AT5G45050

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007766
Physical Location & Seq
Reverse (-)
18176894 .. 18181973
5080 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45050.4

Sequence Viewer

Length: 4119 bp
ATGACCGAGAGTGAGCAAATCGTCTACATCAGCTGCATAGAGGAGGTACGATACTCCTTCGTCAGCCACCTCTCCAAAGCTCTCCAGCGAAAAGGTGTAAACGATGTCTTCATCGATAGCGATGATTCGCTTTCCAACGAGTCTCAATCAATGGTCGAGAGAGCTAGGGTTTCTGTTATGATTTTACCAGGAAACCGTACGGTATCTCTTGACAAGCTCGTGAAGGTTCTCGATTGCCAGAAGAACAAAGATCAAGTGGTGGTTCCGGTGTTGTACGGTGTCAGATCATCAGAGACCGAATGGCTTAGCGCGCTGGATTCGAAAGGATTCTCATCAGTACACCATTCCAGGAAAGAATGTAGTGACTCCCAGCTTGTAAAAGAGACTGTTAGAGATGTGTATGAGAAGCTCTTTTATATGGAACGAATTGGAATATATTCGAAGCTGCTGGAGATTGAGAAAATGATTAACAAGCAACCGTTGGACATCCGTTGTGTTGGAATTTGGGGTATGCCTGGCATAGGCAAGACTACACTTGCTAAAGCAGTCTTTGACCAAATGTCTGGTGAGTTTGATGCTCATTGCTTTATTGAAGACTACACCAAAGCTATTCAAGAGAAGGGTGTTTATTGTTTGCTGGAGGAACAGTTTTTGAAAGAAAATGCTGGTGCTAGTGGTACCGTTACGAAATTGAGCTTGCTTAGGGATAGATTAAACAATAAGAGGGTTCTTGTTGTTCTTGATGATGTCCGCAGTCCTCTGGTTGTGGAGTCTTTTCTTGGAGGGTTTGACTGGTTTGGTCCCAAAAGTCTAATCATCATAACCTCCAAAGATAAATCGGTGTTTCGCCTTTGTCGAGTCAATCAAATATACGAGGTTCAGGGTTTAAATGAGAAAGAGGCTCTTCAACTCTTCTCTTTGTGTGCGTCTATAGACGATATGGCAGAGCAGAATCTCCACGAGGTGTCAATGAAAGTTATTAAATATGCTAATGGCCATCCATTAGCTCTCAATCTCTATGGCAGAGAACTGATGGGGAAGAAAAGACCACCAGAAATGGAGATAGCATTCCTCAAACTCAAGGAATGTCCTCCAGCTATTTTTGTTGATGCAATCAAGAGCTCGTATGACACACTCAATGACAGGGAAAAAAACATTTTTTTGGACATAGCTTGTTTCTTCCAGGGAGAAAATGTTGACTACGTGATGCAACTGCTTGAGGGTTGTGGTTTCTTTCCACATGTTGGAATTGATGTTCTTGTGGAGAAGAGTCTGGTGACTATTTCAGAAAACCGAGTGCGGATGCATAACTTGATCCAAGATGTTGGCCGACAAATAATAAATAGAGAAACAAGACAGACTAAGAGGCGCAGCAGACTGTGGGAACCTTGCAGCATCAAATATTTATTAGAAGATAAGGAACAAAACGAAAATGAAGAACAAAAAACAACTTTTGAACGTGCTCAGGTCCCTGAAGAGATCGAAGGCATGTTTCTGGACACATCAAACTTAAGTTTTGATATTAAGCATGTTGCCTTTGATAATATGTTGAACCTTAGATTGTTCAAGATTTACAGTTCCAATCCTGAAGTCCATCATGTAAACAATTTCCTCAAAGGCTCTCTCAGTTCTCTTCCTAATGTGCTAAGACTCCTGCATTGGGAGAACTATCCTCTGCAGTTTCTGCCTCAAAATTTTGATCCTATACACCTTGTTGAAATCAACATGCCGTACAGCCAACTTAAGAAACTTTGGGGTGGAACCAAGGACCTGGAGATGTTGAAGACAATCAGGCTTTGTCATTCCCAACAACTAGTTGATATTGACGATCTTTTAAAAGCTCAAAATCTTGAGGTAGTTGATCTCCAAGGCTGTACAAGACTGCAGAGTTTCCCAGCCACCGGTCAATTGCTACATTTACGAGTTGTAAATCTCTCAGGTTGCACAGAGATCAAAAGTTTCCCAGAAATTCCCCCAAATATTGAGACACTGAATCTACAGGGGACTGGTATAATAGAATTACCACTTTCCATTGTTAAGCCAAACTACAGAGAGCTTTTGAATCTTCTAGCTGAAATCCCGGGTCTTTCAGGTGTCTCAAACCTTGAGCAAAGTGATCTCAAACCTTTAACAAGCCTGATGAAAATTAGCACATCTTACCAAAATCCTGGCAAGCTTAGTTGCTTGGAGCTGAATGATTGTTCTCGTTTGCGAAGTCTGCCAAACATGGTTAATTTAGAACTTCTCAAAGCCCTTGATCTTTCTGGTTGCTCAGAGCTCGAGACTATCCAGGGTTTCCCACGGAACCTGAAAGAGTTATATCTTGTTGGCACTGCAGTAAGACAAGTGCCACAACTTCCTCAAAGTCTAGAATTCTTTAATGCCCATGGTTGTGTCTCTCTCAAATCAATTCGTTTGGACTTCAAGAAGCTTCCTGTGCATTACACATTTAGTAATTGTTTCGATCTATCTCCACAAGTGGTCAACGATTTTTTAGTGCAGGCGATGGCTAATGTGATTGCAAAACACATACCAAGAGAGCGTCATGTCACAGGCTTTTCTCAAAAGACTGTGCAGCGTTCGAGTCGTGACAGTCAGCAGGAACTCAACAAAACTTTGGCTTTCAGCTTCTGTGCGCCCTCACATGCGAATCAAAATTCCAAACTTGATCTGCAACCAGGATCTTCTTCAATGACACGACTAGATCCTTCTTGGAGGAACACACTTGTGGGCTTTGCTATGCTGGTGCAAGTCGCATTTTCCGAGGGTTACTGTGATGATACTGATTTTGGCATTAGTTGTGTTTGCAAATGGAAAAACAAGGAAGGCCACTCTCATAGGAGAGAAATAAATTTGCATTGTTGGGCTTTAGGGAAAGCTGTTGAAAGGGATCATACGTTTGTCTTCTTTGATGTCAACATGCGTCCAGATACCGATGAAGGAAATGACCCCGATATCTGGGCTGATTTAGTTGTTTTTGAGTTCTTTCCTGTCAATAAACAGAGAAAGCCTCTAAATGATAGTTGCACAGTGACAAGATGTGGAGTCCGTTTAATAACTGCTGTAAACTGCAATACAAGTATCGAGAATATATCACCAGTTTTGTCCTTGGATCCGATGGAGGTTTCTGGTAATGAAGATGAAGAAGTATTGAGAGTCAGATATGCTGGTTTACAGGAGATATATAAAGCTTTGTTTCTTTACATAGCGGGTTTGTTCAATGACGAGGATGTTGGTTTGGTAGCACCACTTATTGCTAACATTATTGACATGGACGTTAGTTATGGGCTCAAGGTCTTAGCCTATAGGTCTCTCATACGTGTATCTTCCAATGGGGAAATAGTGATGCACTATTTGCTACGACAAATGGGTAAAGAAATCCTCCATACAGAATCAAAGAAGACTGACAAATTAGTCGACAATATTCAGAGTTCCATGATCGCAACAAAGGAAATCGAGATCACTCGTTCAAAGAGTCGCCGAAAGAACAACAAGGAAAAGAGAGTGGTTTGCGTAGTGGATCGAGGCAGCCGGTCCAGTGACCTATGGGTTTGGCGAAAGTATGGTCAAAAACCCATCAAAAGTTCTCCTTATCCAAGGAGTTACTATAGATGTGCCAGCTCGAAAGGTTGTTTTGCTAGGAAACAAGTCGAACGTAGCCGCACTGATCCAAATGTTTCAGTAATTACTTACATCTCTGAGCATAACCATCCATTCCCCACTCTACGCAATACTCTTGCCGGCTCCACTCGTTCCTCTTCCTCCAAATGCTCAGATGTAACTACTTCTGCCTCATCGACAGTCTCCCAAGACAAAGAAGGACCGGATAAATCCCATTTGCCTTCCTCCCCTGCTTCTCCTCCTTATGCGGCCATGGTGGTTAAGGAGGAGGACATGGAGCAATGGGACAATATGGAGTTCGATGTTGACGTTGAAGAAGATACTTTCATACCCGAATTATTTCCAGAGGATACCTTCGCTGATATGGACAAGCTTGAGGAAAATTCTCAGACTATGTTTCTCTCTCGCAGAAGCAGCGGAGGCAACATGGAAGCCCAAGGGAAGAACTCTAGTGATGATAGGGAGGTCAATTTACCTAGTAAAATTCTGAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000166 GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000381 GO:0000398 GO:0000900 GO:0001085 GO:0001103 GO:0001889 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003712 GO:0003714 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006376 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0007088 GO:0007096 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007319 GO:0007346 GO:0007368 GO:0007389 GO:0007568 GO:0008016 GO:0008134 GO:0008150 GO:0008152 GO:0008340 GO:0008360 GO:0008380 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010259 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010638 GO:0010927 GO:0012505 GO:0014743 GO:0014881 GO:0016020 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016246 GO:0016363 GO:0016441 GO:0016458 GO:0016477 GO:0016604 GO:0016607 GO:0017148 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019827 GO:0019953 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030029 GO:0030036 GO:0030154 GO:0030239 GO:0030371 GO:0030532 GO:0030718 GO:0031016 GO:0031032 GO:0031047 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031369 GO:0031536 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032465 GO:0032501 GO:0032502 GO:0032504 GO:0032535 GO:0032774 GO:0032989 GO:0032991 GO:0033043 GO:0034248 GO:0034249 GO:0034399 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035239 GO:0035295 