATTCTAAAGGATGAGTTTGACATAGAAAGTTCGTATATTATGAGACCGACCCTCCATAGGGACAAATTATACGATAAAAGGATTCTTGTTGTTTTAGATGATGTGCGCGATTCCCTTGCTGCAGAGTCCTTCCTTAAAAGGCTTGATTGGTTTGGTTCCGGAAGCCTTATAATCATAACCTCCGTTGATAAACAAGTGTTTGCCTTTTGTCAGATCAATCAAATATACACGGTTCAAGGTTTAAATGTGCACGAGGCTCTGCAGCTTTTCTCCCAAAGCGTATTTGGAATAAACGAGCCAGAGCAGAATGACAGGAAACTGTCAATGAAGGTGATTGACTATGTTAATGGAAACCCGTTAGCTCTCAGCATTTACGGCCGAGAGCTAATGGGGAAGAAGTCAGAAATGGAGACTGCATTCTTCGAGCTCAAGCATTGTCCTCCCTTAAAGATTCAGGATGTGCTAAAAAACGCTTATAGTGCACTTAGCGACAATGAGAAGAACATTGTTTTGGACATTGCTTTTTTCTTCAAGGGAGAAACTGTCAATTATGTGATGCAGCTGCTTGAGGAATCTCATTACTTTCCACGTCTTGCAATAGATGTTCTTGTGGACAAGTGTGTGTTAACTATCTCAGAAAACACAGTGCAAATGAATAATTTGATCCAAGACACCTGCCAAGAAATCTTCAATGGAGAAATTGAGACCTGCACCAGAATGTGGGAACCTTCCAGAATCAGATATCTGCTAGAATATGATGAACTTGAAGGAAGTGGAGAAACCAAAGCAATGCCTAAATCTGGTCTGGTCGCTGAACACATCGAAAGCATATTCCTGGACACTTCAAACGTGAAATTTGATGTCAAACACGATGCATTCAAGAATATGTTTAATCTCAAATTCCTAAAGATATACAATTCATGCTCTAAATATATTTCTGGACTCAATTTTCCAAAGGGCCTCGATTCTCTGCCTTATGAGCTAAGGCTCCTCCACTGGGAGAACTACCCTTTGCAATCCTTGCCTCAAGATTTTGACTTTGGACACCTTGTTAAGCTCAGTATGCCTTACAGCCAGCTTCATAAACTCGGGACAAGAGTCAAGGACCTTGTGATGTTAAAGAGGCTCATTCTTTCTCATTCTTTACAGCTAGTTGAATGTGACATACTAATATATGCTCAAAATATCGAGCTAATTGATCTTCAAGGCTGTACAGGATTGCAAAGATTTCCAGACACGAGTCAATTACAGAATCTCCGGGTAGTAAATCTCTCAGGTTGCACAGAGATCAAATGTTTCTCAGGGGTTCCACCAAATATTGAGGAATTACATCTCCAAGGAACTCGTATAAGGGAAATACCAATATTCAATGCGACCCATCCCCCCAAGGTTAAGCTGGACCGGAAAAAGCTTTGGAATCTTCTAGAAAACTTCTCGGATGTTGAGCATATCGATTTGGAGTGTGTAACAAATCTAGCTACAGTTACCTCAAATAATCATGTTATGGGCAAGCTTGTCTGCTTGAATATGAAATATTGTTCCAATTTGCGAGGCCTTCCTGACATGGTCAGTTTAGAATCTCTCAAAGTTCTTTATCTGTCGGGCTGTTCAGAGCTTGAGAAAATTATGGGTTTCCCGAGAAACTTGAAAAAACTATATGTTGGTGGAACCGCCATACGAGAATTGCCACAGCTTCCCAACAGTCTAGAATTCCTGAATGCTCATGGTTGTAAGCATCTGAAGTCAATTAATTTGGATTTTGAGCAGCTTCCTAGGCACTTCATCTTCAGTAATTGTTATAGATTTTCTTCACAAGTGATCGCTGAGTTCGTAGAGAAAGGTCTTGTAGCAAGTTTAGCAAGAGCAAAACAAGAGGAACTCATCAAAGCACCTGAAGTCATCATCTGTATTCCTATGGACACACGGCAGAGATCCTCCTTTCGCTTGCAAGCAGGTCGAAATGCAATGACAGACTTAGTTCCGTGGATGCAAAAACCTATCTCAGGCTTTTCTATGTCAGTTGTAGTATCATTTCAAGATGATTACCACAATGATGTAGGTCTTCGCATTAGGTGTGTAGGTACATGGAAGACCTGGAACAACCAGCCTGATAGAATAGTTGAGAGATTTTTTCAATGTTGGGCTCCTACCGAAGCTCCAAAAGTTGTAGCGGATCACATTTTTGTCTTGTATGATACCAAAATGCATCCTAGTGATAGTGAAGAAAACCACATCAGTATGTGGGCTCATGAAGTCAAATTTGAATTCCACACAGTGAGTGGGGAAAACAATCCTCTAGGTGCTAGTTGCAAGGTGACTGAATGTGGTGTCGAGGTAATTACAGCTGCAACAGGTGATACTAGTGTTAGTGGAATTATAAGAGAAAGTGAAACTATAACTATTATCGAGAAGGAGGATACTATTATTGATGAGGAGGATACTCCTCTTTTGTCCAGAAAGCCAGAGGAAACGAATCGTTCTCGTTCATCTAGCGAATTACAGAAGCTTTCTAGTACGTCAAGTAAGGTAAGATCTAAGGGAAATGTGTTTTGGAAGTGGTTAGGTTGTTTTCCCCTGCAGCCAAAAAACTTGAGATCTAGAAGTAGGCGCACAACAGCGTTAGAAGAAGCGTTAGAAGAAGCATTAAAAGAAAGAGAAAAATTAGAGGACACCAGAGAGTTACAAATAGCATTAATAGAGTCAAAGAAGATAAAAAAAATAAAGCAAGCAGACGAAAGGGATCAAATAAAGCACGCAGACGAAAGGGAACAAAGAAAGCATTCCAAAGATCATGAGGAAGAAGAAATAGAGTCAAATGAGAAAGAAGAAAGAAGGCATTCCAAAGATTATGTGATAGAAGAATTAGTGTTAAAGGGGAAAGGTAAAAGAAAGCAACTGGATGATGATAAAGCCGACGAAAAGGAACAAATAAAGCATTCCAAAGATCATGTGGAAGAAGAAGTGAATCCTCCTCTTAGCAAATGCAAGGATTGCAAATCTGCAATTGAAGATGGAATATCTATCAATGCCTACGGTTCTGTTTGGCATCCTCAATGTTTCTGTTGCCTTCGTTGTCGGGAGCCTATTGCTATGAACGAGATTTCAGACTTAAGAGGAATGTATCACAAACCTTGCTACAAGGAGCTCCGTCATCCGAATTGCTATGTCTGCGAAAAAAAGATTCCTCGTACTGCGGAAGGTTTAAAGTACCATGAGCATCCGTTCTGGATGGAAACATACTGCCCTTCTCATGATGGTGATGGAACTCCCAAATGTTGTAGCTGTGAAAGATTAGAGCATTGCGGAACACAGTATGTAATGCTTGCAGATTTTCGATGGCTATGTCGAGAATGTATGGACAGCGCGATTATGGATTCTGATGAATGCCAACCTTTGCACTTTGAAATCCGTGAATTCTTTGAGGGCTTACACATGAAGATTGAGGAAGAATTTCCTGTTTATTTGGTGGAGAAAAATGCTCTGAATAAAGCTGAGAAGGAAGAGAAGATTGACAAACAGGGGGATCAGTGTCTGATGGTAGTCAGAGGTATTTGCCTATCTGAAGAGCAGATTGTCACAAGTGTCTCACAAGGAGTAAGGAGGATGTTGAATAAGCAGATACTAGATACGGTTACAGAGTCTCAAAGGGTTGTTCGCAAGTGCGAGGTCACTGCAATTCTCATCTTATATGGGCTTCCTAGGTTACTCACAGGATATATCTTGGCCCATGAGATGATGCATGCTTATCTTAGACTCAATGGTTACAGGAATCTTAACATGGTTCTTGAAGAAGGATTATGCCAAGTGTTAGGCTACATGTGGTTGGAGTGTCAGACATACGTTTTTGATACTGCCACAATAGCTTCTTCTTCTTCTTCTTCCCGCACTCCTCTATCTACAACCACATCAAAGAAAGTTGACCCATCTGATTTTGAGAAGAGGCTGGTAAATTTCTGCAAGCATCAGATAGAAACAGATGAGTCACCATTCTTCGGTGACGGGTTCAGGAAAGTTAACAAAATGATGGCCTCAAATAATCACAGCCTTAAGGATACCCTGAAAGAGATCATCAGCATTTCCAAGACTCCACAATATTCAAAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000131 GO:0000278 GO:0000281 GO:0000746 GO:0000747 GO:0000755 GO:0000910 GO:0000917 GO:0003006 GO:0003674 GO:0003824 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005886 GO:0005933 GO:0005934 GO:0005935 GO:0005937 GO:0006109 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007049 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0008233 GO:0008285 GO:0008360 GO:0009266 GO:0009272 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010087 GO:0010088 GO:0010154 GO:0010556 GO:0010646 GO:0010648 GO:0010675 GO:0010962 GO:0010981 GO:0016020 GO:0016043 GO:0016787 GO:0019222 GO:0019538 GO:0019904 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022622 GO:0023051 GO:0023057 GO:0030016 GO:0030017 GO:0030029 GO:0030036 GO:0030234 GO:0030427 GO:0030695 GO:0031323 GO:0031326 GO:0031430 GO:0031672 GO:0032182 GO:0032501 GO:0032502 GO:0032505 GO:0032506 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032952 GO:0032953 GO:0032995 GO:0035023 GO:0035024 GO:0035670 GO:0040008 GO:0042127 