GO:0035770 GO:0036002 GO:0036094 GO:0036099 GO:0036464 GO:0040007 GO:0040008 GO:0040011 GO:0040014 GO:0040018 GO:0040029 GO:0042692 GO:0042802 GO:0042803 GO:0042835 GO:0043170 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044057 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045182 GO:0045214 GO:0045495 GO:0045595 GO:0045597 GO:0045787 GO:0045840 GO:0045892 GO:0045927 GO:0045931 GO:0045934 GO:0045935 GO:0046011 GO:0046483 GO:0046983 GO:0048024 GO:0048232 GO:0048468 GO:0048477 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048565 GO:0048568 GO:0048588 GO:0048589 GO:0048609 GO:0048638 GO:0048639 GO:0048646 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051146 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051674 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0055001 GO:0055002 GO:0055123 GO:0060255 GO:0060293 GO:0061008 GO:0061013 GO:0061014 GO:0061031 GO:0061061 GO:0061113 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0070491 GO:0070925 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090079 GO:0090257 GO:0090304 GO:0097159 GO:0097435 GO:0097525 GO:0097659 GO:0098727 GO:0120114 GO:0140110 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903522 GO:1990402 GO:1990904 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00030 ko04320 map00030 map04320
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

1372

Amino Acids

155.7

Weight (kDa)

5.95

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 22 - 169 2.5e-16 NB-ARC domain
WHD_ROQ1 PF23282 241 - 309 7.7e-24 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 431 - 450 1e-08 Leucine Rich Repeat
WHD_ROQ1 PF23282 924 - 992 1.2e-09 Disease resistance protein Roq1-like, winged-helix domain
WRKY PF03106 1042 - 1099 6.2e-24 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3413
Acc65I GGTACC 1 cut(s) 677
AccB1I GGYRCC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 1244
AccI GTMKAC 2 cut(s) 24, 3417
AccII CGCG 1 cut(s) 311
AciI CCGC 6 cut(s) 751, 1300, 3209, 3661, 3869, 4038
AclWI GGATC 9 cut(s) 1309, 1694, 2689, 2699, 2898, 3107, 3120, 3528, 3662
AcoI YGGCCR 3 cut(s) 994, 1327, 3870
AcsI RAATTY 8 cut(s) 501, 1693, 1968, 2372, 2656, 2851, 4003, 4104
AcuI CTGAAG 2 cut(s) 1494, 1608
AdeI CACNNNGTG 1 cut(s) 964
AfaI GTAC 7 cut(s) 48, 199, 275, 339, 679, 1733, 1876
AfiI CCNNNNNNNGG 5 cut(s) 521, 1244, 1660, 1901, 2958
AflII CTTAAG 2 cut(s) 1510, 1742
AflIII ACRYGT 2 cut(s) 1240, 3319
AgeI ACCGGT 1 cut(s) 1901
AhdI GACNNNNNGTC 1 cut(s) 559
AhlI ACTAGT 1 cut(s) 1813
AjnI CCWGG 8 cut(s) 187, 347, 514, 1182, 1770, 2167, 2289, 2677
AleI CACNNNNGTG 1 cut(s) 2726
AloI GAACNNNNNNTCC 2 cut(s) 1239, 1271
Alw21I GWGCWC 3 cut(s) 1124, 1465, 2280
Alw26I GTCTC 9 cut(s) 147, 287, 377, 1979, 2101, 2276, 2401, 3315, 3808
AlwI GGATC 9 cut(s) 1309, 1694, 2689, 2699, 2898, 3107, 3120, 3528, 3662
AlwNI CAGNNNCTG 2 cut(s) 1684, 2631