GO:0042546 GO:0042995 GO:0043085 GO:0043087 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043255 GO:0043292 GO:0043332 GO:0043547 GO:0044085 GO:0044087 GO:0044093 GO:0044238 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045926 GO:0046578 GO:0046580 GO:0046620 GO:0046621 GO:0048316 GO:0048317 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051056 GO:0051058 GO:0051093 GO:0051094 GO:0051128 GO:0051179 GO:0051239 GO:0051240 GO:0051241 GO:0051286 GO:0051301 GO:0051336 GO:0051345 GO:0051641 GO:0051666 GO:0051704 GO:0055120 GO:0060237 GO:0060255 GO:0060589 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071704 GO:0071840 GO:0071852 GO:0071944 GO:0080090 GO:0090036 GO:0090038 GO:0090334 GO:0090529 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0098772 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0120025 GO:0120038 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1902410 GO:1902531 GO:1902532 GO:1903047 GO:1903338 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM RhoGAP

Protein Analysis

1613

Amino Acids

185.14

Weight (kDa)

5.97

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 179 - 340 1.8e-15 NB-ARC domain
WHD_ROQ1 PF23282 409 - 475 4.8e-14 Disease resistance protein Roq1-like, winged-helix domain
LIM PF00412 1240 - 1292 1.6e-08 LIM domain
DA1-like PF12315 1387 - 1602 1.2e-88 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 905, 3113
AarI CACCTGC 1 cut(s) 1418
Acc36I ACCTGC 3 cut(s) 1418, 1451, 2678
AccB7I CCANNNNNTGG 3 cut(s) 319, 378, 1455
AccII CGCG 3 cut(s) 518, 843, 4100
AccIII TCCGGA 1 cut(s) 893
AciI CCGC 7 cut(s) 114, 156, 2406, 2906, 3929, 4038, 4618
AclWI GGATC 6 cut(s) 254, 1393, 2661, 2916, 3483, 4266
AcoI YGGCCR 3 cut(s) 111, 310, 1111
AcuI CTGAAG 4 cut(s) 2495, 2506, 2649, 4317
AcvI CACGTG 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 339
AdeI CACNNNGTG 2 cut(s) 319, 3010
AfaI GTAC 7 cut(s) 84, 435, 1948, 2818, 3250, 3925, 3944
AflII CTTAAG 3 cut(s) 421, 3844, 4781
AflIII ACRYGT 2 cut(s) 636, 4551
AhlI ACTAGT 2 cut(s) 451, 3095
AjiI CACGTC 1 cut(s) 1325
AjnI CCWGG 4 cut(s) 291, 592, 1569, 2828
AjuI GAANNNNNNNTTGG 4 cut(s) 1229, 1261, 3268, 3300
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
Alw21I GWGCWC 4 cut(s) 987, 1164, 1219, 3882
Alw26I GTCTC 5 cut(s) 772, 1139, 1433, 4324, 4380
Alw44I GTGCAC 2 cut(s) 983, 1215
AlwI GGATC 6 cut(s) 254, 1393, 2661, 2916, 3483, 4266
AlwNI CAGNNNCTG 1 cut(s) 4267
Ama87I CYCGRG 3 cut(s) 354, 1823, 2371
Aor13HI TCCGGA 1 cut(s) 893
ApaLI GTGCAC 2 cut(s) 983, 1215
ApeKI GCWGC 8 cut(s) 14, 854, 997, 1294, 1297, 2500, 3080, 3313