Ama87I CYCGRG 2 cut(s) 2080, 2279
AoxI GGCC 4 cut(s) 994, 1327, 2827, 3870
ApeKI GCWGC 7 cut(s) 33, 445, 1371, 1392, 2575, 3528, 4035
ApoI RAATTY 8 cut(s) 501, 1693, 1968, 2372, 2656, 2851, 4003, 4104
ArsI GACNNNNNNTTYG 2 cut(s) 3550, 3582
AsiGI ACCGGT 1 cut(s) 1901
Asp700I GAANNNNTTC 3 cut(s) 326, 436, 3960
Asp718I GGTACC 1 cut(s) 677
AspLEI GCGC 4 cut(s) 311, 313, 1371, 2638
AspS9I GGNCC 5 cut(s) 800, 1468, 1768, 3534, 3821
AsuC2I CCSGG 2 cut(s) 2081, 2082
AsuHPI GGTGA 3 cut(s) 578, 1288, 3087
AsuII TTCGAA 2 cut(s) 320, 440
AvaI CYCGRG 2 cut(s) 2080, 2279
AvaII GGWCC 5 cut(s) 800, 1468, 1768, 3534, 3821
BalI TGGCCA 1 cut(s) 996
BamHI GGATCC 1 cut(s) 3112
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 3 cut(s) 1124, 2280, 3291
BauI CACGAG 2 cut(s) 218, 959
BbsI GAAGAC 5 cut(s) 100, 600, 1790, 2896, 3407
Bbv12I GWGCWC 3 cut(s) 1124, 1465, 2280
BbvI GCAGC 7 cut(s) 20, 432, 1383, 1404, 2587, 3540, 4047
BccI CCATC 7 cut(s) 1005, 1027, 1602, 2500, 3112, 3584, 3717
BceAI ACGGC 1 cut(s) 1714
BciT130I CCWGG 8 cut(s) 189, 349, 516, 1184, 1772, 2169, 2291, 2679
BciVI GTATCC 1 cut(s) 3964
BcnI CCSGG 2 cut(s) 2081, 2082
BcoDI GTCTC 9 cut(s) 147, 287, 377, 1979, 2101, 2276, 2401, 3315, 3808
BcuI ACTAGT 1 cut(s) 1813
BfaI CTAG 9 cut(s) 165, 672, 1814, 2069, 2369, 2702, 3639, 4071, 4098
BfmI CTRYAG 8 cut(s) 930, 1676, 1883, 1997, 2047, 2334, 3304, 3607
BfrI CTTAAG 2 cut(s) 1510, 1742
BfuI GTATCC 1 cut(s) 3964
BisI GCNGC 9 cut(s) 34, 446, 1372, 1393, 2576, 3529, 3661, 3870, 4036
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 9 cut(s) 35, 447, 1373, 1394, 2577, 3530, 3662, 3871, 4037
Bme18I GGWCC 5 cut(s) 800, 1468, 1768, 3534, 3821
BmeRI GACNNNNNGTC 1 cut(s) 559
BmeT110I CYCGRG 2 cut(s) 2080, 2279
BmgT120I GGNCC 5 cut(s) 800, 1468, 1768, 3534, 3821
BmiI GGNNCC 9 cut(s) 264, 679, 802, 1386, 1470, 1762, 2306, 3114, 3745
BmsI GCATC 6 cut(s) 565, 1099, 1197, 1293, 1404, 3336
BpiI GAAGAC 5 cut(s) 100, 600, 1790, 2896, 3407
BplI GAGNNNNNCTC 2 cut(s) 2995, 3027
BpmI CTGGAG 5 cut(s) 68, 470, 659, 1077, 1793
Bpu10I CCTNAGC 2 cut(s) 701, 1464
Bpu1102I GCTNAGC 1 cut(s) 305
Bpu14I TTCGAA 2 cut(s) 320, 440
BpuEI CTTGAG 6 cut(s) 1064, 1238, 1871, 2126, 3275, 4016
BpuMI CCSGG 2 cut(s) 2081, 2082
Bsa29I ATCGAT 1 cut(s) 114
BsaAI YACGTR 2 cut(s) 1204, 3320
BsaBI GATNNNNATC 1 cut(s) 331
BsaI GGTCTC 2 cut(s) 287, 3315
BsaWI WCCGGW 3 cut(s) 265, 1901, 3823
BsaXI ACNNNNNCTCC 4 cut(s) 632, 662, 1179, 1209
Bsc4I CCNNNNNNNGG 5 cut(s) 521, 1244, 1660, 1901, 2958
Bse118I RCCGGY 3 cut(s) 1901, 3531, 3740
Bse1I ACTGG 4 cut(s) 797, 2011, 3098, 3537
Bse3DI GCAATG 2 cut(s) 580, 3908
Bse8I GATNNNNATC 1 cut(s) 331
BseBI CCWGG 8 cut(s) 189, 349, 516, 1184, 1772, 2169, 2291, 2679
BseCI ATCGAT 1 cut(s) 114
BseGI GGATG 5 cut(s) 486, 997, 1308, 3235, 3709
BseJI GATNNNNATC 1 cut(s) 331
BseLI CCNNNNNNNGG 5 cut(s) 521, 1244, 1660, 1901, 2958
BseMI GCAATG 2 cut(s) 580, 3908