AseI ATTAAT 2 cut(s) 2484, 3428
Asp700I GAANNNNTTC 4 cut(s) 687, 3514, 3571, 4185
AspA2I CCTAGG 2 cut(s) 2507, 4433
AspLEI GCGC 3 cut(s) 843, 3345, 4100
AspS9I GGNCC 5 cut(s) 369, 1693, 1840, 2134, 4459
AsuC2I CCSGG 2 cut(s) 125, 1994
AsuHPI GGTGA 6 cut(s) 1078, 3061, 3101, 4004, 4710, 4742
AvaI CYCGRG 3 cut(s) 354, 1823, 2371
AvaII GGWCC 2 cut(s) 1840, 2134
AvrII CCTAGG 2 cut(s) 2507, 4433
BaeGI GKGCMC 2 cut(s) 987, 1219
BaeI ACNNNNGTAYC 2 cut(s) 3084, 3117
BanII GRGCYC 4 cut(s) 1164, 2881, 2983, 3882
BauI CACGAG 3 cut(s) 18, 986, 1972
BbrPI CACGTG 1 cut(s) 316
BbsI GAAGAC 3 cut(s) 322, 2789, 2831
Bbv12I GWGCWC 4 cut(s) 987, 1164, 1219, 3882
BbvI GCAGC 7 cut(s) 841, 1009, 1284, 1306, 2512, 3067, 3325
BceAI ACGGC 6 cut(s) 13, 184, 325, 352, 1126, 2675
BcgI CGANNNNNNTGC 6 cut(s) 833, 867, 2672, 2706, 4388, 4422
BciT130I CCWGG 4 cut(s) 293, 594, 1571, 2830
BciVI GTATCC 3 cut(s) 3145, 3166, 4780
BcnI CCSGG 2 cut(s) 125, 1994
BcoDI GTCTC 5 cut(s) 772, 1139, 1433, 4324, 4380
BcuI ACTAGT 2 cut(s) 451, 3095
BfmI CTRYAG 6 cut(s) 46, 495, 855, 995, 2214, 3311
BfrI CTTAAG 3 cut(s) 421, 3844, 4781
BfuAI ACCTGC 3 cut(s) 1418, 1451, 2678
BfuI GTATCC 3 cut(s) 3145, 3166, 4780
BglI GCCNNNNNGGC 1 cut(s) 129
BglII AGATCT 3 cut(s) 417, 3266, 3329
BisI GCNGC 9 cut(s) 15, 114, 855, 998, 1295, 1298, 2501, 3081, 3314
BlnI CCTAGG 2 cut(s) 2507, 4433
BlsI GCNGC 9 cut(s) 16, 115, 856, 999, 1296, 1299, 2502, 3082, 3315
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 6 cut(s) 125, 293, 594, 1571, 1994, 2830
Bme18I GGWCC 2 cut(s) 1840, 2134
BmeT110I CYCGRG 3 cut(s) 354, 1823, 2371
BmgBI CACGTC 1 cut(s) 1325
BmgT120I GGNCC 5 cut(s) 369, 1693, 1840, 2134, 4459
BmiI GGNNCC 9 cut(s) 6, 324, 892, 1461, 1724, 2043, 2404, 2880, 3816
BmrFI CCNGG 6 cut(s) 125, 293, 594, 1571, 1994, 2830
BmrI ACTGGG 1 cut(s) 1741
BmuI ACTGGG 1 cut(s) 1741
BoxI GACNNNNGTC 3 cut(s) 48, 1832, 1974
BpiI GAAGAC 3 cut(s) 322, 2789, 2831
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 1718
BpuEI CTTGAG 5 cut(s) 1148, 1322, 1746, 2372, 3346
BpuMI CCSGG 2 cut(s) 125, 1994
Bsa29I ATCGAT 1 cut(s) 2187
BsaAI YACGTR 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 2 cut(s) 772, 1433
BsaJI CCNNGG 7 cut(s) 263, 292, 2071, 2121, 2507, 2717, 4433
BsaWI WCCGGW 2 cut(s) 893, 2136
BsaXI ACNNNNNCTCC 8 cut(s) 771, 801, 1263, 1293, 1974, 2004, 2875, 2905
Bse1I ACTGG 3 cut(s) 326, 1736, 3636
Bse3DI GCAATG 4 cut(s) 1251, 1530, 2706, 4033
BseAI TCCGGA 1 cut(s) 893
BseBI CCWGG 4 cut(s) 293, 594, 1571, 2830
BseCI ATCGAT 1 cut(s) 2187
BseDI CCNNGG 7 cut(s) 263, 292, 2071, 2121, 2507, 2717, 4433
BseMI GCAATG 4 cut(s) 1251, 1530, 2706, 4033
BseMII CTCAG 8 cut(s) 1114, 1383, 1807, 2022, 2049, 2550, 2751, 4218
BseNI ACTGG 3 cut(s) 326, 1736, 3636
BseRI GAGGAG 5 cut(s) 1715, 3168, 3182, 3696, 4614
BseSI GKGCMC 2 cut(s) 987, 1219
BseX3I CGGCCG 2 cut(s) 111, 1111
BseXI GCAGC 7 cut(s) 841, 1009, 1284, 1306, 2512, 3067, 3325
BsgI GTGCAG 2 cut(s) 71, 1429
Bsh1236I CGCG 3 cut(s) 518, 843, 4100
Bsh1285I CGRYCG 2 cut(s) 114, 1114
BshVI ATCGAT 1 cut(s) 2187
BsiEI CGRYCG 2 cut(s) 114, 1114
BsiHKAI GWGCWC 4 cut(s) 987, 1164, 1219, 3882
BsiHKCI CYCGRG 3 cut(s) 354, 1823, 2371
BsiSI CCGG 4 cut(s) 124, 894, 1993, 2137
BslFI GGGAC 4 cut(s) 575, 714, 809, 1840
BsmAI GTCTC 5 cut(s) 772, 1139, 1433, 4324, 4380
BsmFI GGGAC 4 cut(s) 575, 714, 809, 1840
BsmI GAATGC 7 cut(s) 1151, 1610, 2458, 3514, 3571, 3670, 4124
Bso31I GGTCTC 2 cut(s) 772, 1433
BsoBI CYCGRG 3 cut(s) 354, 1823, 2371
Bsp1286I GDGCHC 6 cut(s) 987, 1164, 1219, 2881, 2983, 3882
Bsp13I TCCGGA 1 cut(s) 893
Bsp1407I TGTACA 1 cut(s) 1946
BspACI CCGC 7 cut(s) 114, 156, 2406, 2906, 3929, 4038, 4618
BspCNI CTCAG 8 cut(s) 1113, 1382, 1806, 2021, 2048, 2551, 2750, 4219
BspDI ATCGAT 1 cut(s) 2187
BspEI TCCGGA 1 cut(s) 893
BspFNI CGCG 3 cut(s) 518, 843, 4100
BspHI TCATGA 3 cut(s) 2983, 3526, 3985
BspLI GGNNCC 9 cut(s) 6, 324, 892, 1461, 1724, 2043, 2404, 2880, 3816
BspMAI CTGCAG 4 cut(s) 499, 859, 999, 3315
BspMI ACCTGC 3 cut(s) 1418, 1451, 2678
BspPI GGATC 6 cut(s) 254, 1393, 2661, 2916, 3483, 4266
BspQI GCTCTTC 1 cut(s) 4293
BspTI CTTAAG 3 cut(s) 421, 3844, 4781
BspTNI GGTCTC 2 cut(s) 772, 1433
BsrDI GCAATG 4 cut(s) 1251, 1530, 2706, 4033
BsrGI TGTACA 1 cut(s) 1946
BsrI ACTGG 3 cut(s) 326, 1736, 3636
BssECI CCNNGG 7 cut(s) 263, 292, 2071, 2121, 2507, 2717, 4433
BssNI GRCGYC 1 cut(s) 339
BssSI CACGAG 3 cut(s) 18, 986, 1972
BssT1I CCWWGG 5 cut(s) 263, 2071, 2121, 2507, 4433
Bst2BI CACGAG 3 cut(s) 18, 986, 1972
Bst2UI CCWGG 4 cut(s) 293, 594, 1571, 2830
Bst6I CTCTTC 4 cut(s) 453, 4230, 4293, 4667
BstACI GRCGYC 1 cut(s) 339
BstAFI CTTAAG 3 cut(s) 421, 3844, 4781
BstAPI GCANNNNNTGC 2 cut(s) 1756, 3726
BstAUI TGTACA 1 cut(s) 1946
BstBAI YACGTR 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 2717
BstENI CCTNNNNNAGG 2 cut(s) 597, 2736
BstFNI CGCG 3 cut(s) 518, 843, 4100
BstHHI GCGC 3 cut(s) 843, 3345, 4100
BstMAI GTCTC 5 cut(s) 772, 1139, 1433, 4324, 4380
BstMCI CGRYCG 2 cut(s) 114, 1114
BstNI CCWGG 4 cut(s) 293, 594, 1571, 2830
BstNSI RCATGY 3 cut(s) 640, 4478, 4555
BstPAI GACNNNNGTC 3 cut(s) 48, 1832, 1974
BstSCI CCNGG 6 cut(s) 123, 291, 592, 1569, 1992, 2828