BseMII CTCAG 7 cut(s) 1478, 1639, 1950, 2286, 3690, 3786, 4022
BseNI ACTGG 4 cut(s) 797, 2011, 3098, 3537
BsePI GCGCGC 1 cut(s) 309
BseRI GAGGAG 3 cut(s) 56, 3849, 3902
BseXI GCAGC 7 cut(s) 20, 432, 1383, 1404, 2587, 3540, 4047
BseYI CCCAGC 2 cut(s) 369, 1894
BsgI GTGCAG 2 cut(s) 2519, 2594
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 4 cut(s) 996, 1329, 2829, 3872
BshNI GGYRCC 1 cut(s) 677
BshTI ACCGGT 1 cut(s) 1901
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 3 cut(s) 1124, 1465, 2280
BsiHKCI CYCGRG 2 cut(s) 2080, 2279
BsiSI CCGG 6 cut(s) 266, 1902, 2081, 3532, 3741, 3824
BsiWI CGTACG 1 cut(s) 197
BslFI GGGAC 4 cut(s) 786, 1454, 2017, 3920
BslI CCNNNNNNNGG 5 cut(s) 521, 1244, 1660, 1901, 2958
BsmAI GTCTC 9 cut(s) 147, 287, 377, 1979, 2101, 2276, 2401, 3315, 3808
BsmFI GGGAC 4 cut(s) 786, 1454, 2017, 3920
BsmI GAATGC 1 cut(s) 1067
BsnI GGCC 4 cut(s) 996, 1329, 2829, 3872
Bso31I GGTCTC 2 cut(s) 287, 3315
BsoBI CYCGRG 2 cut(s) 2080, 2279
Bsp119I TTCGAA 2 cut(s) 320, 440
Bsp1286I GDGCHC 4 cut(s) 1124, 1465, 2280, 3291
Bsp1407I TGTACA 1 cut(s) 1874
Bsp1720I GCTNAGC 1 cut(s) 305
Bsp19I CCATGG 2 cut(s) 2386, 3873
BspACI CCGC 6 cut(s) 751, 1300, 3209, 3661, 3869, 4038
BspANI GGCC 4 cut(s) 996, 1329, 2829, 3872
BspCNI CTCAG 7 cut(s) 1477, 1638, 1949, 2285, 3691, 3785, 4021
BspDI ATCGAT 1 cut(s) 114
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 9 cut(s) 264, 679, 802, 1386, 1470, 1762, 2306, 3114, 3745
BspMAI CTGCAG 3 cut(s) 1680, 1887, 2338
BspPI GGATC 9 cut(s) 1309, 1694, 2689, 2699, 2898, 3107, 3120, 3528, 3662
BspQI GCTCTTC 1 cut(s) 909
BspT104I TTCGAA 2 cut(s) 320, 440
BspT107I GGYRCC 1 cut(s) 677
BspTI CTTAAG 2 cut(s) 1510, 1742
BspTNI GGTCTC 2 cut(s) 287, 3315
BsrDI GCAATG 2 cut(s) 580, 3908
BsrFI RCCGGY 3 cut(s) 1901, 3531, 3740
BsrGI TGTACA 1 cut(s) 1874
BsrI ACTGG 4 cut(s) 797, 2011, 3098, 3537
BssAI RCCGGY 3 cut(s) 1901, 3531, 3740
BssHII GCGCGC 1 cut(s) 309
BssSI CACGAG 2 cut(s) 218, 959
BssT1I CCWWGG 7 cut(s) 1764, 1867, 2386, 3108, 3596, 3873, 4057
Bst2BI CACGAG 2 cut(s) 218, 959
Bst2UI CCWGG 8 cut(s) 189, 349, 516, 1184, 1772, 2169, 2291, 2679
Bst6I CTCTTC 6 cut(s) 909, 917, 1262, 1470, 1638, 3763
BstAFI CTTAAG 2 cut(s) 1510, 1742
BstAPI GCANNNNNTGC 2 cut(s) 1684, 3355
BstAUI TGTACA 1 cut(s) 1874
BstBAI YACGTR 2 cut(s) 1204, 3320
BstBI TTCGAA 2 cut(s) 320, 440
BstC8I GCNNGC 6 cut(s) 311, 698, 2174, 2502, 3619, 3742
BstDSI CCRYGG 3 cut(s) 2300, 2386, 3873
BstENI CCTNNNNNAGG 1 cut(s) 519
BstF5I GGATG 5 cut(s) 486, 997, 1308, 3235, 3709
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 4 cut(s) 311, 313, 1371, 2638
BstMAI GTCTC 9 cut(s) 147, 287, 377, 1979, 2101, 2276, 2401, 3315, 3808
BstMWI GCNNNNNNNGC 7 cut(s) 310, 1684, 2218, 2437, 3355, 4035, 4041
BstNI CCWGG 8 cut(s) 189, 349, 516, 1184, 1772, 2169, 2291, 2679
BstNSI RCATGY 6 cut(s) 1244, 1492, 1532, 1729, 2648, 2923