BstSFI CTRYAG 6 cut(s) 46, 495, 855, 995, 2214, 3311
BstSLI GKGCMC 2 cut(s) 987, 1219
BstUI CGCG 3 cut(s) 518, 843, 4100
BstV1I GCAGC 7 cut(s) 841, 1009, 1284, 1306, 2512, 3067, 3325
BstV2I GAAGAC 3 cut(s) 322, 2789, 2831
BstX2I RGATCY 4 cut(s) 417, 2666, 3266, 3329
BstYI RGATCY 4 cut(s) 417, 2666, 3266, 3329
BstZI CGGCCG 2 cut(s) 111, 1111
Bsu15I ATCGAT 1 cut(s) 2187
BsuI GTATCC 3 cut(s) 3145, 3166, 4780
BsuTUI ATCGAT 1 cut(s) 2187
BtgI CCRYGG 1 cut(s) 2717
BtrI CACGTC 1 cut(s) 1325
BtsI GCAGTG 1 cut(s) 4404
BtsIMutI CAGTG 6 cut(s) 642, 1386, 1729, 3015, 4268, 4404
BveI ACCTGC 3 cut(s) 1418, 1451, 2678
CaiI CAGNNNCTG 1 cut(s) 4267
CciI TCATGA 3 cut(s) 2983, 3526, 3985
CfoI GCGC 3 cut(s) 843, 3345, 4100
Cfr13I GGNCC 5 cut(s) 369, 1693, 1840, 2134, 4459
ClaI ATCGAT 1 cut(s) 2187
CseI GACGC 3 cut(s) 46, 328, 619
Csp6I GTAC 7 cut(s) 83, 434, 1947, 2817, 3249, 3924, 3943
CviQI GTAC 7 cut(s) 83, 434, 1947, 2817, 3249, 3924, 3943
DraI TTTAAA 2 cut(s) 978, 3939
DraIII CACNNNGTG 2 cut(s) 319, 3010
EaeI YGGCCR 3 cut(s) 111, 310, 1111
EagI CGGCCG 2 cut(s) 111, 1111
Eam1104I CTCTTC 4 cut(s) 453, 4230, 4293, 4667
EarI CTCTTC 4 cut(s) 453, 4230, 4293, 4667
Ecl136II GAGCTC 2 cut(s) 1162, 3880
EclXI CGGCCG 2 cut(s) 111, 1111
Eco130I CCWWGG 5 cut(s) 263, 2071, 2121, 2507, 4433
Eco147I AGGCCT 1 cut(s) 2289
Eco24I GRGCYC 4 cut(s) 1164, 2881, 2983, 3882
Eco31I GGTCTC 2 cut(s) 772, 1433
Eco32I GATATC 1 cut(s) 1478
Eco47I GGWCC 2 cut(s) 1840, 2134
Eco52I CGGCCG 2 cut(s) 111, 1111
Eco53kI GAGCTC 2 cut(s) 1162, 3880
Eco57I CTGAAG 4 cut(s) 2495, 2506, 2649, 4317
Eco72I CACGTG 1 cut(s) 316
Eco88I CYCGRG 3 cut(s) 354, 1823, 2371
EcoICRI GAGCTC 2 cut(s) 1162, 3880
EcoNI CCTNNNNNAGG 2 cut(s) 597, 2736
EcoO109I RGGNCCY 2 cut(s) 1693, 1840
EcoRI GAATTC 3 cut(s) 2444, 2999, 4148
EcoRII CCWGG 4 cut(s) 291, 592, 1569, 2828
EcoRV GATATC 1 cut(s) 1478
EcoT14I CCWWGG 5 cut(s) 263, 2071, 2121, 2507, 4433
EcoT22I ATGCAT 3 cut(s) 1612, 2943, 4476
EcoT38I GRGCYC 4 cut(s) 1164, 2881, 2983, 3882
ErhI CCWWGG 5 cut(s) 263, 2071, 2121, 2507, 4433
FaqI GGGAC 4 cut(s) 575, 714, 809, 1840
FauI CCCGC 1 cut(s) 4625
Fnu4HI GCNGC 9 cut(s) 15, 114, 855, 998, 1295, 1298, 2501, 3081, 3314
FriOI GRGCYC 4 cut(s) 1164, 2881, 2983, 3882
Fsp4HI GCNGC 9 cut(s) 15, 114, 855, 998, 1295, 1298, 2501, 3081, 3314
GlaI GCGC 3 cut(s) 842, 3344, 4099
GluI GCNGC 9 cut(s) 15, 114, 855, 998, 1295, 1298, 2501, 3081, 3314
GsuI CTGGAG 1 cut(s) 404
HapII CCGG 4 cut(s) 124, 894, 1993, 2137
HgaI GACGC 3 cut(s) 46, 328, 619
HhaI GCGC 3 cut(s) 843, 3345, 4100
Hin1I GRCGYC 1 cut(s) 339
Hin6I GCGC 3 cut(s) 841, 3343, 4098