BstSFI CTRYAG 8 cut(s) 930, 1676, 1883, 1997, 2047, 2334, 3304, 3607
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 7 cut(s) 20, 432, 1383, 1404, 2587, 3540, 4047
BstV2I GAAGAC 5 cut(s) 100, 600, 1790, 2896, 3407
BstX2I RGATCY 3 cut(s) 2681, 2704, 3112
BstXI CCANNNNNNTGG 4 cut(s) 563, 1325, 1771, 2168
BstYI RGATCY 3 cut(s) 2681, 2704, 3112
Bsu15I ATCGAT 1 cut(s) 114
BsuI GTATCC 1 cut(s) 3964
BsuRI GGCC 4 cut(s) 996, 1329, 2829, 3872
BsuTUI ATCGAT 1 cut(s) 114
BtgI CCRYGG 3 cut(s) 2300, 2386, 3873
BtgZI GCGATG 2 cut(s) 135, 2519
BtsCI GGATG 5 cut(s) 486, 997, 1308, 3235, 3709
BtsI GCAGTG 1 cut(s) 2331
BtsIMutI CAGTG 5 cut(s) 1988, 2331, 3036, 3544, 3663
Cac8I GCNNGC 6 cut(s) 311, 698, 2174, 2502, 3619, 3742
CaiI CAGNNNCTG 2 cut(s) 1684, 2631
CfoI GCGC 4 cut(s) 311, 313, 1371, 2638
Cfr10I RCCGGY 3 cut(s) 1901, 3531, 3740
Cfr13I GGNCC 5 cut(s) 800, 1468, 1768, 3534, 3821
Cfr9I CCCGGG 1 cut(s) 2080
ClaI ATCGAT 1 cut(s) 114
CseI GACGC 3 cut(s) 915, 2531, 2912
Csp6I GTAC 7 cut(s) 47, 198, 274, 338, 678, 1732, 1875
CspAI ACCGGT 1 cut(s) 1901
CviQI GTAC 7 cut(s) 47, 198, 274, 338, 678, 1732, 1875
DraI TTTAAA 2 cut(s) 888, 1836
DraIII CACNNNGTG 1 cut(s) 964
DrdI GACNNNNNNGTC 1 cut(s) 3413
DriI GACNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 3413
EaeI YGGCCR 3 cut(s) 994, 1327, 3870
Eam1104I CTCTTC 6 cut(s) 909, 917, 1262, 1470, 1638, 3763
Eam1105I GACNNNNNGTC 1 cut(s) 559
EarI CTCTTC 6 cut(s) 909, 917, 1262, 1470, 1638, 3763
Ecl136II GAGCTC 2 cut(s) 1122, 2278
Eco130I CCWWGG 7 cut(s) 1764, 1867, 2386, 3108, 3596, 3873, 4057
Eco24I GRGCYC 3 cut(s) 1124, 2280, 3291
Eco31I GGTCTC 2 cut(s) 287, 3315
Eco32I GATATC 1 cut(s) 2956
Eco47I GGWCC 5 cut(s) 800, 1468, 1768, 3534, 3821
Eco53kI GAGCTC 2 cut(s) 1122, 2278
Eco57I CTGAAG 2 cut(s) 1494, 1608
Eco88I CYCGRG 2 cut(s) 2080, 2279
EcoICRI GAGCTC 2 cut(s) 1122, 2278
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoO109I RGGNCCY 2 cut(s) 1468, 1768
EcoRI GAATTC 1 cut(s) 2372
EcoRII CCWGG 8 cut(s) 187, 347, 514, 1182, 1770, 2167, 2289, 2677
EcoRV GATATC 1 cut(s) 2956
EcoT14I CCWWGG 7 cut(s) 1764, 1867, 2386, 3108, 3596, 3873, 4057
EcoT22I ATGCAT 1 cut(s) 1308
EcoT38I GRGCYC 3 cut(s) 1124, 2280, 3291
ErhI CCWWGG 7 cut(s) 1764, 1867, 2386, 3108, 3596, 3873, 4057
FalI AAGNNNNNCTT 4 cut(s) 888, 920, 3574, 3606
FaqI GGGAC 4 cut(s) 786, 1454, 2017, 3920
FauI CCCGC 1 cut(s) 3202
FblI GTMKAC 2 cut(s) 24, 3417
Fnu4HI GCNGC 9 cut(s) 34, 446, 1372, 1393, 2576, 3529, 3661, 3870, 4036
FokI GGATG 5 cut(s) 473, 984, 1315, 3242, 3696
FriOI GRGCYC 3 cut(s) 1124, 2280, 3291
Fsp4HI GCNGC 9 cut(s) 34, 446, 1372, 1393, 2576, 3529, 3661, 3870, 4036
FspBI CTAG 9 cut(s) 165, 672, 1814, 2069, 2369, 2702, 3639, 4071, 4098
GlaI GCGC 4 cut(s) 310, 312, 1370, 2637
GluI GCNGC 9 cut(s) 34, 446, 1372, 1393, 2576, 3529, 3661, 3870, 4036
GsaI CCCAGC 2 cut(s) 373, 1898
GsuI CTGGAG 5 cut(s) 68, 470, 659, 1077, 1793
HaeIII GGCC 4 cut(s) 996, 1329, 2829, 3872