HinP1I GCGC 3 cut(s) 841, 3343, 4098
HincII GTYRAC 6 cut(s) 61, 204, 351, 1362, 4654, 4750
HindII GTYRAC 6 cut(s) 61, 204, 351, 1362, 4654, 4750
HindIII AAGCTT 5 cut(s) 485, 684, 2144, 2246, 3239
HpaI GTTAAC 2 cut(s) 1362, 4750
HpaII CCGG 4 cut(s) 124, 894, 1993, 2137
HphI GGTGA 6 cut(s) 1078, 3061, 3101, 4004, 4710, 4742
Hpy99I CGWCG 5 cut(s) 34, 245, 344, 613, 3653
HpyCH4IV ACGT 5 cut(s) 315, 1324, 1584, 3251, 4575
HpySE526I ACGT 5 cut(s) 315, 1324, 1584, 3251, 4575
Hsp92I GRCGYC 1 cut(s) 339
HspAI GCGC 3 cut(s) 841, 3343, 4098
Kpn2I TCCGGA 1 cut(s) 893
KspAI GTTAAC 2 cut(s) 1362, 4750
LguI GCTCTTC 1 cut(s) 4293
LmnI GCTCC 6 cut(s) 1728, 2884, 2896, 3814, 3877, 3885
Lsp1109I GCAGC 7 cut(s) 841, 1009, 1284, 1306, 2512, 3067, 3325
MaeII ACGT 5 cut(s) 315, 1324, 1584, 3251, 4575
MfeI CAATTG 1 cut(s) 3738
MflI RGATCY 4 cut(s) 417, 2666, 3266, 3329
MhlI GDGCHC 6 cut(s) 987, 1164, 1219, 2881, 2983, 3882
MmeI TCCRAC 3 cut(s) 264, 487, 4539
Mph1103I ATGCAT 3 cut(s) 1612, 2943, 4476
MroI TCCGGA 1 cut(s) 893
MroXI GAANNNNTTC 4 cut(s) 687, 3514, 3571, 4185
MslI CAYNNNNRTG 6 cut(s) 137, 1451, 2787, 2946, 2972, 3990
MspA1I CMGCKG 3 cut(s) 14, 1297, 3080
MspCI CTTAAG 3 cut(s) 421, 3844, 4781
MspI CCGG 4 cut(s) 124, 894, 1993, 2137
MspR9I CCNGG 6 cut(s) 125, 293, 594, 1571, 1994, 2830
MunI CAATTG 1 cut(s) 3738
Mva1269I GAATGC 7 cut(s) 1151, 1610, 2458, 3514, 3571, 3670, 4124
MvaI CCWGG 4 cut(s) 293, 594, 1571, 2830
MvnI CGCG 3 cut(s) 518, 843, 4100
NciI CCSGG 2 cut(s) 125, 1994
NlaIV GGNNCC 9 cut(s) 6, 324, 892, 1461, 1724, 2043, 2404, 2880, 3816
NmeAIII GCCGAG 2 cut(s) 89, 1139
NmuCI GTSAC 7 cut(s) 50, 1895, 3049, 4309, 4402, 4716, 4730
NsiI ATGCAT 3 cut(s) 1612, 2943, 4476
NspI RCATGY 3 cut(s) 640, 4478, 4555
PaeI GCATGC 1 cut(s) 4478
PagI TCATGA 3 cut(s) 2983, 3526, 3985
PaqCI CACCTGC 1 cut(s) 1418
PceI AGGCCT 1 cut(s) 2289
PciI ACATGT 2 cut(s) 636, 4551
PciSI GCTCTTC 1 cut(s) 4293
PcsI WCGNNNNNNNCGW 1 cut(s) 2562
PctI GAATGC 7 cut(s) 1151, 1610, 2458, 3514, 3571, 3670, 4124
PdmI GAANNNNTTC 4 cut(s) 687, 3514, 3571, 4185
PflFI GACNNNGTC 1 cut(s) 2300
PflMI CCANNNNNTGG 3 cut(s) 319, 378, 1455
PfoI TCCNGGA 1 cut(s) 1569
PkrI GCNGC 9 cut(s) 16, 115, 856, 999, 1296, 1299, 2502, 3082, 3315
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
Ppu21I YACGTR 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 1840
PscI ACATGT 2 cut(s) 636, 4551
PshAI GACNNNNGTC 3 cut(s) 48, 1832, 1974
PshBI ATTAAT 2 cut(s) 2484, 3428
PsiI TTATAA 2 cut(s) 905, 3113
Psp124BI GAGCTC 2 cut(s) 1164, 3882
Psp5II RGGWCCY 1 cut(s) 1840
Psp6I CCWGG 4 cut(s) 291, 592, 1569, 2828
PspCI CACGTG 1 cut(s) 316
PspGI CCWGG 4 cut(s) 291, 592, 1569, 2828
PspN4I GGNNCC 9 cut(s) 6, 324, 892, 1461, 1724, 2043, 2404, 2880, 3816
PspPI GGNCC 5 cut(s) 369, 1693, 1840, 2134, 4459
PspPPI RGGWCCY 1 cut(s) 1840
PstI CTGCAG 4 cut(s) 499, 859, 999, 3315
PstNI CAGNNNCTG 1 cut(s) 4267
PsuI RGATCY 4 cut(s) 417, 2666, 3266, 3329
PsyI GACNNNGTC 1 cut(s) 2300
PvuII CAGCTG 3 cut(s) 14, 1297, 3080
RsaI GTAC 7 cut(s) 84, 435, 1948, 2818, 3250, 3925, 3944
RsaNI GTAC 7 cut(s) 83, 434, 1947, 2817, 3249, 3924, 3943
RseI CAYNNNNRTG 6 cut(s) 137, 1451, 2787, 2946, 2972, 3990
SacI GAGCTC 2 cut(s) 1164, 3882
SapI GCTCTTC 1 cut(s) 4293
SatI GCNGC 9 cut(s) 15, 114, 855, 998, 1295, 1298, 2501, 3081, 3314
Sau96I GGNCC 5 cut(s) 369, 1693, 1840, 2134, 4459
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 6 cut(s) 125, 293, 594, 1571, 1994, 2830
SduI GDGCHC 6 cut(s) 987, 1164, 1219, 2881, 2983, 3882
SfcI CTRYAG 6 cut(s) 46, 495, 855, 995, 2214, 3311
SinI GGWCC 2 cut(s) 1840, 2134
SmiMI CAYNNNNRTG 6 cut(s) 137, 1451, 2787, 2946, 2972, 3990
SmlI CTYRAG 8 cut(s) 421, 1163, 1301, 1761, 2351, 3325, 3844, 4781
SmoI CTYRAG 8 cut(s) 421, 1163, 1301, 1761, 2351, 3325, 3844, 4781
SpeI ACTAGT 2 cut(s) 451, 3095
SphI GCATGC 1 cut(s) 4478
SseBI AGGCCT 1 cut(s) 2289
SsiI CCGC 7 cut(s) 114, 156, 2406, 2906, 3929, 4038, 4618
SspI AATATT 4 cut(s) 2053, 2100, 2270, 4829
SstI GAGCTC 2 cut(s) 1164, 3882
StuI AGGCCT 1 cut(s) 2289
StyD4I CCNGG 6 cut(s) 123, 291, 592, 1569, 1992, 2828
StyI CCWWGG 5 cut(s) 263, 2071, 2121, 2507, 4433
TaiI ACGT 5 cut(s) 318, 1327, 1587, 3254, 4578
TaqII GACCGA 1 cut(s) 796
TatI WGTACW 3 cut(s) 82, 433, 1946
TauI GCSGC 1 cut(s) 116
TscAI CASTG 6 cut(s) 649, 1386, 1736, 3015, 4268, 4411
TseFI GTSAC 7 cut(s) 50, 1895, 3049, 4309, 4402, 4716, 4730
TseI GCWGC 8 cut(s) 14, 854, 997, 1294, 1297, 2500, 3080, 3313
Tsp45I GTSAC 7 cut(s) 50, 1895, 3049, 4309, 4402, 4716, 4730
TspGWI ACGGA 6 cut(s) 455, 907, 2706, 3872, 3945, 4133
TspRI CASTG 6 cut(s) 649, 1386, 1736, 3015, 4268, 4411
Tth111I GACNNNGTC 1 cut(s) 2300
Van91I CCANNNNNTGG 3 cut(s) 319, 378, 1455
Vha464I CTTAAG 3 cut(s) 421, 3844, 4781
VneI GTGCAC 2 cut(s) 983, 1215
VpaK11BI GGWCC 2 cut(s) 1840, 2134
VspI ATTAAT 2 cut(s) 2484, 3428
XagI CCTNNNNNAGG 2 cut(s) 597, 2736
XbaI TCTAGA 3 cut(s) 2158, 2440, 3332
XceI RCATGY 3 cut(s) 640, 4478, 4555
XcmI CCANNNNNNNNNTGG 5 cut(s) 379, 1016, 2128, 3011, 3682
XmaJI CCTAGG 2 cut(s) 2507, 4433
XmnI GAANNNNTTC 4 cut(s) 687, 3514, 3571, 4185
ZrmI AGTACT 1 cut(s) 84
Zsp2I ATGCAT 3 cut(s) 1612, 2943, 4476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.