HapII CCGG 6 cut(s) 266, 1902, 2081, 3532, 3741, 3824
HgaI GACGC 3 cut(s) 915, 2531, 2912
HhaI GCGC 4 cut(s) 311, 313, 1371, 2638
Hin6I GCGC 4 cut(s) 309, 311, 1369, 2636
HinP1I GCGC 4 cut(s) 309, 311, 1369, 2636
HincII GTYRAC 5 cut(s) 1198, 2485, 2917, 3418, 3928
HindII GTYRAC 5 cut(s) 1198, 2485, 2917, 3418, 3928
HindIII AAGCTT 4 cut(s) 2174, 2429, 3189, 3992
HpaII CCGG 6 cut(s) 266, 1902, 2081, 3532, 3741, 3824
HphI GGTGA 3 cut(s) 578, 1288, 3087
HpyCH4IV ACGT 7 cut(s) 1203, 1459, 2897, 3276, 3319, 3655, 3930
HpyF10VI GCNNNNNNNGC 7 cut(s) 310, 1684, 2218, 2437, 3355, 4035, 4041
HpySE526I ACGT 7 cut(s) 1203, 1459, 2897, 3276, 3319, 3655, 3930
HspAI GCGC 4 cut(s) 309, 311, 1369, 2636
KpnI GGTACC 1 cut(s) 681
KroI GCCGGC 1 cut(s) 3740
KroNI GCCGGC 1 cut(s) 3742
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 3 cut(s) 2188, 3749, 3898
Lsp1109I GCAGC 7 cut(s) 20, 432, 1383, 1404, 2587, 3540, 4047
LweI GCATC 6 cut(s) 565, 1099, 1197, 1293, 1404, 3336
MaeI CTAG 9 cut(s) 165, 672, 1814, 2069, 2369, 2702, 3639, 4071, 4098
MaeII ACGT 7 cut(s) 1203, 1459, 2897, 3276, 3319, 3655, 3930
MfeI CAATTG 1 cut(s) 1907
MflI RGATCY 3 cut(s) 2681, 2704, 3112
MhlI GDGCHC 4 cut(s) 1124, 1465, 2280, 3291
MlsI TGGCCA 1 cut(s) 996
MluNI TGGCCA 1 cut(s) 996
MmeI TCCRAC 4 cut(s) 159, 462, 478, 1225
Mox20I TGGCCA 1 cut(s) 996
Mph1103I ATGCAT 1 cut(s) 1308
MroNI GCCGGC 1 cut(s) 3740
MroXI GAANNNNTTC 3 cut(s) 326, 436, 3960
MscI TGGCCA 1 cut(s) 996
MslI CAYNNNNRTG 2 cut(s) 2391, 2726
Msp20I TGGCCA 1 cut(s) 996
MspA1I CMGCKG 2 cut(s) 33, 4038
MspCI CTTAAG 2 cut(s) 1510, 1742
MspI CCGG 6 cut(s) 266, 1902, 2081, 3532, 3741, 3824
MunI CAATTG 1 cut(s) 1907
Mva1269I GAATGC 1 cut(s) 1067
MvaI CCWGG 8 cut(s) 189, 349, 516, 1184, 1772, 2169, 2291, 2679
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 7 cut(s) 310, 1684, 2218, 2437, 3355, 4035, 4041
NaeI GCCGGC 1 cut(s) 3742
NciI CCSGG 2 cut(s) 2081, 2082
NcoI CCATGG 2 cut(s) 2386, 3873
NgoMIV GCCGGC 1 cut(s) 3740
NlaIV GGNNCC 9 cut(s) 264, 679, 802, 1386, 1470, 1762, 2306, 3114, 3745
NmuCI GTSAC 6 cut(s) 362, 1276, 2548, 2588, 3031, 3539
NsiI ATGCAT 1 cut(s) 1308
NspI RCATGY 6 cut(s) 1244, 1492, 1532, 1729, 2648, 2923
NspV TTCGAA 2 cut(s) 320, 440
OliI CACNNNNGTG 1 cut(s) 2726
PaeR7I CTCGAG 1 cut(s) 2279
PauI GCGCGC 1 cut(s) 309
PciI ACATGT 1 cut(s) 1240
PciSI GCTCTTC 1 cut(s) 909
PcsI WCGNNNNNNNCGW 3 cut(s) 853, 2760, 3927
PctI GAATGC 1 cut(s) 1067
PdiI GCCGGC 1 cut(s) 3742
PdmI GAANNNNTTC 3 cut(s) 326, 436, 3960
PfeI GAWTC 8 cut(s) 125, 317, 327, 952, 1993, 2062, 2650, 3392
Pfl23II CGTACG 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 1244
PfoI TCCNGGA 1 cut(s) 347
PinAI ACCGGT 1 cut(s) 1901
PkrI GCNGC 9 cut(s) 35, 447, 1373, 1394, 2577, 3530, 3662, 3871, 4037
Ppu21I YACGTR 2 cut(s) 1204, 3320
PpuMI RGGWCCY 2 cut(s) 1468, 1768
PscI ACATGT 1 cut(s) 1240
Psp124BI GAGCTC 2 cut(s) 1124, 2280
Psp5II RGGWCCY 2 cut(s) 1468, 1768
Psp6I CCWGG 8 cut(s) 187, 347, 514, 1182, 1770, 2167, 2289, 2677
PspFI CCCAGC 2 cut(s) 369, 1894
PspGI CCWGG 8 cut(s) 187, 347, 514, 1182, 1770, 2167, 2289, 2677
PspLI CGTACG 1 cut(s) 197
PspN4I GGNNCC 9 cut(s) 264, 679, 802, 1386, 1470, 1762, 2306, 3114, 3745
PspPI GGNCC 5 cut(s) 800, 1468, 1768, 3534, 3821
PspPPI RGGWCCY 2 cut(s) 1468, 1768
PstI CTGCAG 3 cut(s) 1680, 1887, 2338
PstNI CAGNNNCTG 2 cut(s) 1684, 2631
PsuI RGATCY 3 cut(s) 2681, 2704, 3112
PteI GCGCGC 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 7 cut(s) 48, 199, 275, 339, 679, 1733, 1876
RsaNI GTAC 7 cut(s) 47, 198, 274, 338, 678, 1732, 1875
RseI CAYNNNNRTG 2 cut(s) 2391, 2726
SacI GAGCTC 2 cut(s) 1124, 2280
SalI GTCGAC 1 cut(s) 3416
SapI GCTCTTC 1 cut(s) 909
SatI GCNGC 9 cut(s) 34, 446, 1372, 1393, 2576, 3529, 3661, 3870, 4036
Sau96I GGNCC 5 cut(s) 800, 1468, 1768, 3534, 3821
SduI GDGCHC 4 cut(s) 1124, 1465, 2280, 3291
SfaNI GCATC 6 cut(s) 565, 1099, 1197, 1293, 1404, 3336
SfcI CTRYAG 8 cut(s) 930, 1676, 1883, 1997, 2047, 2334, 3304, 3607
Sfr274I CTCGAG 1 cut(s) 2279
SfuI TTCGAA 2 cut(s) 320, 440
SinI GGWCC 5 cut(s) 800, 1468, 1768, 3534, 3821
SlaI CTCGAG 1 cut(s) 2279
SmaI CCCGGG 1 cut(s) 2082
SmiMI CAYNNNNRTG 2 cut(s) 2391, 2726
SmlI CTYRAG 9 cut(s) 1079, 1217, 1510, 1742, 1850, 2105, 2279, 3290, 3995
SmoI CTYRAG 9 cut(s) 1079, 1217, 1510, 1742, 1850, 2105, 2279, 3290, 3995
SpeI ACTAGT 1 cut(s) 1813
SsiI CCGC 6 cut(s) 751, 1300, 3209, 3661, 3869, 4038
SspI AATATT 3 cut(s) 1403, 1981, 3424
SspMI CTAG 9 cut(s) 165, 672, 1814, 2069, 2369, 2702, 3639, 4071, 4098
SstI GAGCTC 2 cut(s) 1124, 2280
StyI CCWWGG 7 cut(s) 1764, 1867, 2386, 3108, 3596, 3873, 4057
TaiI ACGT 7 cut(s) 1206, 1462, 2900, 3279, 3322, 3658, 3933
TaqII GACCGA 2 cut(s) 20, 311
TatI WGTACW 2 cut(s) 337, 1874
TauI GCSGC 2 cut(s) 3663, 3872
TfiI GAWTC 8 cut(s) 125, 317, 327, 952, 1993, 2062, 2650, 3392
TscAI CASTG 5 cut(s) 1995, 2338, 3036, 3544, 3670
TseFI GTSAC 6 cut(s) 362, 1276, 2548, 2588, 3031, 3539
TseI GCWGC 7 cut(s) 33, 445, 1371, 1392, 2575, 3528, 4035
Tsp45I GTSAC 6 cut(s) 362, 1276, 2548, 2588, 3031, 3539
TspDTI ATGAA 8 cut(s) 100, 986, 1449, 2156, 2952, 3150, 3156, 3937
TspGWI ACGGA 3 cut(s) 479, 2317, 3038
TspMI CCCGGG 1 cut(s) 2080
TspRI CASTG 5 cut(s) 1995, 2338, 3036, 3544, 3670
Van91I CCANNNNNTGG 1 cut(s) 1244
Vha464I CTTAAG 2 cut(s) 1510, 1742
VpaK11BI GGWCC 5 cut(s) 800, 1468, 1768, 3534, 3821
XagI CCTNNNNNAGG 1 cut(s) 519
XapI RAATTY 8 cut(s) 501, 1693, 1968, 2372, 2656, 2851, 4003, 4104
XbaI TCTAGA 1 cut(s) 2368
XceI RCATGY 6 cut(s) 1244, 1492, 1532, 1729, 2648, 2923
XhoI CTCGAG 1 cut(s) 2279
XmaI CCCGGG 1 cut(s) 2080
XmiI GTMKAC 2 cut(s) 24, 3417
XmnI GAANNNNTTC 3 cut(s) 326, 436, 3960
XspI CTAG 9 cut(s) 165, 672, 1814, 2069, 2369, 2702, 3639, 4071, 4098
Zsp2I ATGCAT 1 cut(s) 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.